RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 M0QZ92 97 aa12.11□□□□□ -0.47
PTPRF-204ENST00000412568 SLC9A1P19634 815 aa12.11□□□□□ -0.47
PTPRF-204ENST00000412568 PSMC6P62333 389 aa12.11□□□□□ -0.47
PTPRF-204ENST00000412568 KRT71Q3SY84 523 aa12.11□□□□□ -0.47
PTPRF-204ENST00000412568 TTC19Q6DKK2 380 aaPredicted RBP12.11□□□□□ -0.47
PTPRF-204ENST00000412568 GLYCTKQ8IVS8 523 aa12.11□□□□□ -0.47
PTPRF-204ENST00000412568 AGBL3Q8NEM8 1001 aa12.11□□□□□ -0.47
PTPRF-204ENST00000412568 GLIS2Q9BZE0 524 aaPredicted RBP12.11□□□□□ -0.47
PTPRF-204ENST00000412568 SLC5A4Q9NY91 659 aa12.11□□□□□ -0.47
PTPRF-204ENST00000412568 PARP2Q9UGN5 583 aa12.11□□□□□ -0.47
PTPRF-204ENST00000412568 PALMO75781 387 aa12.11□□□□□ -0.47
PTPRF-204ENST00000412568 JAK3P52333 1124 aa12.11□□□□□ -0.47
PTPRF-204ENST00000412568 SLC8A3P57103 927 aa12.11□□□□□ -0.47
PTPRF-204ENST00000412568 DRAP1Q14919 205 aaPredicted RBP12.11□□□□□ -0.47
PTPRF-204ENST00000412568 PPP1R21Q6ZMI0 780 aa12.11□□□□□ -0.47
PTPRF-204ENST00000412568 PPP4R3CPQ6ZMV5 832 aa12.11□□□□□ -0.47
PTPRF-204ENST00000412568 ZNF384Q8TF68 577 aa12.11□□□□□ -0.47
PTPRF-204ENST00000412568 SLC16A10Q8TF71 515 aa12.11□□□□□ -0.47
PTPRF-204ENST00000412568 GPRC5CQ9NQ84 441 aa12.11□□□□□ -0.47
PTPRF-204ENST00000412568 FAN1Q9Y2M0 1017 aa12.11□□□□□ -0.47
PTPRF-204ENST00000412568 BZW2Q9Y6E2 419 aaKnown RBP12.11□□□□□ -0.47
PTPRF-204ENST00000412568 ESYT2A0FGR8 921 aa12.11□□□□□ -0.47
PTPRF-204ENST00000412568 CLDN3O15551 220 aa12.11□□□□□ -0.47
PTPRF-204ENST00000412568 LMNB1P20700 586 aa12.11□□□□□ -0.47
PTPRF-204ENST00000412568 PMS1P54277 932 aaKnown RBP12.11□□□□□ -0.47
PTPRF-204ENST00000412568 CDR2LQ86X02 465 aaPredicted RBP12.11□□□□□ -0.47
PTPRF-204ENST00000412568 MAGOHBQ96A72 148 aaKnown RBP12.11□□□□□ -0.47
PTPRF-204ENST00000412568 LRRC45Q96CN5 670 aa12.11□□□□□ -0.47
PTPRF-204ENST00000412568 ZNF302Q9NR11 478 aa12.11□□□□□ -0.47
PTPRF-204ENST00000412568 EMSYQ7Z589 1322 aa12.1□□□□□ -0.47
PTPRF-204ENST00000412568 TADA3O75528 432 aa12.1□□□□□ -0.47
PTPRF-204ENST00000412568 HEXIM1O94992 359 aaKnown RBP12.1□□□□□ -0.47
PTPRF-204ENST00000412568 PPFIA1Q13136 1202 aa12.1□□□□□ -0.47
PTPRF-204ENST00000412568 DGKZQ13574 1117 aa12.1□□□□□ -0.47
PTPRF-204ENST00000412568 PROM2Q8N271 834 aa12.1□□□□□ -0.47
PTPRF-204ENST00000412568 LPAR1Q92633 364 aa12.1□□□□□ -0.47
PTPRF-204ENST00000412568 FAM163AQ96GL9 167 aaPredicted RBP12.1□□□□□ -0.47
PTPRF-204ENST00000412568 FERMT1Q9BQL6 677 aa12.1□□□□□ -0.47
PTPRF-204ENST00000412568 SPC25Q9HBM1 224 aa12.1□□□□□ -0.47
PTPRF-204ENST00000412568 DAPK3O43293 454 aa12.1□□□□□ -0.47
PTPRF-204ENST00000412568 ACOT2P49753 483 aa12.1□□□□□ -0.47
PTPRF-204ENST00000412568 NFRKBQ6P4R8 1299 aa12.1□□□□□ -0.47
PTPRF-204ENST00000412568 GSPT2Q8IYD1 628 aaKnown RBP12.1□□□□□ -0.47
PTPRF-204ENST00000412568 ZNF710Q8N1W2 664 aa12.1□□□□□ -0.47
PTPRF-204ENST00000412568 ATP6V0A4Q9HBG4 840 aa12.1□□□□□ -0.47
PTPRF-204ENST00000412568 JPH1Q9HDC5 661 aaPredicted RBP12.1□□□□□ -0.47
PTPRF-204ENST00000412568 SLC9A2Q9UBY0 812 aa12.1□□□□□ -0.47
PTPRF-204ENST00000412568 XRN1Q8IZH2 1706 aaKnown RBP12.1□□□□□ -0.47
PTPRF-204ENST00000412568 ZBTB39O15060 712 aa12.1□□□□□ -0.47
PTPRF-204ENST00000412568 RPA1P27694 616 aa12.1□□□□□ -0.47
PTPRF-204ENST00000412568 KCNJ6P48051 423 aa12.1□□□□□ -0.47
PTPRF-204ENST00000412568 CEP85LQ5SZL2 805 aa12.1□□□□□ -0.47
PTPRF-204ENST00000412568 CC2D1AQ6P1N0 951 aaPredicted RBP12.1□□□□□ -0.47
PTPRF-204ENST00000412568 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.1□□□□□ -0.47
PTPRF-204ENST00000412568 CEP63Q96MT8 703 aa12.1□□□□□ -0.47
PTPRF-204ENST00000412568 POLR3FQ9H1D9 316 aaPredicted RBP12.1□□□□□ -0.47
PTPRF-204ENST00000412568 GGPS1O95749 300 aa12.09□□□□□ -0.47
PTPRF-204ENST00000412568 CYP11B2P19099 503 aa12.09□□□□□ -0.47
PTPRF-204ENST00000412568 MAPK4P31152 587 aa12.09□□□□□ -0.47
PTPRF-204ENST00000412568 VAMP7P51809 220 aa12.09□□□□□ -0.47
PTPRF-204ENST00000412568 ORC2Q13416 577 aaPredicted RBP12.09□□□□□ -0.47
PTPRF-204ENST00000412568 CASP8Q14790 479 aa12.09□□□□□ -0.47
PTPRF-204ENST00000412568 INTS8Q75QN2 995 aaKnown RBP12.09□□□□□ -0.47
PTPRF-204ENST00000412568 APBB1IPQ7Z5R6 666 aaPredicted RBP12.09□□□□□ -0.47
PTPRF-204ENST00000412568 PPP1R14CQ8TAE6 165 aa12.09□□□□□ -0.47
PTPRF-204ENST00000412568 RUSC1Q9BVN2 902 aa12.09□□□□□ -0.47
PTPRF-204ENST00000412568 IQCGQ9H095 443 aaKnown RBP12.09□□□□□ -0.47
PTPRF-204ENST00000412568 MRFAP1Q9Y605 127 aa12.09□□□□□ -0.47
PTPRF-204ENST00000412568 PDE4DIPQ5VU43 2346 aa12.09□□□□□ -0.47
PTPRF-204ENST00000412568 ATP8B1O43520 1251 aa12.09□□□□□ -0.47
PTPRF-204ENST00000412568 CSPG5O95196 566 aa12.09□□□□□ -0.47
PTPRF-204ENST00000412568 PLEKP08567 350 aaPredicted RBP12.09□□□□□ -0.47
PTPRF-204ENST00000412568 TFDP1Q14186 410 aa12.09□□□□□ -0.47
PTPRF-204ENST00000412568 TRIP13Q15645 432 aaPredicted RBP12.09□□□□□ -0.47
PTPRF-204ENST00000412568 MCPH1Q8NEM0 835 aa12.09□□□□□ -0.47
PTPRF-204ENST00000412568 SPATA33Q96N06 139 aa12.09□□□□□ -0.47
PTPRF-204ENST00000412568 CEP72Q9P209 647 aa12.09□□□□□ -0.47
PTPRF-204ENST00000412568 CHORDC1Q9UHD1 332 aaPredicted RBP12.09□□□□□ -0.47
PTPRF-204ENST00000412568 KIF4AO95239 1232 aa12.09□□□□□ -0.47
PTPRF-204ENST00000412568 CTNNA1P35221 906 aaKnown RBP12.09□□□□□ -0.47
PTPRF-204ENST00000412568 FXR2P51116 673 aaKnown RBP eCLIP12.09□□□□□ -0.47
PTPRF-204ENST00000412568 DYNLT1P63172 113 aa12.09□□□□□ -0.47
PTPRF-204ENST00000412568 ZNF211Q13398 564 aaPredicted RBP12.09□□□□□ -0.47
PTPRF-204ENST00000412568 CRY2Q49AN0 593 aa12.09□□□□□ -0.47
PTPRF-204ENST00000412568 CCDC63Q8NA47 563 aa12.09□□□□□ -0.47
PTPRF-204ENST00000412568 FBF1Q8TES7 1133 aa12.09□□□□□ -0.47
PTPRF-204ENST00000412568 FAM149B1Q96BN6 582 aa12.09□□□□□ -0.47
PTPRF-204ENST00000412568 MXRA8Q9BRK3 442 aa12.09□□□□□ -0.47
PTPRF-204ENST00000412568 GOLPH3Q9H4A6 298 aa12.09□□□□□ -0.47
PTPRF-204ENST00000412568 DNAJC17Q9NVM6 304 aaKnown RBP12.09□□□□□ -0.47
PTPRF-204ENST00000412568 CAPN11Q9UMQ6 739 aa12.09□□□□□ -0.47
PTPRF-204ENST00000412568 TMX2Q9Y320 296 aa12.09□□□□□ -0.47
PTPRF-204ENST00000412568 ESYT3A0FGR9 886 aa12.08□□□□□ -0.47
PTPRF-204ENST00000412568 TMEM150BA6NC51 233 aa12.08□□□□□ -0.47
PTPRF-204ENST00000412568 GJB7Q6PEY0 223 aa12.08□□□□□ -0.47
PTPRF-204ENST00000412568 REXO1L1PQ8IX06 675 aa12.08□□□□□ -0.47
PTPRF-204ENST00000412568 FAM204AQ9H8W3 233 aa12.08□□□□□ -0.47
PTPRF-204ENST00000412568 FBXO40Q9UH90 709 aa12.08□□□□□ -0.47
PTPRF-204ENST00000412568 A0A1W2PQC6 194 aa12.08□□□□□ -0.48
PTPRF-204ENST00000412568 ZNF185O15231 689 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms