RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 MTERF2Q49AM1 385 aa21.44■■□□□ 1.02
SF3A1-202ENST00000411423 PLA2G4FQ68DD2 849 aa21.44■■□□□ 1.02
SF3A1-202ENST00000411423 ANO5Q75V66 913 aa21.44■■□□□ 1.02
SF3A1-202ENST00000411423 FAM228AQ86W67 206 aa21.44■■□□□ 1.02
SF3A1-202ENST00000411423 MICALL1Q8N3F8 863 aa21.44■■□□□ 1.02
SF3A1-202ENST00000411423 ZNF579Q8NAF0 562 aaKnown RBP21.44■■□□□ 1.02
SF3A1-202ENST00000411423 ZSCAN31Q96LW9 406 aaPredicted RBP21.44■■□□□ 1.02
SF3A1-202ENST00000411423 YME1L1Q96TA2 773 aa21.44■■□□□ 1.02
SF3A1-202ENST00000411423 LLPHQ9BRT6 129 aaKnown RBP21.44■■□□□ 1.02
SF3A1-202ENST00000411423 BRMS1Q9HCU9 246 aa21.44■■□□□ 1.02
SF3A1-202ENST00000411423 TTC3P53804 2025 aa21.44■■□□□ 1.02
SF3A1-202ENST00000411423 MAGEB2O15479 319 aa21.43■■□□□ 1.02
SF3A1-202ENST00000411423 CRYBB1P53674 252 aaPredicted RBP21.43■■□□□ 1.02
SF3A1-202ENST00000411423 XKR3Q5GH77 459 aa21.43■■□□□ 1.02
SF3A1-202ENST00000411423 ZNF689Q96CS4 500 aaPredicted RBP21.43■■□□□ 1.02
SF3A1-202ENST00000411423 TSPYL2Q9H2G4 693 aaPredicted RBP21.43■■□□□ 1.02
SF3A1-202ENST00000411423 SH2B1Q9NRF2 756 aaPredicted RBP21.43■■□□□ 1.02
SF3A1-202ENST00000411423 NLRP11P59045 1033 aaKnown RBP21.42■■□□□ 1.02
SF3A1-202ENST00000411423 PSMC5P62195 406 aa21.42■■□□□ 1.02
SF3A1-202ENST00000411423 NFX1Q12986 1120 aaKnown RBP21.42■■□□□ 1.02
SF3A1-202ENST00000411423 TRIM29Q14134 588 aa21.42■■□□□ 1.02
SF3A1-202ENST00000411423 RABEP1Q15276 862 aa21.42■■□□□ 1.02
SF3A1-202ENST00000411423 NCAPH2Q6IBW4 605 aa21.42■■□□□ 1.02
SF3A1-202ENST00000411423 C8orf76Q96K31 380 aa21.42■■□□□ 1.02
SF3A1-202ENST00000411423 NAP1L4Q99733 375 aaKnown RBP21.42■■□□□ 1.02
SF3A1-202ENST00000411423 TMEM60Q9H2L4 133 aa21.42■■□□□ 1.02
SF3A1-202ENST00000411423 RGL1Q9NZL6 768 aa21.42■■□□□ 1.02
SF3A1-202ENST00000411423 ST3GAL5Q9UNP4 418 aa21.42■■□□□ 1.02
SF3A1-202ENST00000411423 AKT3Q9Y243 479 aa21.42■■□□□ 1.02
SF3A1-202ENST00000411423 IGKV6-21A0A0C4DH24 114 aa21.41■■□□□ 1.02
SF3A1-202ENST00000411423 DDX11L8A8MPP1 907 aa21.41■■□□□ 1.02
SF3A1-202ENST00000411423 ZBTB39O15060 712 aa21.41■■□□□ 1.02
SF3A1-202ENST00000411423 RPS6KA5O75582 802 aa21.41■■□□□ 1.02
SF3A1-202ENST00000411423 GATMP50440 423 aa21.41■■□□□ 1.02
SF3A1-202ENST00000411423 NPEPPSP55786 919 aa21.41■■□□□ 1.02
SF3A1-202ENST00000411423 EPHA7Q15375 998 aa21.41■■□□□ 1.02
SF3A1-202ENST00000411423 DYDC2Q96IM9 177 aa21.41■■□□□ 1.02
SF3A1-202ENST00000411423 MTMR9Q96QG7 549 aa21.41■■□□□ 1.02
SF3A1-202ENST00000411423 PRRC2BQ5JSZ5 2229 aaKnown RBP21.41■■□□□ 1.02
SF3A1-202ENST00000411423 DGKIO75912 1065 aa21.4■■□□□ 1.02
SF3A1-202ENST00000411423 QARSP47897 775 aaKnown RBP21.4■■□□□ 1.02
SF3A1-202ENST00000411423 GPC3P51654 580 aa21.4■■□□□ 1.02
SF3A1-202ENST00000411423 TBC1D8BQ0IIM8 1120 aa21.4■■□□□ 1.02
SF3A1-202ENST00000411423 EPC2Q52LR7 807 aa21.4■■□□□ 1.02
SF3A1-202ENST00000411423 FBXO18Q8NFZ0 1043 aa21.4■■□□□ 1.02
SF3A1-202ENST00000411423 FTHL17Q9BXU8 183 aa21.4■■□□□ 1.02
SF3A1-202ENST00000411423 NLRC5Q86WI3 1866 aa21.4■■□□□ 1.02
SF3A1-202ENST00000411423 ADGRA3Q8IWK6 1321 aa21.39■■□□□ 1.01
SF3A1-202ENST00000411423 P4HBP07237 508 aaKnown RBP21.39■■□□□ 1.01
SF3A1-202ENST00000411423 ATP2B1P20020 1258 aa21.39■■□□□ 1.01
SF3A1-202ENST00000411423 FGFR4P22455 802 aa21.39■■□□□ 1.01
SF3A1-202ENST00000411423 CYP4A11Q02928 519 aa21.39■■□□□ 1.01
SF3A1-202ENST00000411423 CTTNQ14247 550 aaKnown RBP21.39■■□□□ 1.01
SF3A1-202ENST00000411423 DSC3Q14574 896 aa21.39■■□□□ 1.01
SF3A1-202ENST00000411423 CALCRLQ16602 461 aa21.39■■□□□ 1.01
SF3A1-202ENST00000411423 FBXO22Q8NEZ5 403 aa21.39■■□□□ 1.01
SF3A1-202ENST00000411423 TBC1D32Q96NH3 1257 aa21.39■■□□□ 1.01
SF3A1-202ENST00000411423 LXNQ9BS40 222 aa21.39■■□□□ 1.01
SF3A1-202ENST00000411423 MARCH6O60337 910 aa21.38■■□□□ 1.01
SF3A1-202ENST00000411423 NEMFO60524 1076 aa21.38■■□□□ 1.01
SF3A1-202ENST00000411423 MAFO75444 373 aaPredicted RBP21.38■■□□□ 1.01
SF3A1-202ENST00000411423 CSDE1O75534 798 aaKnown RBP21.38■■□□□ 1.01
SF3A1-202ENST00000411423 IBSPP21815 317 aaPredicted RBP21.38■■□□□ 1.01
SF3A1-202ENST00000411423 HMGN5P82970 282 aaKnown RBP21.38■■□□□ 1.01
SF3A1-202ENST00000411423 NPAS4Q8IUM7 802 aa21.38■■□□□ 1.01
SF3A1-202ENST00000411423 TMEM192Q8IY95 271 aa21.38■■□□□ 1.01
SF3A1-202ENST00000411423 SLFN12Q8IYM2 578 aa21.38■■□□□ 1.01
SF3A1-202ENST00000411423 MAP7D2Q96T17 732 aa21.38■■□□□ 1.01
SF3A1-202ENST00000411423 ADAM2Q99965 735 aa21.38■■□□□ 1.01
SF3A1-202ENST00000411423 COL25A1Q9BXS0 654 aaPredicted RBP21.38■■□□□ 1.01
SF3A1-202ENST00000411423 CYP26B1Q9NR63 512 aa21.38■■□□□ 1.01
SF3A1-202ENST00000411423 RGS18Q9NS28 235 aa21.38■■□□□ 1.01
SF3A1-202ENST00000411423 C9IYK1 514 aa21.37■■□□□ 1.01
SF3A1-202ENST00000411423 DLL1O00548 723 aa21.37■■□□□ 1.01
SF3A1-202ENST00000411423 GTPBP6O43824 516 aaPredicted RBP21.37■■□□□ 1.01
SF3A1-202ENST00000411423 SLITRK3O94933 977 aa21.37■■□□□ 1.01
SF3A1-202ENST00000411423 BAG4O95429 457 aaKnown RBP21.37■■□□□ 1.01
SF3A1-202ENST00000411423 TMOD1P28289 359 aa21.37■■□□□ 1.01
SF3A1-202ENST00000411423 MCM7P33993 719 aa21.37■■□□□ 1.01
SF3A1-202ENST00000411423 TXKP42681 527 aa21.37■■□□□ 1.01
SF3A1-202ENST00000411423 SARSP49591 514 aaKnown RBP21.37■■□□□ 1.01
SF3A1-202ENST00000411423 KSR1Q8IVT5 923 aa21.37■■□□□ 1.01
SF3A1-202ENST00000411423 C4orf19Q8IY42 314 aa21.37■■□□□ 1.01
SF3A1-202ENST00000411423 FIBCD1Q8N539 461 aa21.37■■□□□ 1.01
SF3A1-202ENST00000411423 TMX3Q96JJ7 454 aa21.37■■□□□ 1.01
SF3A1-202ENST00000411423 EIF2AK1Q9BQI3 630 aaKnown RBP21.37■■□□□ 1.01
SF3A1-202ENST00000411423 TTC12Q9H892 705 aaPredicted RBP21.37■■□□□ 1.01
SF3A1-202ENST00000411423 RALGAPA2Q2PPJ7 1873 aa21.37■■□□□ 1.01
SF3A1-202ENST00000411423 KIAA1671Q9BY89 1806 aa21.36■■□□□ 1.01
SF3A1-202ENST00000411423 GPR182O15218 404 aa21.36■■□□□ 1.01
SF3A1-202ENST00000411423 DARSP14868 501 aaKnown RBP21.36■■□□□ 1.01
SF3A1-202ENST00000411423 EIF4BP23588 611 aaKnown RBP21.36■■□□□ 1.01
SF3A1-202ENST00000411423 NBR1Q14596 966 aa21.36■■□□□ 1.01
SF3A1-202ENST00000411423 FAM184AQ8NB25 1140 aa21.36■■□□□ 1.01
SF3A1-202ENST00000411423 HSD17B14Q9BPX1 270 aa21.36■■□□□ 1.01
SF3A1-202ENST00000411423 FOXP1Q9H334 677 aaPredicted RBP21.36■■□□□ 1.01
SF3A1-202ENST00000411423 BMP2KQ9NSY1 1161 aaPredicted RBP21.36■■□□□ 1.01
SF3A1-202ENST00000411423 PCDHA12Q9UN75 941 aa21.36■■□□□ 1.01
SF3A1-202ENST00000411423 MRPL42Q9Y6G3 142 aaKnown RBP21.36■■□□□ 1.01
SF3A1-202ENST00000411423 ARID2Q68CP9 1835 aa21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms