RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 TBCAO75347 108 aaKnown RBP10.87□□□□□ -0.67
COL17A1-203ENST00000393211 NUDT17P0C025 328 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 POTEIP0CG38 1075 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 GHRP10912 638 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 MUTP22033 750 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 HPDP32754 393 aaPredicted RBP10.87□□□□□ -0.67
COL17A1-203ENST00000393211 SOX5P35711 763 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 PSMC2P35998 433 aaKnown RBP10.87□□□□□ -0.67
COL17A1-203ENST00000393211 SREBF1P36956 1147 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 CASP5P51878 434 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 SEC24CP53992 1094 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 KCNQ4P56696 695 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 GSCP56915 257 aaPredicted RBP10.87□□□□□ -0.67
COL17A1-203ENST00000393211 PPATQ06203 517 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 ENOX2Q16206 610 aaKnown RBP10.87□□□□□ -0.67
COL17A1-203ENST00000393211 QRICH1Q2TAL8 776 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 ODF2Q5BJF6 829 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 RNF187Q5TA31 235 aaPredicted RBP10.87□□□□□ -0.67
COL17A1-203ENST00000393211 PRR5LQ6MZQ0 368 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 POTEGQ6S5H5 508 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 POTEEQ6S8J3 1075 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 TBC1D16Q8TBP0 767 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 UBLCP1Q8WVY7 318 aaPredicted RBP10.87□□□□□ -0.67
COL17A1-203ENST00000393211 TLCD1Q96CP7 247 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 CRAMP1Q96RY5 1269 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 PSMD1Q99460 953 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 AP1M1Q9BXS5 423 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 DDX47Q9H0S4 455 aaKnown RBP10.87□□□□□ -0.67
COL17A1-203ENST00000393211 ZHX3Q9H4I2 956 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 KANSL2Q9H9L4 492 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 GCNT4Q9P109 453 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 SEL1LQ9UBV2 794 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 USP17L15C9J2P7 530 aa10.86□□□□□ -0.67
COL17A1-203ENST00000393211 USP17L13C9JLJ4 530 aa10.86□□□□□ -0.67
COL17A1-203ENST00000393211 USP17L11C9JVI0 530 aa10.86□□□□□ -0.67
COL17A1-203ENST00000393211 USP17L18D6R9N7 530 aa10.86□□□□□ -0.67
COL17A1-203ENST00000393211 USP17L22D6RA61 530 aa10.86□□□□□ -0.67
COL17A1-203ENST00000393211 USP17L17D6RBQ6 530 aa10.86□□□□□ -0.67
COL17A1-203ENST00000393211 USP17L19D6RCP7 530 aa10.86□□□□□ -0.67
COL17A1-203ENST00000393211 USP17L20D6RJB6 530 aa10.86□□□□□ -0.67
COL17A1-203ENST00000393211 MEIS2O14770 477 aa10.86□□□□□ -0.67
COL17A1-203ENST00000393211 CHUKO15111 745 aa10.86□□□□□ -0.67
COL17A1-203ENST00000393211 DAPK3O43293 454 aa10.86□□□□□ -0.67
COL17A1-203ENST00000393211 RASSF9O75901 435 aa10.86□□□□□ -0.67
COL17A1-203ENST00000393211 CYP3A4P08684 503 aa10.86□□□□□ -0.67
COL17A1-203ENST00000393211 GALCP54803 685 aa10.86□□□□□ -0.67
COL17A1-203ENST00000393211 EIF6P56537 245 aaKnown RBP10.86□□□□□ -0.67
COL17A1-203ENST00000393211 IRX3P78415 501 aaPredicted RBP10.86□□□□□ -0.67
COL17A1-203ENST00000393211 CACNB1Q02641 598 aaPredicted RBP10.86□□□□□ -0.67
COL17A1-203ENST00000393211 DHX9Q08211 1270 aaKnown RBP10.86□□□□□ -0.67
COL17A1-203ENST00000393211 USP17L24Q0WX57 530 aa10.86□□□□□ -0.67
COL17A1-203ENST00000393211 IFT88Q13099 833 aa10.86□□□□□ -0.67
COL17A1-203ENST00000393211 BYSLQ13895 437 aaKnown RBP10.86□□□□□ -0.67
COL17A1-203ENST00000393211 PPP2R5AQ15172 486 aa10.86□□□□□ -0.67
COL17A1-203ENST00000393211 DCAF17Q5H9S7 520 aaPredicted RBP10.86□□□□□ -0.67
COL17A1-203ENST00000393211 USP17L6PQ6QN14 398 aa10.86□□□□□ -0.67
COL17A1-203ENST00000393211 HHIPL2Q6UWX4 724 aa10.86□□□□□ -0.67
COL17A1-203ENST00000393211 STXBP4Q6ZWJ1 553 aa10.86□□□□□ -0.67
COL17A1-203ENST00000393211 CACNA2D3Q8IZS8 1091 aa10.86□□□□□ -0.67
COL17A1-203ENST00000393211 MAGEC3Q8TD91 643 aa10.86□□□□□ -0.67
COL17A1-203ENST00000393211 U2AF1L4Q8WU68 220 aaKnown RBP10.86□□□□□ -0.67
COL17A1-203ENST00000393211 TATDN2Q93075 761 aa10.86□□□□□ -0.67
COL17A1-203ENST00000393211 PGM2Q96G03 612 aa10.86□□□□□ -0.67
COL17A1-203ENST00000393211 GPR101Q96P66 508 aaPredicted RBP10.86□□□□□ -0.67
COL17A1-203ENST00000393211 MYCBPQ99417 103 aaPredicted RBP10.86□□□□□ -0.67
COL17A1-203ENST00000393211 SYT11Q9BT88 431 aa10.86□□□□□ -0.67
COL17A1-203ENST00000393211 FAM129AQ9BZQ8 928 aa10.86□□□□□ -0.67
COL17A1-203ENST00000393211 NEUROG2Q9H2A3 272 aa10.86□□□□□ -0.67
COL17A1-203ENST00000393211 TUFT1Q9NNX1 390 aa10.86□□□□□ -0.67
COL17A1-203ENST00000393211 PPANQ9NQ55 473 aaKnown RBP10.86□□□□□ -0.67
COL17A1-203ENST00000393211 DDX20Q9UHI6 824 aaKnown RBP10.86□□□□□ -0.67
COL17A1-203ENST00000393211 AMACRQ9UHK6 382 aa10.86□□□□□ -0.67
COL17A1-203ENST00000393211 RASAL2Q9UJF2 1139 aa10.86□□□□□ -0.67
COL17A1-203ENST00000393211 MIF4GDA9UHW6 222 aaKnown RBP10.85□□□□□ -0.67
COL17A1-203ENST00000393211 DDX3YO15523 660 aaKnown RBP10.85□□□□□ -0.67
COL17A1-203ENST00000393211 TTI1O43156 1089 aa10.85□□□□□ -0.67
COL17A1-203ENST00000393211 GGPS1O95749 300 aa10.85□□□□□ -0.67
COL17A1-203ENST00000393211 SLC16A2P36021 539 aa10.85□□□□□ -0.67
COL17A1-203ENST00000393211 IFFO1Q0D2I5 559 aa10.85□□□□□ -0.67
COL17A1-203ENST00000393211 TRAF1Q13077 416 aa10.85□□□□□ -0.67
COL17A1-203ENST00000393211 PABPC4Q13310 644 aaKnown RBP eCLIP10.85□□□□□ -0.67
COL17A1-203ENST00000393211 PICALMQ13492 652 aa10.85□□□□□ -0.67
COL17A1-203ENST00000393211 MYBPC2Q14324 1141 aa10.85□□□□□ -0.67
COL17A1-203ENST00000393211 PLS1Q14651 629 aa10.85□□□□□ -0.67
COL17A1-203ENST00000393211 VPS72Q15906 364 aa10.85□□□□□ -0.67
COL17A1-203ENST00000393211 GKAP1Q5VSY0 366 aaPredicted RBP10.85□□□□□ -0.67
COL17A1-203ENST00000393211 TCERG1LQ5VWI1 586 aa10.85□□□□□ -0.67
COL17A1-203ENST00000393211 DUPD1Q68J44 220 aa10.85□□□□□ -0.67
COL17A1-203ENST00000393211 KCTD1Q719H9 257 aa10.85□□□□□ -0.67
COL17A1-203ENST00000393211 SMIM5Q71RC9 77 aa10.85□□□□□ -0.67
COL17A1-203ENST00000393211 DDX42Q86XP3 938 aaKnown RBP eCLIP10.85□□□□□ -0.67
COL17A1-203ENST00000393211 RHOT2Q8IXI1 618 aa10.85□□□□□ -0.67
COL17A1-203ENST00000393211 CCDC13Q8IYE1 715 aa10.85□□□□□ -0.67
COL17A1-203ENST00000393211 MORC4Q8TE76 937 aa10.85□□□□□ -0.67
COL17A1-203ENST00000393211 CTNNBL1Q8WYA6 563 aaPredicted RBP10.85□□□□□ -0.67
COL17A1-203ENST00000393211 GJA10Q969M2 543 aa10.85□□□□□ -0.67
COL17A1-203ENST00000393211 LENG9Q96B70 501 aa10.85□□□□□ -0.67
COL17A1-203ENST00000393211 SEC16BQ96JE7 1060 aa10.85□□□□□ -0.67
COL17A1-203ENST00000393211 RUNDC3BQ96NL0 473 aa10.85□□□□□ -0.67
COL17A1-203ENST00000393211 FMO2Q99518 471 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms