RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 PSMC4P43686 418 aa13.72□□□□□ -0.21
CIITA-202ENST00000381835 VEGFBP49765 207 aa13.72□□□□□ -0.21
CIITA-202ENST00000381835 HSDL1Q3SXM5 330 aa13.72□□□□□ -0.21
CIITA-202ENST00000381835 HERC4Q5GLZ8 1057 aaPredicted RBP13.72□□□□□ -0.21
CIITA-202ENST00000381835 CELF3Q5SZQ8 465 aaKnown RBP13.72□□□□□ -0.21
CIITA-202ENST00000381835 REM2Q8IYK8 340 aaPredicted RBP13.72□□□□□ -0.21
CIITA-202ENST00000381835 KATNBL1Q9H079 304 aa13.72□□□□□ -0.21
CIITA-202ENST00000381835 FLRT1Q9NZU1 646 aa13.72□□□□□ -0.21
CIITA-202ENST00000381835 TBC1D7Q9P0N9 293 aa13.72□□□□□ -0.21
CIITA-202ENST00000381835 CTNND2Q9UQB3 1225 aa13.72□□□□□ -0.21
CIITA-202ENST00000381835 PPP2R2CQ9Y2T4 447 aa13.72□□□□□ -0.21
CIITA-202ENST00000381835 GSTTP1A0A1W2PQM5 241 aa13.72□□□□□ -0.21
CIITA-202ENST00000381835 RSPH10B2B2RC85 870 aa13.72□□□□□ -0.21
CIITA-202ENST00000381835 TADA3O75528 432 aa13.72□□□□□ -0.21
CIITA-202ENST00000381835 TRPA1O75762 1119 aa13.72□□□□□ -0.21
CIITA-202ENST00000381835 ZRANB2O95218 330 aaKnown RBP eCLIP13.72□□□□□ -0.21
CIITA-202ENST00000381835 ATG7O95352 703 aa13.72□□□□□ -0.21
CIITA-202ENST00000381835 RSPH10BP0C881 870 aa13.72□□□□□ -0.21
CIITA-202ENST00000381835 PLA2G4AP47712 749 aa13.72□□□□□ -0.21
CIITA-202ENST00000381835 RARRES1P49788 294 aa13.72□□□□□ -0.21
CIITA-202ENST00000381835 CCL14Q16627 93 aa13.72□□□□□ -0.21
CIITA-202ENST00000381835 PLA2G4FQ68DD2 849 aa13.72□□□□□ -0.21
CIITA-202ENST00000381835 PADI6Q6TGC4 694 aa13.72□□□□□ -0.21
CIITA-202ENST00000381835 C1orf186Q6ZWK4 172 aa13.72□□□□□ -0.21
CIITA-202ENST00000381835 BBXQ8WY36 941 aaPredicted RBP13.72□□□□□ -0.21
CIITA-202ENST00000381835 SPATA33Q96N06 139 aa13.72□□□□□ -0.21
CIITA-202ENST00000381835 ZNF302Q9NR11 478 aa13.72□□□□□ -0.21
CIITA-202ENST00000381835 GJD2Q9UKL4 321 aa13.72□□□□□ -0.21
CIITA-202ENST00000381835 FANCGO15287 622 aa13.71□□□□□ -0.21
CIITA-202ENST00000381835 DKC1O60832 514 aaKnown RBP eCLIP13.71□□□□□ -0.21
CIITA-202ENST00000381835 HOXC6P09630 235 aa13.71□□□□□ -0.21
CIITA-202ENST00000381835 CASQ1P31415 396 aa13.71□□□□□ -0.21
CIITA-202ENST00000381835 TCF7P36402 384 aaPredicted RBP13.71□□□□□ -0.21
CIITA-202ENST00000381835 RGS2P41220 211 aa13.71□□□□□ -0.21
CIITA-202ENST00000381835 NPEPPSP55786 919 aa13.71□□□□□ -0.21
CIITA-202ENST00000381835 LACTBP83111 547 aaPredicted RBP13.71□□□□□ -0.21
CIITA-202ENST00000381835 PRKCEQ02156 737 aa13.71□□□□□ -0.21
CIITA-202ENST00000381835 STIM1Q13586 685 aa13.71□□□□□ -0.21
CIITA-202ENST00000381835 ACVR2BQ13705 512 aa13.71□□□□□ -0.21
CIITA-202ENST00000381835 HSP90AA4PQ58FG1 418 aa13.71□□□□□ -0.21
CIITA-202ENST00000381835 XKR9Q5GH70 373 aa13.71□□□□□ -0.21
CIITA-202ENST00000381835 PRAMEF19Q5SWL8 479 aa13.71□□□□□ -0.21
CIITA-202ENST00000381835 ANO5Q75V66 913 aa13.71□□□□□ -0.21
CIITA-202ENST00000381835 MAEAQ7L5Y9 396 aa13.71□□□□□ -0.21
CIITA-202ENST00000381835 KIAA0895Q8NCT3 520 aa13.71□□□□□ -0.21
CIITA-202ENST00000381835 IPO4Q8TEX9 1081 aaKnown RBP13.71□□□□□ -0.21
CIITA-202ENST00000381835 SOCS4Q8WXH5 440 aa13.71□□□□□ -0.21
CIITA-202ENST00000381835 SEPT1Q8WYJ6 367 aa13.71□□□□□ -0.21
CIITA-202ENST00000381835 USP6NLQ92738 828 aa13.71□□□□□ -0.21
CIITA-202ENST00000381835 MED15Q96RN5 788 aa13.71□□□□□ -0.21
CIITA-202ENST00000381835 BAG1Q99933 345 aaPredicted RBP13.71□□□□□ -0.21
CIITA-202ENST00000381835 ABHD16BQ9H3Z7 469 aa13.71□□□□□ -0.21
CIITA-202ENST00000381835 DBR1Q9UK59 544 aaKnown RBP13.71□□□□□ -0.21
CIITA-202ENST00000381835 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.7□□□□□ -0.22
CIITA-202ENST00000381835 SFI1A8K8P3 1242 aa13.7□□□□□ -0.22
CIITA-202ENST00000381835 TBCAO75347 108 aaKnown RBP13.7□□□□□ -0.22
CIITA-202ENST00000381835 CDK11BP21127 795 aaKnown RBP13.7□□□□□ -0.22
CIITA-202ENST00000381835 ERCC5P28715 1186 aaPredicted RBP13.7□□□□□ -0.22
CIITA-202ENST00000381835 CYP2C19P33261 490 aa13.7□□□□□ -0.22
CIITA-202ENST00000381835 FCGRTP55899 365 aa13.7□□□□□ -0.22
CIITA-202ENST00000381835 EHHADHQ08426 723 aa13.7□□□□□ -0.22
CIITA-202ENST00000381835 TMEM139Q8IV31 216 aa13.7□□□□□ -0.22
CIITA-202ENST00000381835 ADSSL1Q8N142 457 aa13.7□□□□□ -0.22
CIITA-202ENST00000381835 TRIM47Q96LD4 638 aa13.7□□□□□ -0.22
CIITA-202ENST00000381835 SYNRGQ9UMZ2 1314 aa13.7□□□□□ -0.22
CIITA-202ENST00000381835 IGSF9BQ9UPX0 1349 aa13.7□□□□□ -0.22
CIITA-202ENST00000381835 GOLGA6L9A6NEM1 432 aa13.7□□□□□ -0.22
CIITA-202ENST00000381835 USO1O60763 962 aaKnown RBP13.7□□□□□ -0.22
CIITA-202ENST00000381835 GNG11P61952 73 aa13.7□□□□□ -0.22
CIITA-202ENST00000381835 PAK1Q13153 545 aa13.7□□□□□ -0.22
CIITA-202ENST00000381835 PSMD2Q13200 908 aa13.7□□□□□ -0.22
CIITA-202ENST00000381835 LRRC41Q15345 812 aa13.7□□□□□ -0.22
CIITA-202ENST00000381835 FAM26FQ5R3K3 315 aa13.7□□□□□ -0.22
CIITA-202ENST00000381835 OTUD6AQ7L8S5 288 aa13.7□□□□□ -0.22
CIITA-202ENST00000381835 MSL3Q8N5Y2 521 aaKnown RBP13.7□□□□□ -0.22
CIITA-202ENST00000381835 GLIS3Q8NEA6 775 aa13.7□□□□□ -0.22
CIITA-202ENST00000381835 NELFBQ8WX92 580 aa13.7□□□□□ -0.22
CIITA-202ENST00000381835 GPR20Q99678 358 aa13.7□□□□□ -0.22
CIITA-202ENST00000381835 APBA2Q99767 749 aa13.7□□□□□ -0.22
CIITA-202ENST00000381835 INTS13Q9NVM9 706 aa13.7□□□□□ -0.22
CIITA-202ENST00000381835 SEPT9Q9UHD8 586 aaPredicted RBP13.7□□□□□ -0.22
CIITA-202ENST00000381835 NFE2L3Q9Y4A8 694 aa13.7□□□□□ -0.22
CIITA-202ENST00000381835 RBM47A0AV96 593 aaKnown RBP13.69□□□□□ -0.22
CIITA-202ENST00000381835 FRMD3A2A2Y4 597 aa13.69□□□□□ -0.22
CIITA-202ENST00000381835 FAM13AO94988 1023 aa13.69□□□□□ -0.22
CIITA-202ENST00000381835 MAP2K2P36507 400 aa13.69□□□□□ -0.22
CIITA-202ENST00000381835 STAT5BP51692 787 aa13.69□□□□□ -0.22
CIITA-202ENST00000381835 CT47A1Q5JQC4 288 aaPredicted RBP13.69□□□□□ -0.22
CIITA-202ENST00000381835 SFR1Q86XK3 245 aa13.69□□□□□ -0.22
CIITA-202ENST00000381835 ENOX1Q8TC92 643 aaKnown RBP13.69□□□□□ -0.22
CIITA-202ENST00000381835 CEP170P1Q96L14 293 aa13.69□□□□□ -0.22
CIITA-202ENST00000381835 PCYT2Q99447 389 aa13.69□□□□□ -0.22
CIITA-202ENST00000381835 ANKEF1Q9NU02 776 aa13.69□□□□□ -0.22
CIITA-202ENST00000381835 RNF186Q9NXI6 227 aa13.69□□□□□ -0.22
CIITA-202ENST00000381835 KCND2Q9NZV8 630 aa13.69□□□□□ -0.22
CIITA-202ENST00000381835 MAFBQ9Y5Q3 323 aaPredicted RBP13.69□□□□□ -0.22
CIITA-202ENST00000381835 ARID2Q68CP9 1835 aa13.69□□□□□ -0.22
CIITA-202ENST00000381835 IGKV6D-21A0A0A0MT36 114 aa13.69□□□□□ -0.22
CIITA-202ENST00000381835 PSMA7O14818 248 aa13.69□□□□□ -0.22
CIITA-202ENST00000381835 SEC31AO94979 1220 aaKnown RBP13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms