RNA–Protein interactions for RNA: ENST00000380358.8

CHD3-203, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2 BASIC

Gene CHD3, Length 7,356 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-203ENST00000380358 ANKS3Q6ZW76 656 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 INPP5DQ92835 1189 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 ARL8AQ96BM9 186 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 SEC31BQ9NQW1 1179 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 THEGQ9P2T0 379 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 SOS2Q07890 1332 aaPredicted RBP13.29□□□□□ -0.28
CHD3-203ENST00000380358 AKT1P31749 480 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 USP14P54578 494 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 PTH1RQ03431 593 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 RBL2Q08999 1139 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 DEPDC1Q5TB30 811 aa13.29□□□□□ -0.28
CHD3-203ENST00000380358 LARP4BQ92615 738 aaKnown RBP13.29□□□□□ -0.28
CHD3-203ENST00000380358 PPIEQ9UNP9 301 aaKnown RBP13.29□□□□□ -0.28
CHD3-203ENST00000380358 BMP3P12645 472 aa13.28□□□□□ -0.28
CHD3-203ENST00000380358 LMNB2Q03252 620 aa13.28□□□□□ -0.28
CHD3-203ENST00000380358 TRIM15Q9C019 465 aa13.28□□□□□ -0.28
CHD3-203ENST00000380358 SEL1LQ9UBV2 794 aa13.28□□□□□ -0.28
CHD3-203ENST00000380358 A0A0D9SFI3 127 aa13.28□□□□□ -0.28
CHD3-203ENST00000380358 CTNND1O60716 968 aaKnown RBP13.28□□□□□ -0.28
CHD3-203ENST00000380358 NLRP11P59045 1033 aaKnown RBP13.28□□□□□ -0.28
CHD3-203ENST00000380358 SGO1Q5FBB7 561 aa13.28□□□□□ -0.28
CHD3-203ENST00000380358 ZC3H18Q86VM9 953 aaKnown RBP13.28□□□□□ -0.28
CHD3-203ENST00000380358 ARMC2Q8NEN0 867 aa13.28□□□□□ -0.28
CHD3-203ENST00000380358 OTUD5Q96G74 571 aa13.28□□□□□ -0.28
CHD3-203ENST00000380358 NOVA2Q9UNW9 492 aaKnown RBP13.28□□□□□ -0.28
CHD3-203ENST00000380358 MAN1C1Q9NR34 630 aa13.28□□□□□ -0.28
CHD3-203ENST00000380358 FBXO2Q9UK22 296 aaPredicted RBP13.28□□□□□ -0.28
CHD3-203ENST00000380358 ZHX2Q9Y6X8 837 aa13.28□□□□□ -0.28
CHD3-203ENST00000380358 MYO1GB0I1T2 1018 aa13.28□□□□□ -0.28
CHD3-203ENST00000380358 COPB1P53618 953 aaKnown RBP13.28□□□□□ -0.28
CHD3-203ENST00000380358 CUL1Q13616 776 aa13.28□□□□□ -0.28
CHD3-203ENST00000380358 CENPTQ96BT3 561 aa13.28□□□□□ -0.28
CHD3-203ENST00000380358 EPN1Q9Y6I3 576 aaPredicted RBP13.28□□□□□ -0.28
CHD3-203ENST00000380358 HSPA8P11142 646 aaKnown RBP13.28□□□□□ -0.28
CHD3-203ENST00000380358 AARSP49588 968 aaKnown RBP eCLIP13.28□□□□□ -0.281e-6■■■■■ 36.1
CHD3-203ENST00000380358 DHX9Q08211 1270 aaKnown RBP13.28□□□□□ -0.28
CHD3-203ENST00000380358 USP33Q8TEY7 942 aa13.28□□□□□ -0.28
CHD3-203ENST00000380358 DCUN1D1Q96GG9 259 aa13.28□□□□□ -0.28
CHD3-203ENST00000380358 V9GYQ6 96 aa13.28□□□□□ -0.28
CHD3-203ENST00000380358 ABCC4O15439 1325 aa13.28□□□□□ -0.28
CHD3-203ENST00000380358 RNF103-CHMP3A0A140T963 221 aa13.28□□□□□ -0.28
CHD3-203ENST00000380358 PRR23D1E9PI22 279 aaPredicted RBP13.28□□□□□ -0.28
CHD3-203ENST00000380358 SERPINB2P05120 415 aa13.28□□□□□ -0.28
CHD3-203ENST00000380358 PRR23D2P0DMB1 279 aaPredicted RBP13.28□□□□□ -0.28
CHD3-203ENST00000380358 ZNF568Q3ZCX4 644 aa13.28□□□□□ -0.28
CHD3-203ENST00000380358 LRRC8EQ6NSJ5 796 aa13.28□□□□□ -0.28
CHD3-203ENST00000380358 MFN1Q8IWA4 741 aa13.28□□□□□ -0.28
CHD3-203ENST00000380358 SPZ1Q9BXG8 430 aa13.28□□□□□ -0.28
CHD3-203ENST00000380358 PUS3Q9BZE2 481 aaKnown RBP13.28□□□□□ -0.28
CHD3-203ENST00000380358 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.28□□□□□ -0.28
CHD3-203ENST00000380358 HUS1O60921 280 aa13.27□□□□□ -0.28
CHD3-203ENST00000380358 PRAMEP78395 509 aa13.27□□□□□ -0.28
CHD3-203ENST00000380358 CRLF3Q8IUI8 442 aa13.27□□□□□ -0.28
CHD3-203ENST00000380358 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.27□□□□□ -0.28
CHD3-203ENST00000380358 TRIM45Q9H8W5 580 aaPredicted RBP13.27□□□□□ -0.28
CHD3-203ENST00000380358 DCTN4Q9UJW0 460 aa13.27□□□□□ -0.28
CHD3-203ENST00000380358 SCAF8Q9UPN6 1271 aaKnown RBP13.27□□□□□ -0.28
CHD3-203ENST00000380358 ABCC1P33527 1531 aa13.27□□□□□ -0.28
CHD3-203ENST00000380358 SOAT1P35610 550 aa13.27□□□□□ -0.28
CHD3-203ENST00000380358 RNF181Q9P0P0 153 aa13.27□□□□□ -0.28
CHD3-203ENST00000380358 ADGRA2Q96PE1 1338 aa13.27□□□□□ -0.28
CHD3-203ENST00000380358 TADA3O75528 432 aa13.27□□□□□ -0.29
CHD3-203ENST00000380358 CA4P22748 312 aa13.27□□□□□ -0.29
CHD3-203ENST00000380358 MAP3K7CLP57077 242 aa13.27□□□□□ -0.29
CHD3-203ENST00000380358 PRR23CQ6ZRP0 262 aa13.27□□□□□ -0.29
CHD3-203ENST00000380358 ALG13Q9NP73 1137 aaKnown RBP13.27□□□□□ -0.29
CHD3-203ENST00000380358 AURKCQ9UQB9 309 aa13.27□□□□□ -0.29
CHD3-203ENST00000380358 SNX5Q9Y5X3 404 aa13.27□□□□□ -0.29
CHD3-203ENST00000380358 KRT72Q14CN4 511 aa13.27□□□□□ -0.29
CHD3-203ENST00000380358 FASTKD1Q53R41 847 aaKnown RBP13.27□□□□□ -0.29
CHD3-203ENST00000380358 ATP11CQ8NB49 1132 aa13.27□□□□□ -0.29
CHD3-203ENST00000380358 SNX21Q969T3 373 aa13.27□□□□□ -0.29
CHD3-203ENST00000380358 VPS39Q96JC1 886 aa13.27□□□□□ -0.29
CHD3-203ENST00000380358 FAM161BQ96MY7 647 aa13.27□□□□□ -0.29
CHD3-203ENST00000380358 AGAP3Q96P47 875 aa13.27□□□□□ -0.29
CHD3-203ENST00000380358 RIMS2Q9UQ26 1411 aa13.27□□□□□ -0.29
CHD3-203ENST00000380358 ABCB11O95342 1321 aa13.27□□□□□ -0.29
CHD3-203ENST00000380358 ARHGEF9O43307 516 aa13.27□□□□□ -0.29
CHD3-203ENST00000380358 SASH1O94885 1247 aa13.27□□□□□ -0.29
CHD3-203ENST00000380358 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.27□□□□□ -0.295e-7■■■■■ 33.9
CHD3-203ENST00000380358 N6AMT1Q9Y5N5 214 aa13.27□□□□□ -0.29
CHD3-203ENST00000380358 ZMYM6O95789 1325 aa13.27□□□□□ -0.29
CHD3-203ENST00000380358 PRKAB2O43741 272 aa13.27□□□□□ -0.29
CHD3-203ENST00000380358 FGAP02671 866 aa13.27□□□□□ -0.29
CHD3-203ENST00000380358 TTC8Q8TAM2 541 aa13.27□□□□□ -0.29
CHD3-203ENST00000380358 SERPINI1Q99574 410 aa13.27□□□□□ -0.29
CHD3-203ENST00000380358 NDE1Q9NXR1 346 aa13.27□□□□□ -0.29
CHD3-203ENST00000380358 KIAA1468Q9P260 1216 aa13.27□□□□□ -0.29
CHD3-203ENST00000380358 DDX5P17844 614 aaKnown RBP13.26□□□□□ -0.29
CHD3-203ENST00000380358 CRKLP46109 303 aaKnown RBP13.26□□□□□ -0.29
CHD3-203ENST00000380358 ASPSCR1Q9BZE9 553 aa13.26□□□□□ -0.29
CHD3-203ENST00000380358 ANKRD65E5RJM6 399 aa13.26□□□□□ -0.29
CHD3-203ENST00000380358 RASGRF2O14827 1237 aa13.26□□□□□ -0.29
CHD3-203ENST00000380358 MAP4P27816 1152 aaKnown RBP13.26□□□□□ -0.29
CHD3-203ENST00000380358 KCNJ6P48051 423 aa13.26□□□□□ -0.29
CHD3-203ENST00000380358 C8orf34Q49A92 452 aa13.26□□□□□ -0.29
CHD3-203ENST00000380358 TRIM42Q8IWZ5 723 aa13.26□□□□□ -0.29
CHD3-203ENST00000380358 ADNPQ9H2P0 1102 aa13.26□□□□□ -0.29
CHD3-203ENST00000380358 EFTUD2Q15029 972 aaKnown RBP eCLIP13.26□□□□□ -0.29
CHD3-203ENST00000380358 AP1ARQ63HQ0 302 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms