RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 ERCC3P19447 782 aa23.63■■□□□ 1.37
TRIM54-202ENST00000380075 HOXD13P35453 343 aa23.63■■□□□ 1.37
TRIM54-202ENST00000380075 MAGEA1P43355 309 aa23.63■■□□□ 1.37
TRIM54-202ENST00000380075 POLR2FP61218 127 aaKnown RBP23.63■■□□□ 1.37
TRIM54-202ENST00000380075 B3GNT9Q6UX72 402 aa23.63■■□□□ 1.37
TRIM54-202ENST00000380075 PRPF38AQ8NAV1 312 aaKnown RBP23.63■■□□□ 1.37
TRIM54-202ENST00000380075 MXRA8Q9BRK3 442 aa23.63■■□□□ 1.37
TRIM54-202ENST00000380075 KIAA1683Q9H0B3 1180 aa23.63■■□□□ 1.37
TRIM54-202ENST00000380075 MAP3K20Q9NYL2 800 aaKnown RBP23.63■■□□□ 1.37
TRIM54-202ENST00000380075 AIPL1Q9NZN9 384 aa23.63■■□□□ 1.37
TRIM54-202ENST00000380075 CCPG1Q9ULG6 757 aa23.63■■□□□ 1.37
TRIM54-202ENST00000380075 ODF2LQ9ULJ1 636 aa23.63■■□□□ 1.37
TRIM54-202ENST00000380075 RPTORQ8N122 1335 aa23.63■■□□□ 1.37
TRIM54-202ENST00000380075 CCL15-CCL14A0A0B4J2E2 113 aa23.63■■□□□ 1.37
TRIM54-202ENST00000380075 ENC1O14682 589 aa23.63■■□□□ 1.37
TRIM54-202ENST00000380075 EPB41P11171 864 aaKnown RBP23.63■■□□□ 1.37
TRIM54-202ENST00000380075 PRLRP16471 622 aa23.63■■□□□ 1.37
TRIM54-202ENST00000380075 MOGSQ13724 837 aa23.63■■□□□ 1.37
TRIM54-202ENST00000380075 CCL15Q16663 113 aa23.63■■□□□ 1.37
TRIM54-202ENST00000380075 TDRD12Q587J7 1177 aaKnown RBP23.63■■□□□ 1.37
TRIM54-202ENST00000380075 IQCEQ6IPM2 695 aa23.63■■□□□ 1.37
TRIM54-202ENST00000380075 BRI3BPQ8WY22 251 aa23.63■■□□□ 1.37
TRIM54-202ENST00000380075 PARVGQ9HBI0 331 aa23.63■■□□□ 1.37
TRIM54-202ENST00000380075 FBXO28Q9NVF7 368 aa23.63■■□□□ 1.37
TRIM54-202ENST00000380075 ASTN1O14525 1302 aa23.62■■□□□ 1.37
TRIM54-202ENST00000380075 MACROD2A1Z1Q3 448 aa23.62■■□□□ 1.37
TRIM54-202ENST00000380075 MANSC4A6NHS7 340 aaPredicted RBP23.62■■□□□ 1.37
TRIM54-202ENST00000380075 RSPH10B2B2RC85 870 aa23.62■■□□□ 1.37
TRIM54-202ENST00000380075 TBC1D8O95759 1140 aa23.62■■□□□ 1.37
TRIM54-202ENST00000380075 NR3C1P04150 777 aa23.62■■□□□ 1.37
TRIM54-202ENST00000380075 RSPH10BP0C881 870 aa23.62■■□□□ 1.37
TRIM54-202ENST00000380075 XRCC5P13010 732 aaKnown RBP23.62■■□□□ 1.37
TRIM54-202ENST00000380075 FAM193AP78312 1265 aa23.62■■□□□ 1.37
TRIM54-202ENST00000380075 RNF10Q8N5U6 811 aaKnown RBP23.62■■□□□ 1.37
TRIM54-202ENST00000380075 GANQ9H2C0 597 aa23.62■■□□□ 1.37
TRIM54-202ENST00000380075 NLRC4Q9NPP4 1024 aa23.62■■□□□ 1.37
TRIM54-202ENST00000380075 C19orf81C9J6K1 198 aa23.61■■□□□ 1.37
TRIM54-202ENST00000380075 SEC31AO94979 1220 aaKnown RBP23.61■■□□□ 1.37
TRIM54-202ENST00000380075 CETPP11597 493 aa23.61■■□□□ 1.37
TRIM54-202ENST00000380075 ZNF131P52739 623 aa23.61■■□□□ 1.37
TRIM54-202ENST00000380075 SH3D19Q5HYK7 790 aa23.61■■□□□ 1.37
TRIM54-202ENST00000380075 PTPN18Q99952 460 aa23.61■■□□□ 1.37
TRIM54-202ENST00000380075 DUSP10Q9Y6W6 482 aa23.61■■□□□ 1.37
TRIM54-202ENST00000380075 IPO5O00410 1097 aaKnown RBP23.61■■□□□ 1.37
TRIM54-202ENST00000380075 CHMP2AO43633 222 aa23.61■■□□□ 1.37
TRIM54-202ENST00000380075 MCM3P25205 808 aa23.61■■□□□ 1.37
TRIM54-202ENST00000380075 UTP14CQ5TAP6 766 aaKnown RBP23.61■■□□□ 1.37
TRIM54-202ENST00000380075 GADL1Q6ZQY3 521 aa23.61■■□□□ 1.37
TRIM54-202ENST00000380075 PIGOQ8TEQ8 1089 aa23.61■■□□□ 1.37
TRIM54-202ENST00000380075 UNC45AQ9H3U1 944 aa23.61■■□□□ 1.37
TRIM54-202ENST00000380075 FBXL5Q9UKA1 691 aa23.61■■□□□ 1.37
TRIM54-202ENST00000380075 ZNF536O15090 1300 aa23.61■■□□□ 1.37
TRIM54-202ENST00000380075 RBBP6Q7Z6E9 1792 aaKnown RBP23.6■■□□□ 1.37
TRIM54-202ENST00000380075 MAP2K2P36507 400 aa23.6■■□□□ 1.37
TRIM54-202ENST00000380075 LONRF2Q1L5Z9 754 aa23.6■■□□□ 1.37
TRIM54-202ENST00000380075 WDR93Q6P2C0 686 aa23.6■■□□□ 1.37
TRIM54-202ENST00000380075 MYCT1Q8N699 235 aa23.6■■□□□ 1.37
TRIM54-202ENST00000380075 MKNK1Q9BUB5 465 aa23.6■■□□□ 1.37
TRIM54-202ENST00000380075 HDAC6Q9UBN7 1215 aa23.6■■□□□ 1.37
TRIM54-202ENST00000380075 TESPA1A2RU30 521 aaPredicted RBP23.6■■□□□ 1.37
TRIM54-202ENST00000380075 GTPBP10A4D1E9 387 aaKnown RBP23.6■■□□□ 1.37
TRIM54-202ENST00000380075 TLR2O60603 784 aa23.6■■□□□ 1.37
TRIM54-202ENST00000380075 ARP10275 920 aa23.6■■□□□ 1.37
TRIM54-202ENST00000380075 GUCY2CP25092 1073 aa23.6■■□□□ 1.37
TRIM54-202ENST00000380075 PLA2G4AP47712 749 aa23.6■■□□□ 1.37
TRIM54-202ENST00000380075 USP14P54578 494 aa23.6■■□□□ 1.37
TRIM54-202ENST00000380075 MSL3Q8N5Y2 521 aaKnown RBP23.6■■□□□ 1.37
TRIM54-202ENST00000380075 CRACR2AQ9BSW2 395 aa23.6■■□□□ 1.37
TRIM54-202ENST00000380075 TMOD4Q9NZQ9 345 aa23.6■■□□□ 1.37
TRIM54-202ENST00000380075 SNX12Q9UMY4 172 aa23.6■■□□□ 1.37
TRIM54-202ENST00000380075 BZW2Q9Y6E2 419 aaKnown RBP23.6■■□□□ 1.37
TRIM54-202ENST00000380075 SMCHD1A6NHR9 2005 aa23.59■■□□□ 1.37
TRIM54-202ENST00000380075 UBXN2AP68543 259 aa23.59■■□□□ 1.37
TRIM54-202ENST00000380075 ASIC2Q16515 512 aa23.59■■□□□ 1.37
TRIM54-202ENST00000380075 EXOC3L4Q17RC7 722 aa23.59■■□□□ 1.37
TRIM54-202ENST00000380075 TREML2Q5T2D2 321 aa23.59■■□□□ 1.37
TRIM54-202ENST00000380075 AGBL1Q96MI9 1066 aa23.59■■□□□ 1.37
TRIM54-202ENST00000380075 FUT8Q9BYC5 575 aa23.59■■□□□ 1.37
TRIM54-202ENST00000380075 LOXHD1Q8IVV2 1947 aa23.59■■□□□ 1.37
TRIM54-202ENST00000380075 AKAP3O75969 853 aa23.58■■□□□ 1.37
TRIM54-202ENST00000380075 ANXA13P27216 316 aa23.58■■□□□ 1.37
TRIM54-202ENST00000380075 TM4SF4P48230 202 aa23.58■■□□□ 1.37
TRIM54-202ENST00000380075 DMTNQ08495 405 aa23.58■■□□□ 1.37
TRIM54-202ENST00000380075 SLC18A3Q16572 532 aa23.58■■□□□ 1.37
TRIM54-202ENST00000380075 FASTKD5Q7L8L6 764 aaKnown RBP23.58■■□□□ 1.37
TRIM54-202ENST00000380075 PNKPQ96T60 521 aa23.58■■□□□ 1.37
TRIM54-202ENST00000380075 JADE2Q9NQC1 790 aa23.58■■□□□ 1.37
TRIM54-202ENST00000380075 TSKSQ9UJT2 592 aa23.58■■□□□ 1.37
TRIM54-202ENST00000380075 TARSL2A2RTX5 802 aaKnown RBP23.58■■□□□ 1.36
TRIM54-202ENST00000380075 BTBD19C9JJ37 291 aa23.58■■□□□ 1.36
TRIM54-202ENST00000380075 IGF2BP3O00425 579 aaKnown RBP eCLIP23.58■■□□□ 1.36
TRIM54-202ENST00000380075 TFRCP02786 760 aaKnown RBP23.58■■□□□ 1.36
TRIM54-202ENST00000380075 FDX1P10109 184 aa23.58■■□□□ 1.36
TRIM54-202ENST00000380075 TCP1P17987 556 aaKnown RBP23.58■■□□□ 1.36
TRIM54-202ENST00000380075 INHBEP58166 350 aa23.58■■□□□ 1.36
TRIM54-202ENST00000380075 ITIH3Q06033 890 aa23.58■■□□□ 1.36
TRIM54-202ENST00000380075 GFPT1Q06210 699 aaPredicted RBP23.58■■□□□ 1.36
TRIM54-202ENST00000380075 SREBF2Q12772 1141 aa23.58■■□□□ 1.36
TRIM54-202ENST00000380075 RAPGEF1Q13905 1077 aa23.58■■□□□ 1.36
TRIM54-202ENST00000380075 GPAT2Q6NUI2 795 aa23.58■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms