RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 C2CD6Q53TS8 623 aa9.3□□□□□ -0.92
LIG3-202ENST00000378526 MYLK2Q9H1R3 596 aa9.3□□□□□ -0.92
LIG3-202ENST00000378526 MRPL47Q9HD33 250 aaKnown RBP9.3□□□□□ -0.92
LIG3-202ENST00000378526 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.3□□□□□ -0.92
LIG3-202ENST00000378526 AURKCQ9UQB9 309 aa9.3□□□□□ -0.92
LIG3-202ENST00000378526 ARHGEF35A5YM69 484 aa9.3□□□□□ -0.92
LIG3-202ENST00000378526 A8MXQ7 604 aa9.3□□□□□ -0.92
LIG3-202ENST00000378526 PIK3R1P27986 724 aa9.3□□□□□ -0.92
LIG3-202ENST00000378526 TRPM8Q7Z2W7 1104 aa9.3□□□□□ -0.92
LIG3-202ENST00000378526 SYTL5Q8TDW5 730 aaPredicted RBP9.3□□□□□ -0.92
LIG3-202ENST00000378526 PCYOX1LQ8NBM8 494 aa9.3□□□□□ -0.92
LIG3-202ENST00000378526 SAP30BPQ9UHR5 308 aaKnown RBP9.3□□□□□ -0.92
LIG3-202ENST00000378526 APPL1Q9UKG1 709 aa9.3□□□□□ -0.92
LIG3-202ENST00000378526 VWA5AO00534 786 aa9.3□□□□□ -0.92
LIG3-202ENST00000378526 KLHL2O95198 593 aa9.3□□□□□ -0.92
LIG3-202ENST00000378526 EPHB1P54762 984 aa9.3□□□□□ -0.92
LIG3-202ENST00000378526 SPANXN2Q5MJ10 180 aa9.3□□□□□ -0.92
LIG3-202ENST00000378526 ITM2BQ9Y287 266 aa9.3□□□□□ -0.92
LIG3-202ENST00000378526 SH3GLB1Q9Y371 365 aa9.3□□□□□ -0.92
LIG3-202ENST00000378526 USP15Q9Y4E8 981 aaPredicted RBP9.3□□□□□ -0.92
LIG3-202ENST00000378526 H0YCG3 227 aa9.3□□□□□ -0.92
LIG3-202ENST00000378526 TNFAIP2Q03169 654 aa9.3□□□□□ -0.92
LIG3-202ENST00000378526 RRS1Q15050 365 aaKnown RBP9.3□□□□□ -0.92
LIG3-202ENST00000378526 GATAD2AQ86YP4 633 aa9.3□□□□□ -0.92
LIG3-202ENST00000378526 C8orf4Q9NR00 106 aa9.3□□□□□ -0.92
LIG3-202ENST00000378526 FAM32AQ9Y421 112 aaKnown RBP9.3□□□□□ -0.92
LIG3-202ENST00000378526 PMLP29590 882 aa9.3□□□□□ -0.92
LIG3-202ENST00000378526 UHMK1Q8TAS1 419 aaKnown RBP9.3□□□□□ -0.92
LIG3-202ENST00000378526 CUEDC2Q9H467 287 aa9.3□□□□□ -0.92
LIG3-202ENST00000378526 GRID2IPA4D2P6 1211 aa9.3□□□□□ -0.92
LIG3-202ENST00000378526 IKBKBO14920 756 aa9.3□□□□□ -0.92
LIG3-202ENST00000378526 AKAP10O43572 662 aa9.3□□□□□ -0.92
LIG3-202ENST00000378526 CDC37Q16543 378 aaPredicted RBP9.3□□□□□ -0.92
LIG3-202ENST00000378526 CALCRLQ16602 461 aa9.3□□□□□ -0.92
LIG3-202ENST00000378526 SKAP1Q86WV1 359 aa9.3□□□□□ -0.92
LIG3-202ENST00000378526 SMIM31A0A1B0GVY4 71 aa9.29□□□□□ -0.92
LIG3-202ENST00000378526 SLCO1A2P46721 670 aa9.29□□□□□ -0.92
LIG3-202ENST00000378526 ICA1Q05084 483 aa9.29□□□□□ -0.92
LIG3-202ENST00000378526 RGS21Q2M5E4 152 aa9.29□□□□□ -0.92
LIG3-202ENST00000378526 APOA5Q6Q788 366 aa9.29□□□□□ -0.92
LIG3-202ENST00000378526 HACE1Q8IYU2 909 aa9.29□□□□□ -0.92
LIG3-202ENST00000378526 H2AFY2Q9P0M6 372 aaPredicted RBP9.29□□□□□ -0.92
LIG3-202ENST00000378526 ARMCX3Q9UH62 379 aaPredicted RBP9.29□□□□□ -0.92
LIG3-202ENST00000378526 ZBTB21Q9ULJ3 1066 aa9.29□□□□□ -0.92
LIG3-202ENST00000378526 SYNCRIPO60506 623 aaKnown RBP9.29□□□□□ -0.92
LIG3-202ENST00000378526 C16orf62Q7Z3J2 963 aa9.29□□□□□ -0.92
LIG3-202ENST00000378526 PDCD6IPQ8WUM4 868 aaKnown RBP9.29□□□□□ -0.92
LIG3-202ENST00000378526 VPS50Q96JG6 964 aa9.29□□□□□ -0.92
LIG3-202ENST00000378526 RAPGEF2Q9Y4G8 1499 aa9.29□□□□□ -0.92
LIG3-202ENST00000378526 SMCO3A2RU48 225 aa9.29□□□□□ -0.92
LIG3-202ENST00000378526 HERC4Q5GLZ8 1057 aaPredicted RBP9.29□□□□□ -0.92
LIG3-202ENST00000378526 HABP4Q5JVS0 413 aaKnown RBP9.29□□□□□ -0.92
LIG3-202ENST00000378526 C6orf10Q5SRN2 563 aa9.29□□□□□ -0.92
LIG3-202ENST00000378526 SARM1Q6SZW1 724 aa9.29□□□□□ -0.92
LIG3-202ENST00000378526 CDC37L1Q7L3B6 337 aa9.29□□□□□ -0.92
LIG3-202ENST00000378526 DNAAF3Q8N9W5 541 aa9.29□□□□□ -0.92
LIG3-202ENST00000378526 NFU1Q9UMS0 254 aa9.29□□□□□ -0.92
LIG3-202ENST00000378526 MAP3K5Q99683 1374 aa9.29□□□□□ -0.92
LIG3-202ENST00000378526 LPXNO60711 386 aa9.29□□□□□ -0.92
LIG3-202ENST00000378526 TNFRSF21O75509 655 aa9.29□□□□□ -0.92
LIG3-202ENST00000378526 ATP2B4P23634 1241 aa9.29□□□□□ -0.92
LIG3-202ENST00000378526 IMPG1Q17R60 797 aa9.29□□□□□ -0.92
LIG3-202ENST00000378526 ARMCX5Q6P1M9 558 aa9.29□□□□□ -0.92
LIG3-202ENST00000378526 SPATA21Q7Z572 469 aa9.29□□□□□ -0.92
LIG3-202ENST00000378526 DGCR14Q96DF8 476 aaKnown RBP9.29□□□□□ -0.92
LIG3-202ENST00000378526 NLRC4Q9NPP4 1024 aa9.29□□□□□ -0.92
LIG3-202ENST00000378526 TJP3O95049 919 aa9.29□□□□□ -0.92
LIG3-202ENST00000378526 ACSL3O95573 720 aa9.29□□□□□ -0.92
LIG3-202ENST00000378526 ATF3P18847 181 aa9.29□□□□□ -0.92
LIG3-202ENST00000378526 WARSP23381 471 aaKnown RBP9.29□□□□□ -0.92
LIG3-202ENST00000378526 ITKQ08881 620 aa9.29□□□□□ -0.92
LIG3-202ENST00000378526 RIPPLY1Q0D2K3 151 aa9.29□□□□□ -0.92
LIG3-202ENST00000378526 TMEM63CQ9P1W3 806 aa9.29□□□□□ -0.92
LIG3-202ENST00000378526 DSEQ9UL01 958 aa9.29□□□□□ -0.92
LIG3-202ENST00000378526 MAPK8IP1Q9UQF2 711 aa9.29□□□□□ -0.92
LIG3-202ENST00000378526 PCDHB13Q9Y5F0 798 aa9.29□□□□□ -0.92
LIG3-202ENST00000378526 AOX1Q06278 1338 aa9.29□□□□□ -0.92
LIG3-202ENST00000378526 CLHC1Q8NHS4 586 aa9.29□□□□□ -0.92
LIG3-202ENST00000378526 SELENONQ9NZV5 590 aa9.29□□□□□ -0.92
LIG3-202ENST00000378526 SMG5Q9UPR3 1016 aaKnown RBP9.29□□□□□ -0.92
LIG3-202ENST00000378526 AP3B1O00203 1094 aa9.28□□□□□ -0.92
LIG3-202ENST00000378526 ZBTB24O43167 697 aaPredicted RBP9.28□□□□□ -0.92
LIG3-202ENST00000378526 ITGA1P56199 1179 aa9.28□□□□□ -0.92
LIG3-202ENST00000378526 RAB25P57735 213 aa9.28□□□□□ -0.92
LIG3-202ENST00000378526 PLS1Q14651 629 aa9.28□□□□□ -0.92
LIG3-202ENST00000378526 TTC38Q5R3I4 469 aa9.28□□□□□ -0.92
LIG3-202ENST00000378526 KLHL24Q6TFL4 600 aa9.28□□□□□ -0.92
LIG3-202ENST00000378526 P3H2Q8IVL5 708 aa9.28□□□□□ -0.92
LIG3-202ENST00000378526 GRPEL2Q8TAA5 225 aa9.28□□□□□ -0.92
LIG3-202ENST00000378526 DCLRE1BQ9H816 532 aa9.28□□□□□ -0.92
LIG3-202ENST00000378526 ZWILCHQ9H900 591 aa9.28□□□□□ -0.92
LIG3-202ENST00000378526 NOD2Q9HC29 1040 aa9.28□□□□□ -0.92
LIG3-202ENST00000378526 CABP2Q9NPB3 220 aa9.28□□□□□ -0.92
LIG3-202ENST00000378526 CACNA2D2Q9NY47 1150 aa9.28□□□□□ -0.92
LIG3-202ENST00000378526 FIS1Q9Y3D6 152 aa9.28□□□□□ -0.92
LIG3-202ENST00000378526 GOLGA4Q13439 2230 aaKnown RBP9.28□□□□□ -0.92
LIG3-202ENST00000378526 SKAP2O75563 359 aaPredicted RBP9.28□□□□□ -0.92
LIG3-202ENST00000378526 EXOSC10Q01780 885 aaKnown RBP9.28□□□□□ -0.92
LIG3-202ENST00000378526 SUGP1Q8IWZ8 645 aaKnown RBP9.28□□□□□ -0.92
LIG3-202ENST00000378526 MYH6P13533 1939 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms