RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 OTUD6AQ7L8S5 288 aa14.94□□□□□ -0.02
VPS28-202ENST00000377348 POLR3CQ9BUI4 534 aaPredicted RBP14.94□□□□□ -0.02
VPS28-202ENST00000377348 AGO3Q9H9G7 860 aaKnown RBP14.94□□□□□ -0.02
VPS28-202ENST00000377348 TUFT1Q9NNX1 390 aa14.94□□□□□ -0.02
VPS28-202ENST00000377348 IGKV6-21A0A0C4DH24 114 aa14.93□□□□□ -0.02
VPS28-202ENST00000377348 GPR32O75388 356 aa14.93□□□□□ -0.02
VPS28-202ENST00000377348 RPLP2P05387 115 aaKnown RBP14.93□□□□□ -0.02
VPS28-202ENST00000377348 RPA1P27694 616 aa14.93□□□□□ -0.02
VPS28-202ENST00000377348 TMOD1P28289 359 aa14.93□□□□□ -0.02
VPS28-202ENST00000377348 CD52P31358 61 aa14.93□□□□□ -0.02
VPS28-202ENST00000377348 PDIA5Q14554 519 aa14.93□□□□□ -0.02
VPS28-202ENST00000377348 TMCO2Q7Z6W1 182 aaPredicted RBP14.93□□□□□ -0.02
VPS28-202ENST00000377348 ERMNQ8TAM6 284 aa14.93□□□□□ -0.02
VPS28-202ENST00000377348 SNX29Q8TEQ0 813 aa14.93□□□□□ -0.02
VPS28-202ENST00000377348 TMEM40Q8WWA1 233 aa14.93□□□□□ -0.02
VPS28-202ENST00000377348 SEPT8Q92599 483 aa14.93□□□□□ -0.02
VPS28-202ENST00000377348 MAP7D2Q96T17 732 aa14.93□□□□□ -0.02
VPS28-202ENST00000377348 OSMRQ99650 979 aa14.93□□□□□ -0.02
VPS28-202ENST00000377348 IFIH1Q9BYX4 1025 aaKnown RBP14.93□□□□□ -0.02
VPS28-202ENST00000377348 MTIF3Q9H2K0 278 aaKnown RBP14.93□□□□□ -0.02
VPS28-202ENST00000377348 ZSCAN16Q9H4T2 348 aaPredicted RBP14.93□□□□□ -0.02
VPS28-202ENST00000377348 SLC4A7Q9Y6M7 1214 aa14.93□□□□□ -0.02
VPS28-202ENST00000377348 KDM3AQ9Y4C1 1321 aa14.92□□□□□ -0.02
VPS28-202ENST00000377348 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.92□□□□□ -0.02
VPS28-202ENST00000377348 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.92□□□□□ -0.02
VPS28-202ENST00000377348 BAIAP3O94812 1187 aa14.92□□□□□ -0.02
VPS28-202ENST00000377348 RARRES1P49788 294 aa14.92□□□□□ -0.02
VPS28-202ENST00000377348 POLGP54098 1239 aaPredicted RBP14.92□□□□□ -0.02
VPS28-202ENST00000377348 NLRP11P59045 1033 aaKnown RBP14.92□□□□□ -0.02
VPS28-202ENST00000377348 WDR5P61964 334 aaKnown RBP14.92□□□□□ -0.02
VPS28-202ENST00000377348 DEFB103AP81534 67 aa14.92□□□□□ -0.02
VPS28-202ENST00000377348 GRIN1Q05586 938 aa14.92□□□□□ -0.02
VPS28-202ENST00000377348 IKBKEQ14164 716 aa14.92□□□□□ -0.02
VPS28-202ENST00000377348 EMC2Q15006 297 aa14.92□□□□□ -0.02
VPS28-202ENST00000377348 PTPAQ15257 358 aa14.92□□□□□ -0.02
VPS28-202ENST00000377348 FOXD4L6Q3SYB3 417 aaPredicted RBP14.92□□□□□ -0.02
VPS28-202ENST00000377348 HAUS3Q68CZ6 603 aa14.92□□□□□ -0.02
VPS28-202ENST00000377348 FOXD4L3Q6VB84 417 aaPredicted RBP14.92□□□□□ -0.02
VPS28-202ENST00000377348 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.92□□□□□ -0.02
VPS28-202ENST00000377348 TSHZ1Q6ZSZ6 1077 aa14.92□□□□□ -0.02
VPS28-202ENST00000377348 TMEM143Q96AN5 459 aa14.92□□□□□ -0.02
VPS28-202ENST00000377348 USP28Q96RU2 1077 aa14.92□□□□□ -0.02
VPS28-202ENST00000377348 MMTAG2Q9BU76 263 aaKnown RBP14.92□□□□□ -0.02
VPS28-202ENST00000377348 RAB34Q9BZG1 259 aa14.92□□□□□ -0.02
VPS28-202ENST00000377348 ADAMTS10Q9H324 1103 aa14.92□□□□□ -0.02
VPS28-202ENST00000377348 DHX33Q9H6R0 707 aaKnown RBP14.92□□□□□ -0.02
VPS28-202ENST00000377348 ANKEF1Q9NU02 776 aa14.92□□□□□ -0.02
VPS28-202ENST00000377348 SUCLA2Q9P2R7 463 aaPredicted RBP14.92□□□□□ -0.02
VPS28-202ENST00000377348 NOC2LQ9Y3T9 749 aaKnown RBP14.92□□□□□ -0.02
VPS28-202ENST00000377348 CDH23Q9H251 3354 aa14.91□□□□□ -0.02
VPS28-202ENST00000377348 BMP15O95972 392 aa14.91□□□□□ -0.02
VPS28-202ENST00000377348 ZSCAN22P10073 491 aaPredicted RBP14.91□□□□□ -0.02
VPS28-202ENST00000377348 ATP2A2P16615 1042 aaKnown RBP14.91□□□□□ -0.02
VPS28-202ENST00000377348 MARCKSP29966 332 aaPredicted RBP14.91□□□□□ -0.02
VPS28-202ENST00000377348 PBX2P40425 430 aa14.91□□□□□ -0.02
VPS28-202ENST00000377348 RFC5P40937 340 aa14.91□□□□□ -0.02
VPS28-202ENST00000377348 KCNJ6P48051 423 aa14.91□□□□□ -0.02
VPS28-202ENST00000377348 GPC3P51654 580 aa14.91□□□□□ -0.02
VPS28-202ENST00000377348 RABGGTBP53611 331 aa14.91□□□□□ -0.02
VPS28-202ENST00000377348 BECN1Q14457 450 aa14.91□□□□□ -0.02
VPS28-202ENST00000377348 ZRSR1Q15695 479 aaKnown RBP14.91□□□□□ -0.02
VPS28-202ENST00000377348 KRT79Q5XKE5 535 aa14.91□□□□□ -0.02
VPS28-202ENST00000377348 ARL6IP4Q66PJ3 421 aaKnown RBP14.91□□□□□ -0.02
VPS28-202ENST00000377348 KSR1Q8IVT5 923 aa14.91□□□□□ -0.02
VPS28-202ENST00000377348 SLC7A3Q8WY07 619 aa14.91□□□□□ -0.02
VPS28-202ENST00000377348 CCDC43Q96MW1 224 aaKnown RBP14.91□□□□□ -0.02
VPS28-202ENST00000377348 NACC1Q96RE7 527 aa14.91□□□□□ -0.02
VPS28-202ENST00000377348 XPNPEP1Q9NQW7 623 aa14.91□□□□□ -0.02
VPS28-202ENST00000377348 PADI3Q9ULW8 664 aa14.91□□□□□ -0.02
VPS28-202ENST00000377348 KIAA1024Q9UPX6 916 aa14.91□□□□□ -0.02
VPS28-202ENST00000377348 ABHD14A-ACY1A0A1B0GW23 586 aa14.9□□□□□ -0.02
VPS28-202ENST00000377348 USO1O60763 962 aaKnown RBP14.9□□□□□ -0.02
VPS28-202ENST00000377348 F13A1P00488 732 aa14.9□□□□□ -0.02
VPS28-202ENST00000377348 DNM2P50570 870 aa14.9□□□□□ -0.02
VPS28-202ENST00000377348 CRYBB1P53674 252 aaPredicted RBP14.9□□□□□ -0.02
VPS28-202ENST00000377348 SMAD3P84022 425 aaKnown RBP14.9□□□□□ -0.02
VPS28-202ENST00000377348 FAM228AQ86W67 206 aa14.9□□□□□ -0.02
VPS28-202ENST00000377348 RHPN2Q8IUC4 686 aa14.9□□□□□ -0.02
VPS28-202ENST00000377348 NLRP7Q8WX94 980 aa14.9□□□□□ -0.02
VPS28-202ENST00000377348 APBB2Q92870 758 aa14.9□□□□□ -0.02
VPS28-202ENST00000377348 SCLT1Q96NL6 688 aa14.9□□□□□ -0.02
VPS28-202ENST00000377348 PLIN2Q99541 437 aa14.9□□□□□ -0.02
VPS28-202ENST00000377348 MTRQ99707 1265 aa14.9□□□□□ -0.02
VPS28-202ENST00000377348 JPH2Q9BR39 696 aaPredicted RBP14.9□□□□□ -0.02
VPS28-202ENST00000377348 PBX4Q9BYU1 374 aa14.9□□□□□ -0.02
VPS28-202ENST00000377348 DDX19AQ9NUU7 478 aaKnown RBP14.9□□□□□ -0.02
VPS28-202ENST00000377348 PPME1Q9Y570 386 aa14.9□□□□□ -0.02
VPS28-202ENST00000377348 SQORQ9Y6N5 450 aa14.9□□□□□ -0.02
VPS28-202ENST00000377348 ARID2Q68CP9 1835 aa14.89□□□□□ -0.03
VPS28-202ENST00000377348 LOC101059915A0A1B0GWI6 518 aaPredicted RBP14.89□□□□□ -0.03
VPS28-202ENST00000377348 E9PMD0 336 aa14.89□□□□□ -0.03
VPS28-202ENST00000377348 CSDE1O75534 798 aaKnown RBP14.89□□□□□ -0.03
VPS28-202ENST00000377348 RPS6KA5O75582 802 aa14.89□□□□□ -0.03
VPS28-202ENST00000377348 XRCC6P12956 609 aaKnown RBP eCLIP14.89□□□□□ -0.037e-6■□□□□ 8.8
VPS28-202ENST00000377348 MYOGP15173 224 aa14.89□□□□□ -0.03
VPS28-202ENST00000377348 FGFR4P22455 802 aa14.89□□□□□ -0.03
VPS28-202ENST00000377348 NFX1Q12986 1120 aaKnown RBP14.89□□□□□ -0.03
VPS28-202ENST00000377348 PAK2Q13177 524 aa14.89□□□□□ -0.03
VPS28-202ENST00000377348 SPECC1Q5M775 1068 aa14.89□□□□□ -0.03
VPS28-202ENST00000377348 FAM117BQ6P1L5 589 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms