RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 GPR182O15218 404 aa24.44■■□□□ 1.5
CCDC28B-201ENST00000373602 RB1P06400 928 aa24.44■■□□□ 1.5
CCDC28B-201ENST00000373602 STAG3L1P0CL83 205 aa24.44■■□□□ 1.5
CCDC28B-201ENST00000373602 GCFC2P16383 781 aaKnown RBP24.44■■□□□ 1.5
CCDC28B-201ENST00000373602 TMOD1P28289 359 aa24.44■■□□□ 1.5
CCDC28B-201ENST00000373602 BMPR1AP36894 532 aa24.44■■□□□ 1.5
CCDC28B-201ENST00000373602 NSUN7Q8NE18 718 aaKnown RBP24.44■■□□□ 1.5
CCDC28B-201ENST00000373602 IL27Q8NEV9 243 aa24.44■■□□□ 1.5
CCDC28B-201ENST00000373602 MAP7D2Q96T17 732 aa24.44■■□□□ 1.5
CCDC28B-201ENST00000373602 VCANP13611 3396 aa24.44■■□□□ 1.5
CCDC28B-201ENST00000373602 MGEA5O60502 916 aa24.43■■□□□ 1.5
CCDC28B-201ENST00000373602 STBD1O95210 358 aa24.43■■□□□ 1.5
CCDC28B-201ENST00000373602 BMP1P13497 986 aa24.43■■□□□ 1.5
CCDC28B-201ENST00000373602 CTNNB1P35222 781 aa24.43■■□□□ 1.5
CCDC28B-201ENST00000373602 TARBP2Q15633 366 aaKnown RBP24.43■■□□□ 1.5
CCDC28B-201ENST00000373602 XKR3Q5GH77 459 aa24.43■■□□□ 1.5
CCDC28B-201ENST00000373602 FAM228AQ86W67 206 aa24.43■■□□□ 1.5
CCDC28B-201ENST00000373602 CMTR2Q8IYT2 770 aaKnown RBP24.43■■□□□ 1.5
CCDC28B-201ENST00000373602 ZNF710Q8N1W2 664 aa24.43■■□□□ 1.5
CCDC28B-201ENST00000373602 LRRC71Q8N4P6 559 aa24.43■■□□□ 1.5
CCDC28B-201ENST00000373602 ADAMTS19Q8TE59 1207 aa24.43■■□□□ 1.5
CCDC28B-201ENST00000373602 FAM20AQ96MK3 541 aa24.43■■□□□ 1.5
CCDC28B-201ENST00000373602 NAP1L4Q99733 375 aaKnown RBP24.43■■□□□ 1.5
CCDC28B-201ENST00000373602 NIFKQ9BYG3 293 aaKnown RBP24.43■■□□□ 1.5
CCDC28B-201ENST00000373602 AKT3Q9Y243 479 aa24.43■■□□□ 1.5
CCDC28B-201ENST00000373602 TTC28Q96AY4 2481 aa24.43■■□□□ 1.5
CCDC28B-201ENST00000373602 SARSP49591 514 aaKnown RBP24.42■■□□□ 1.5
CCDC28B-201ENST00000373602 NLRP11P59045 1033 aaKnown RBP24.42■■□□□ 1.5
CCDC28B-201ENST00000373602 EARS2Q5JPH6 523 aaKnown RBP24.42■■□□□ 1.5
CCDC28B-201ENST00000373602 ADAMTS10Q9H324 1103 aa24.42■■□□□ 1.5
CCDC28B-201ENST00000373602 RGS18Q9NS28 235 aa24.42■■□□□ 1.5
CCDC28B-201ENST00000373602 C1orf112Q9NSG2 853 aa24.42■■□□□ 1.5
CCDC28B-201ENST00000373602 CCNT1O60563 726 aaKnown RBP24.41■■□□□ 1.5
CCDC28B-201ENST00000373602 KRT2P35908 639 aa24.41■■□□□ 1.5
CCDC28B-201ENST00000373602 KCNQ1P51787 676 aa24.41■■□□□ 1.5
CCDC28B-201ENST00000373602 TBC1D8BQ0IIM8 1120 aa24.41■■□□□ 1.5
CCDC28B-201ENST00000373602 PPP2R5CQ13362 524 aa24.41■■□□□ 1.5
CCDC28B-201ENST00000373602 TNFRSF25Q93038 417 aa24.41■■□□□ 1.5
CCDC28B-201ENST00000373602 CEP89Q96ST8 783 aa24.41■■□□□ 1.5
CCDC28B-201ENST00000373602 ADAM2Q99965 735 aa24.41■■□□□ 1.5
CCDC28B-201ENST00000373602 C11orf84Q9BUA3 381 aaPredicted RBP24.41■■□□□ 1.5
CCDC28B-201ENST00000373602 SEPT9Q9UHD8 586 aaPredicted RBP24.41■■□□□ 1.5
CCDC28B-201ENST00000373602 VAV3Q9UKW4 847 aa24.41■■□□□ 1.5
CCDC28B-201ENST00000373602 LRFN2Q9ULH4 789 aa24.41■■□□□ 1.5
CCDC28B-201ENST00000373602 DENND3A2RUS2 1198 aa24.4■■□□□ 1.5
CCDC28B-201ENST00000373602 EML1O00423 815 aa24.4■■□□□ 1.5
CCDC28B-201ENST00000373602 TBX3O15119 743 aa24.4■■□□□ 1.5
CCDC28B-201ENST00000373602 NR5A1Q13285 461 aa24.4■■□□□ 1.5
CCDC28B-201ENST00000373602 TIGD5Q53EQ6 642 aa24.4■■□□□ 1.5
CCDC28B-201ENST00000373602 SLC24A5Q71RS6 500 aa24.4■■□□□ 1.5
CCDC28B-201ENST00000373602 BANK1Q8NDB2 785 aa24.4■■□□□ 1.5
CCDC28B-201ENST00000373602 HAS1Q92839 578 aa24.4■■□□□ 1.5
CCDC28B-201ENST00000373602 UHRF1Q96T88 793 aaPredicted RBP24.4■■□□□ 1.5
CCDC28B-201ENST00000373602 PLVAPQ9BX97 442 aa24.4■■□□□ 1.5
CCDC28B-201ENST00000373602 BRMS1Q9HCU9 246 aa24.4■■□□□ 1.5
CCDC28B-201ENST00000373602 PCDHB7Q9Y5E2 793 aa24.4■■□□□ 1.5
CCDC28B-201ENST00000373602 MRPL42Q9Y6G3 142 aaKnown RBP24.4■■□□□ 1.5
CCDC28B-201ENST00000373602 FAM205CA6NFA0 338 aa24.39■■□□□ 1.49
CCDC28B-201ENST00000373602 C9IYK1 514 aa24.39■■□□□ 1.49
CCDC28B-201ENST00000373602 JAK2O60674 1132 aa24.39■■□□□ 1.49
CCDC28B-201ENST00000373602 GPC3P51654 580 aa24.39■■□□□ 1.49
CCDC28B-201ENST00000373602 PSMC5P62195 406 aa24.39■■□□□ 1.49
CCDC28B-201ENST00000373602 ST3GAL1Q11201 340 aa24.39■■□□□ 1.49
CCDC28B-201ENST00000373602 DSC3Q14574 896 aa24.39■■□□□ 1.49
CCDC28B-201ENST00000373602 MTERF2Q49AM1 385 aa24.39■■□□□ 1.49
CCDC28B-201ENST00000373602 LMAN2LQ9H0V9 348 aa24.39■■□□□ 1.49
CCDC28B-201ENST00000373602 RNF216Q9NWF9 866 aaPredicted RBP24.39■■□□□ 1.49
CCDC28B-201ENST00000373602 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP24.38■■□□□ 1.49
CCDC28B-201ENST00000373602 IGKV6-21A0A0C4DH24 114 aa24.38■■□□□ 1.49
CCDC28B-201ENST00000373602 TMEM150BA6NC51 233 aa24.38■■□□□ 1.49
CCDC28B-201ENST00000373602 TNFRSF10AO00220 468 aa24.38■■□□□ 1.49
CCDC28B-201ENST00000373602 EIF4BP23588 611 aaKnown RBP24.38■■□□□ 1.49
CCDC28B-201ENST00000373602 GATMP50440 423 aa24.38■■□□□ 1.49
CCDC28B-201ENST00000373602 SPTBN5Q9NRC6 3674 aaKnown RBP24.38■■□□□ 1.49
CCDC28B-201ENST00000373602 REV3LO60673 3130 aa24.37■■□□□ 1.49
CCDC28B-201ENST00000373602 DDX11L8A8MPP1 907 aa24.37■■□□□ 1.49
CCDC28B-201ENST00000373602 GRM6O15303 877 aa24.37■■□□□ 1.49
CCDC28B-201ENST00000373602 MMP1P03956 469 aa24.37■■□□□ 1.49
CCDC28B-201ENST00000373602 FAM189BP81408 668 aa24.37■■□□□ 1.49
CCDC28B-201ENST00000373602 DRP2Q13474 957 aa24.37■■□□□ 1.49
CCDC28B-201ENST00000373602 PAN2Q504Q3 1202 aaKnown RBP24.37■■□□□ 1.49
CCDC28B-201ENST00000373602 ANO5Q75V66 913 aa24.37■■□□□ 1.49
CCDC28B-201ENST00000373602 POTEDQ86YR6 584 aa24.37■■□□□ 1.49
CCDC28B-201ENST00000373602 P2RX5Q93086 422 aa24.37■■□□□ 1.49
CCDC28B-201ENST00000373602 NSUN3Q9H649 340 aaKnown RBP24.37■■□□□ 1.49
CCDC28B-201ENST00000373602 UBE2ZQ9H832 354 aaPredicted RBP24.37■■□□□ 1.49
CCDC28B-201ENST00000373602 TCF20Q9UGU0 1960 aaKnown RBP24.36■■□□□ 1.49
CCDC28B-201ENST00000373602 P4HBP07237 508 aaKnown RBP24.36■■□□□ 1.49
CCDC28B-201ENST00000373602 DARSP14868 501 aaKnown RBP24.36■■□□□ 1.49
CCDC28B-201ENST00000373602 IBSPP21815 317 aaPredicted RBP24.36■■□□□ 1.49
CCDC28B-201ENST00000373602 QARSP47897 775 aaKnown RBP24.36■■□□□ 1.49
CCDC28B-201ENST00000373602 CDC42EP1Q00587 391 aa24.36■■□□□ 1.49
CCDC28B-201ENST00000373602 ZNF668Q96K58 619 aaPredicted RBP24.36■■□□□ 1.49
CCDC28B-201ENST00000373602 SH2D3AQ9BRG2 576 aa24.36■■□□□ 1.49
CCDC28B-201ENST00000373602 ELAC1Q9H777 363 aaKnown RBP24.36■■□□□ 1.49
CCDC28B-201ENST00000373602 LIMCH1Q9UPQ0 1083 aa24.36■■□□□ 1.49
CCDC28B-201ENST00000373602 BRWD1Q9NSI6 2320 aa24.35■■□□□ 1.49
CCDC28B-201ENST00000373602 BTBD18B2RXH4 712 aa24.35■■□□□ 1.49
CCDC28B-201ENST00000373602 MARCH6O60337 910 aa24.35■■□□□ 1.49
CCDC28B-201ENST00000373602 DKC1O60832 514 aaKnown RBP eCLIP24.35■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms