RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 IQANK1A0A1B0GTG1 560 aa12.27□□□□□ -0.44
PTPRF-203ENST00000372407 SFI1A8K8P3 1242 aa12.27□□□□□ -0.44
PTPRF-203ENST00000372407 SPECC1L-ADORA2AF8WAN1 911 aa12.27□□□□□ -0.44
PTPRF-203ENST00000372407 TEX33O43247 280 aa12.27□□□□□ -0.44
PTPRF-203ENST00000372407 KRT37O76014 449 aa12.27□□□□□ -0.44
PTPRF-203ENST00000372407 NAA30Q147X3 362 aaPredicted RBP12.27□□□□□ -0.44
PTPRF-203ENST00000372407 TAF11Q15544 211 aa12.27□□□□□ -0.44
PTPRF-203ENST00000372407 EZH2Q15910 746 aaKnown RBP12.27□□□□□ -0.44
PTPRF-203ENST00000372407 ERICH1Q86X53 443 aa12.27□□□□□ -0.44
PTPRF-203ENST00000372407 DCPSQ96C86 337 aaKnown RBP12.27□□□□□ -0.44
PTPRF-203ENST00000372407 SPDL1Q96EA4 605 aa12.27□□□□□ -0.44
PTPRF-203ENST00000372407 FAM20AQ96MK3 541 aa12.27□□□□□ -0.44
PTPRF-203ENST00000372407 SPATS2LQ9NUQ6 558 aaKnown RBP12.27□□□□□ -0.44
PTPRF-203ENST00000372407 DNAJC17Q9NVM6 304 aaKnown RBP12.27□□□□□ -0.44
PTPRF-203ENST00000372407 ADAM22Q9P0K1 906 aa12.27□□□□□ -0.44
PTPRF-203ENST00000372407 WDR91A4D1P6 747 aa12.27□□□□□ -0.45
PTPRF-203ENST00000372407 TOM1L1O75674 476 aa12.27□□□□□ -0.45
PTPRF-203ENST00000372407 NR3C1P04150 777 aa12.27□□□□□ -0.45
PTPRF-203ENST00000372407 SPARCL1Q14515 664 aa12.27□□□□□ -0.45
PTPRF-203ENST00000372407 SUPT20HL1Q3ZLR7 823 aa12.27□□□□□ -0.45
PTPRF-203ENST00000372407 TBC1D1Q86TI0 1168 aaPredicted RBP12.27□□□□□ -0.45
PTPRF-203ENST00000372407 TADA2BQ86TJ2 420 aa12.27□□□□□ -0.45
PTPRF-203ENST00000372407 TRIM56Q9BRZ2 755 aaKnown RBP12.27□□□□□ -0.45
PTPRF-203ENST00000372407 CNOT8Q9UFF9 292 aaKnown RBP12.27□□□□□ -0.45
PTPRF-203ENST00000372407 SCOCQ9UIL1 159 aa12.27□□□□□ -0.45
PTPRF-203ENST00000372407 ANAPC7Q9UJX3 599 aa12.27□□□□□ -0.45
PTPRF-203ENST00000372407 FRMD3A2A2Y4 597 aa12.27□□□□□ -0.45
PTPRF-203ENST00000372407 MMEP08473 750 aa12.27□□□□□ -0.45
PTPRF-203ENST00000372407 CDC27P30260 824 aa12.27□□□□□ -0.45
PTPRF-203ENST00000372407 CCND2P30279 289 aa12.27□□□□□ -0.45
PTPRF-203ENST00000372407 ESRRGP62508 458 aa12.27□□□□□ -0.45
PTPRF-203ENST00000372407 DPP9Q86TI2 863 aa12.27□□□□□ -0.45
PTPRF-203ENST00000372407 SFR1Q86XK3 245 aa12.27□□□□□ -0.45
PTPRF-203ENST00000372407 PIGOQ8TEQ8 1089 aa12.27□□□□□ -0.45
PTPRF-203ENST00000372407 TJP3O95049 919 aa12.26□□□□□ -0.45
PTPRF-203ENST00000372407 LDHAP00338 332 aaKnown RBP12.26□□□□□ -0.45
PTPRF-203ENST00000372407 CYP2D6P10635 497 aa12.26□□□□□ -0.45
PTPRF-203ENST00000372407 GPC5P78333 572 aa12.26□□□□□ -0.45
PTPRF-203ENST00000372407 MYO1EQ12965 1108 aa12.26□□□□□ -0.45
PTPRF-203ENST00000372407 E2F4Q16254 413 aa12.26□□□□□ -0.45
PTPRF-203ENST00000372407 ANKRD20A4Q4UJ75 823 aa12.26□□□□□ -0.45
PTPRF-203ENST00000372407 ANKRD20A8PQ5CZ79 823 aa12.26□□□□□ -0.45
PTPRF-203ENST00000372407 ANKRD20A2Q5SQ80 823 aa12.26□□□□□ -0.45
PTPRF-203ENST00000372407 ANKRD20A1Q5TYW2 823 aa12.26□□□□□ -0.45
PTPRF-203ENST00000372407 ZNF449Q6P9G9 518 aa12.26□□□□□ -0.45
PTPRF-203ENST00000372407 C4orf50Q6ZRC1 276 aa12.26□□□□□ -0.45
PTPRF-203ENST00000372407 RPAINQ86UA6 219 aa12.26□□□□□ -0.45
PTPRF-203ENST00000372407 TMEM35BQ8NCS4 154 aa12.26□□□□□ -0.45
PTPRF-203ENST00000372407 DCP1AQ9NPI6 582 aaPredicted RBP12.26□□□□□ -0.45
PTPRF-203ENST00000372407 UBN2Q6ZU65 1347 aa12.26□□□□□ -0.45
PTPRF-203ENST00000372407 CD163L1Q9NR16 1453 aa12.26□□□□□ -0.45
PTPRF-203ENST00000372407 ESYT2A0FGR8 921 aa12.26□□□□□ -0.45
PTPRF-203ENST00000372407 RC3H1Q5TC82 1133 aaKnown RBP12.26□□□□□ -0.45
PTPRF-203ENST00000372407 ATP6V1E2Q96A05 226 aa12.26□□□□□ -0.45
PTPRF-203ENST00000372407 EDEM3Q9BZQ6 932 aa12.26□□□□□ -0.45
PTPRF-203ENST00000372407 A0A1W2PQC6 194 aa12.26□□□□□ -0.45
PTPRF-203ENST00000372407 ANKRD65E5RJM6 399 aa12.26□□□□□ -0.45
PTPRF-203ENST00000372407 ASNSP08243 561 aa12.26□□□□□ -0.45
PTPRF-203ENST00000372407 SETSIPP0DME0 302 aa12.26□□□□□ -0.45
PTPRF-203ENST00000372407 STMN1P16949 149 aa12.26□□□□□ -0.45
PTPRF-203ENST00000372407 MX2P20592 715 aa12.26□□□□□ -0.45
PTPRF-203ENST00000372407 ATG16L1Q676U5 607 aa12.26□□□□□ -0.45
PTPRF-203ENST00000372407 SHC4Q6S5L8 630 aa12.26□□□□□ -0.45
PTPRF-203ENST00000372407 MCPH1Q8NEM0 835 aa12.26□□□□□ -0.45
PTPRF-203ENST00000372407 NUDCD1Q96RS6 583 aa12.26□□□□□ -0.45
PTPRF-203ENST00000372407 OSBPL9Q96SU4 736 aa12.26□□□□□ -0.45
PTPRF-203ENST00000372407 NGRNQ9NPE2 291 aaKnown RBP12.26□□□□□ -0.45
PTPRF-203ENST00000372407 GINM1Q9NU53 330 aa12.26□□□□□ -0.45
PTPRF-203ENST00000372407 FGFR1OP2Q9NVK5 253 aa12.26□□□□□ -0.45
PTPRF-203ENST00000372407 CHUKO15111 745 aa12.26□□□□□ -0.45
PTPRF-203ENST00000372407 NBPF9Q3BBW0 867 aa12.26□□□□□ -0.45
PTPRF-203ENST00000372407 MMS22LQ6ZRQ5 1243 aa12.26□□□□□ -0.45
PTPRF-203ENST00000372407 BZW1Q7L1Q6 419 aaKnown RBP12.26□□□□□ -0.45
PTPRF-203ENST00000372407 RNF168Q8IYW5 571 aaPredicted RBP12.26□□□□□ -0.45
PTPRF-203ENST00000372407 RBM41Q96IZ5 413 aaKnown RBP12.26□□□□□ -0.45
PTPRF-203ENST00000372407 ZCCHC17Q9NP64 241 aaKnown RBP12.26□□□□□ -0.45
PTPRF-203ENST00000372407 USP27XA6NNY8 438 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 DCTN3O75935 186 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 GGCXP38435 758 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 BIRC2Q13490 618 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 TFDP2Q14188 446 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 RTKN2Q8IZC4 609 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 MSTO1Q9BUK6 570 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 KIAA1586Q9HCI6 787 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 PCDHA6Q9UN73 950 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 PCDHA8Q9Y5H6 950 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 LPXNO60711 386 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 PPFIA2O75334 1257 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 NR1H3Q13133 447 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 SPOPLQ6IQ16 392 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 WDR75Q8IWA0 830 aaKnown RBP12.25□□□□□ -0.45
PTPRF-203ENST00000372407 TTC13Q8NBP0 860 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 SH3RF3Q8TEJ3 882 aaPredicted RBP12.25□□□□□ -0.45
PTPRF-203ENST00000372407 CALR3Q96L12 384 aaKnown RBP12.25□□□□□ -0.45
PTPRF-203ENST00000372407 KIF2CQ99661 725 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 DRC3Q9H069 523 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 CPVLQ9H3G5 476 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 E9PMD0 336 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 GH2P01242 217 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 OSTNP61366 133 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms