RNA–Protein interactions for RNA: ENST00000370576.8

MCF2-203, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MCF2, Length 3,688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-203ENST00000370576 GLIS3Q8NEA6 775 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 C8orf76Q96K31 380 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 MKNK1Q9BUB5 465 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 C2CD2Q9Y426 696 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 C2orf81A6NN90 581 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 SLC7A4O43246 635 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 CD9P21926 228 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 CRKP46108 304 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 DMTNQ08495 405 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 IFIT5Q13325 482 aaKnown RBP4.39□□□□□ -1.71
MCF2-203ENST00000370576 AP3B2Q13367 1082 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 TNIP1Q15025 636 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 C21orf62-AS1Q17RA5 79 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 VWA3BQ502W6 1294 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 SRLQ86TD4 932 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 AACSQ86V21 672 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 COL23A1Q86Y22 540 aaPredicted RBP4.39□□□□□ -1.71
MCF2-203ENST00000370576 TRIM42Q8IWZ5 723 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 CMTR2Q8IYT2 770 aaKnown RBP4.39□□□□□ -1.71
MCF2-203ENST00000370576 CHST13Q8NET6 341 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 IPMKQ8NFU5 416 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 GSDMBQ8TAX9 411 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 DDX54Q8TDD1 881 aaKnown RBP4.39□□□□□ -1.71
MCF2-203ENST00000370576 CREB3L4Q8TEY5 395 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 BHMTQ93088 406 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 GTF3C6Q969F1 213 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 NCAPGQ9BPX3 1015 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 TMEM134Q9H6X4 195 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 KCTD5Q9NXV2 234 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 MKL2Q9ULH7 1088 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 DMTF1Q9Y222 760 aa4.39□□□□□ -1.71
MCF2-203ENST00000370576 MTF2Q9Y483 593 aaPredicted RBP4.39□□□□□ -1.71
MCF2-203ENST00000370576 KIAA1671Q9BY89 1806 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 ZNF536O15090 1300 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 XDHP47989 1333 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 FRMPD4Q14CM0 1322 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 A0A0G2JS52 829 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 AKR1B15C9JRZ8 316 aaPredicted RBP4.38□□□□□ -1.71
MCF2-203ENST00000370576 AHCYL1O43865 530 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 PGM3O95394 542 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 HPDP32754 393 aaPredicted RBP4.38□□□□□ -1.71
MCF2-203ENST00000370576 ZNF445P59923 1031 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 FOXK2Q01167 660 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 PPFIA1Q13136 1202 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 PPP2R5CQ13362 524 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 TRIM61Q5EBN2 209 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 FKBP1CQ5VVH2 108 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 LIN54Q6MZP7 749 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 RSRC2Q7L4I2 434 aaKnown RBP4.38□□□□□ -1.71
MCF2-203ENST00000370576 SDCCAG8Q86SQ7 713 aaPredicted RBP4.38□□□□□ -1.71
MCF2-203ENST00000370576 C3orf58Q8NDZ4 430 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 FLCNQ8NFG4 579 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 FAM193BQ96PV7 902 aaPredicted RBP4.38□□□□□ -1.71
MCF2-203ENST00000370576 SLC7A5P2Q9GIP4 190 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 ARGLU1Q9NWB6 273 aaPredicted RBP4.38□□□□□ -1.71
MCF2-203ENST00000370576 PSD3Q9NYI0 1048 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 FKBPLQ9UIM3 349 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 CCNL1Q9UK58 526 aaPredicted RBP4.38□□□□□ -1.71
MCF2-203ENST00000370576 TAF6LQ9Y6J9 622 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 SENP3-EIF4A1A0A087X0R7 540 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 BRINP1O60477 761 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 SLITRK5O94991 958 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 MAP3K6O95382 1288 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 HDCP19113 662 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 STAT1P42224 750 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 ATP2B3Q16720 1220 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 NAA16Q6N069 864 aaPredicted RBP4.38□□□□□ -1.71
MCF2-203ENST00000370576 ZSCAN25Q6NSZ9 544 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 ARHGEF18Q6ZSZ5 1173 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 ADGRA1Q86SQ6 560 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 NUTM1Q86Y26 1132 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 TRIM22Q8IYM9 498 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 SPATA5Q8NB90 893 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 DAGLBQ8NCG7 672 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 PNMA1Q8ND90 353 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 FAM89AQ96GI7 184 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 FAM227BQ96M60 508 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 SPON2Q9BUD6 331 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 CRB3Q9BUF7 120 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 MENTQ9BUN1 341 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 DIAPH3Q9NSV4 1193 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 CHMP5Q9NZZ3 219 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 DENND2AQ9ULE3 1009 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 GPSM3Q9Y4H4 160 aa4.38□□□□□ -1.71
MCF2-203ENST00000370576 GOLGA6L6A8MZA4 724 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 SH2B2O14492 632 aaPredicted RBP4.37□□□□□ -1.71
MCF2-203ENST00000370576 KPNA6O60684 536 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 PLA2G6O60733 806 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 ARFIP1P53367 373 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 HMGN5P82970 282 aaKnown RBP4.37□□□□□ -1.71
MCF2-203ENST00000370576 ZNF252P-AS1Q0IIN9 211 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 BIRC3Q13489 604 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 STAT4Q14765 748 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 NPY5RQ15761 445 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 ADCK5Q3MIX3 580 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 DPY19L2Q6NUT2 758 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 PRPF40BQ6NWY9 871 aaKnown RBP4.37□□□□□ -1.71
MCF2-203ENST00000370576 PI16Q6UXB8 463 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 IL17RDQ8NFM7 739 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 SPDYE1Q8NFV5 336 aaPredicted RBP4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms