RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 F5H6K3 240 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 PPEF1O14829 653 aaPredicted RBP13.2□□□□□ -0.3
CLIP3-201ENST00000360535 MSH4O15457 936 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 KLRC3Q07444 240 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 ZNF844Q08AG5 666 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 ITGB3BPQ13352 177 aaPredicted RBP13.2□□□□□ -0.3
CLIP3-201ENST00000360535 EPHA7Q15375 998 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 FRMD5Q7Z6J6 570 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 ELMO3Q96BJ8 720 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 SELENOSQ9BQE4 189 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 UTP11Q9Y3A2 253 aaKnown RBP13.2□□□□□ -0.3
CLIP3-201ENST00000360535 ASTN1O14525 1302 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 IGSF9BQ9UPX0 1349 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 PHF20L1A8MW92 1017 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 HMGB1P1B2RPK0 211 aaPredicted RBP13.2□□□□□ -0.3
CLIP3-201ENST00000360535 BBOX1O75936 387 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 GYS1P13807 737 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 PLTPP55058 493 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 PPP1R18Q6NYC8 613 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 SYT2Q8N9I0 419 aaPredicted RBP13.2□□□□□ -0.3
CLIP3-201ENST00000360535 CCDC26Q8TAB7 109 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 CTNNBL1Q8WYA6 563 aaPredicted RBP13.2□□□□□ -0.3
CLIP3-201ENST00000360535 AMNQ9BXJ7 453 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 DNAJC18Q9H819 358 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 ZBTB21Q9ULJ3 1066 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 SNX24Q9Y343 169 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 MAST2Q6P0Q8 1798 aa13.19□□□□□ -0.3
CLIP3-201ENST00000360535 TNFAIP3P21580 790 aa13.19□□□□□ -0.3
CLIP3-201ENST00000360535 HSPA9P38646 679 aaKnown RBP13.19□□□□□ -0.3
CLIP3-201ENST00000360535 SLCO1A2P46721 670 aa13.19□□□□□ -0.3
CLIP3-201ENST00000360535 PALB2Q86YC2 1186 aa13.19□□□□□ -0.3
CLIP3-201ENST00000360535 LRRC57Q8N9N7 239 aa13.19□□□□□ -0.3
CLIP3-201ENST00000360535 SCFD2Q8WU76 684 aa13.19□□□□□ -0.3
CLIP3-201ENST00000360535 DYDC2Q96IM9 177 aa13.19□□□□□ -0.3
CLIP3-201ENST00000360535 CNOT8Q9UFF9 292 aaKnown RBP13.19□□□□□ -0.3
CLIP3-201ENST00000360535 CDK5RAP2Q96SN8 1893 aa13.19□□□□□ -0.3
CLIP3-201ENST00000360535 RPA1P27694 616 aa13.19□□□□□ -0.3
CLIP3-201ENST00000360535 QPCTQ16769 361 aa13.19□□□□□ -0.3
CLIP3-201ENST00000360535 PPP4R3CPQ6ZMV5 832 aa13.19□□□□□ -0.3
CLIP3-201ENST00000360535 CPLX4Q7Z7G2 160 aa13.19□□□□□ -0.3
CLIP3-201ENST00000360535 LNX1Q8TBB1 728 aaPredicted RBP13.19□□□□□ -0.3
CLIP3-201ENST00000360535 LMBR1Q8WVP7 490 aa13.19□□□□□ -0.3
CLIP3-201ENST00000360535 HOOK2Q96ED9 719 aa13.19□□□□□ -0.3
CLIP3-201ENST00000360535 TYW1Q9NV66 732 aaKnown RBP13.19□□□□□ -0.3
CLIP3-201ENST00000360535 SWAP70Q9UH65 585 aa13.19□□□□□ -0.3
CLIP3-201ENST00000360535 ECHS1P30084 290 aa13.18□□□□□ -0.3
CLIP3-201ENST00000360535 MICALCLQ6ZW33 695 aa13.18□□□□□ -0.3
CLIP3-201ENST00000360535 CCDC25Q86WR0 208 aa13.18□□□□□ -0.3
CLIP3-201ENST00000360535 ETNPPLQ8TBG4 499 aa13.18□□□□□ -0.3
CLIP3-201ENST00000360535 ARHGEF26Q96DR7 871 aa13.18□□□□□ -0.3
CLIP3-201ENST00000360535 CABS1Q96KC9 395 aa13.18□□□□□ -0.3
CLIP3-201ENST00000360535 BZW2Q9Y6E2 419 aaKnown RBP13.18□□□□□ -0.3
CLIP3-201ENST00000360535 PDXKO00764 312 aa13.18□□□□□ -0.3
CLIP3-201ENST00000360535 PPP1R12BO60237 982 aaPredicted RBP13.18□□□□□ -0.3
CLIP3-201ENST00000360535 CBWD6Q4V339 395 aa13.18□□□□□ -0.3
CLIP3-201ENST00000360535 CBWD3Q5JTY5 395 aa13.18□□□□□ -0.3
CLIP3-201ENST00000360535 CBWD5Q5RIA9 395 aa13.18□□□□□ -0.3
CLIP3-201ENST00000360535 HYIQ5T013 277 aa13.18□□□□□ -0.3
CLIP3-201ENST00000360535 NT5DC3Q86UY8 548 aa13.18□□□□□ -0.3
CLIP3-201ENST00000360535 ZNF622Q969S3 477 aaKnown RBP eCLIP13.18□□□□□ -0.3
CLIP3-201ENST00000360535 CCDC114Q96M63 670 aa13.18□□□□□ -0.3
CLIP3-201ENST00000360535 THAP2Q9H0W7 228 aa13.18□□□□□ -0.3
CLIP3-201ENST00000360535 SBF2Q86WG5 1849 aa13.18□□□□□ -0.3
CLIP3-201ENST00000360535 COL5A3P25940 1745 aaPredicted RBP13.18□□□□□ -0.3
CLIP3-201ENST00000360535 TISP43B9A030 160 aa13.18□□□□□ -0.3
CLIP3-201ENST00000360535 UBAP1LF5GYI3 381 aa13.18□□□□□ -0.3
CLIP3-201ENST00000360535 EXOC3O60645 756 aa13.18□□□□□ -0.3
CLIP3-201ENST00000360535 CRKP46108 304 aa13.18□□□□□ -0.3
CLIP3-201ENST00000360535 MARSP56192 900 aaKnown RBP13.18□□□□□ -0.3
CLIP3-201ENST00000360535 SPIRE1Q08AE8 756 aa13.18□□□□□ -0.3
CLIP3-201ENST00000360535 CUL1Q13616 776 aa13.18□□□□□ -0.3
CLIP3-201ENST00000360535 APOBEC3HQ6NTF7 200 aaKnown RBP13.18□□□□□ -0.3
CLIP3-201ENST00000360535 RINT1Q6NUQ1 792 aa13.18□□□□□ -0.3
CLIP3-201ENST00000360535 CCDC121Q6ZUS5 278 aa13.18□□□□□ -0.3
CLIP3-201ENST00000360535 CYFIP2Q96F07 1278 aa13.18□□□□□ -0.3
CLIP3-201ENST00000360535 SIX2Q9NPC8 291 aa13.18□□□□□ -0.3
CLIP3-201ENST00000360535 PLCB1Q9NQ66 1216 aa13.18□□□□□ -0.3
CLIP3-201ENST00000360535 USP21Q9UK80 565 aa13.18□□□□□ -0.3
CLIP3-201ENST00000360535 TRAF3IP3Q9Y228 551 aa13.18□□□□□ -0.3
CLIP3-201ENST00000360535 PTPN22Q9Y2R2 807 aa13.18□□□□□ -0.3
CLIP3-201ENST00000360535 TGFB1I1O43294 461 aa13.17□□□□□ -0.3
CLIP3-201ENST00000360535 ATMINO43313 823 aaPredicted RBP13.17□□□□□ -0.3
CLIP3-201ENST00000360535 NOVP48745 357 aa13.17□□□□□ -0.3
CLIP3-201ENST00000360535 DDR1Q08345 913 aa13.17□□□□□ -0.3
CLIP3-201ENST00000360535 ODR4Q5SWX8 454 aa13.17□□□□□ -0.3
CLIP3-201ENST00000360535 KCNV1Q6PIU1 500 aa13.17□□□□□ -0.3
CLIP3-201ENST00000360535 FAM178BQ8IXR5 827 aa13.17□□□□□ -0.3
CLIP3-201ENST00000360535 ARFGAP2Q8N6H7 521 aa13.17□□□□□ -0.3
CLIP3-201ENST00000360535 BANK1Q8NDB2 785 aa13.17□□□□□ -0.3
CLIP3-201ENST00000360535 ACTRT1Q8TDG2 376 aa13.17□□□□□ -0.3
CLIP3-201ENST00000360535 ERVK-5Q9HDB9 667 aa13.17□□□□□ -0.3
CLIP3-201ENST00000360535 ACP6Q9NPH0 428 aa13.17□□□□□ -0.3
CLIP3-201ENST00000360535 CTTNBP2NLQ9P2B4 639 aa13.17□□□□□ -0.3
CLIP3-201ENST00000360535 PNMA2Q9UL42 364 aa13.17□□□□□ -0.3
CLIP3-201ENST00000360535 PITPNM2Q9BZ72 1349 aa13.17□□□□□ -0.3
CLIP3-201ENST00000360535 GMNCA6NCL1 334 aa13.17□□□□□ -0.3
CLIP3-201ENST00000360535 NDUFB10O96000 172 aa13.17□□□□□ -0.3
CLIP3-201ENST00000360535 GH2P01242 217 aa13.17□□□□□ -0.3
CLIP3-201ENST00000360535 JPH2Q9BR39 696 aaPredicted RBP13.17□□□□□ -0.3
CLIP3-201ENST00000360535 METTL14Q9HCE5 456 aaKnown RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms