RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 CABP7Q86V35 215 aa13.44□□□□□ -0.26
COL6A3-203ENST00000353578 SASH1O94885 1247 aa13.44□□□□□ -0.26
COL6A3-203ENST00000353578 EIF2B2P49770 351 aaKnown RBP13.44□□□□□ -0.26
COL6A3-203ENST00000353578 DPCR1Q3MIW9 517 aa13.44□□□□□ -0.26
COL6A3-203ENST00000353578 NANOGNBQ7Z5D8 188 aa13.44□□□□□ -0.26
COL6A3-203ENST00000353578 SPDYE1Q8NFV5 336 aaPredicted RBP13.44□□□□□ -0.26
COL6A3-203ENST00000353578 P2RX5Q93086 422 aa13.44□□□□□ -0.26
COL6A3-203ENST00000353578 CEP72Q9P209 647 aa13.44□□□□□ -0.26
COL6A3-203ENST00000353578 CARD8Q9Y2G2 431 aa13.44□□□□□ -0.26
COL6A3-203ENST00000353578 PTPN22Q9Y2R2 807 aa13.44□□□□□ -0.26
COL6A3-203ENST00000353578 C15orf41Q9Y2V0 281 aa13.44□□□□□ -0.26
COL6A3-203ENST00000353578 EMC3Q9P0I2 261 aa13.44□□□□□ -0.26
COL6A3-203ENST00000353578 EVPLLA8MZ36 301 aa13.44□□□□□ -0.26
COL6A3-203ENST00000353578 FGGP02679 453 aa13.44□□□□□ -0.26
COL6A3-203ENST00000353578 RAPH1Q70E73 1250 aa13.44□□□□□ -0.26
COL6A3-203ENST00000353578 ITFG2Q969R8 447 aa13.44□□□□□ -0.26
COL6A3-203ENST00000353578 KLHL20Q9Y2M5 609 aa13.44□□□□□ -0.26
COL6A3-203ENST00000353578 FLT4P35916 1363 aa13.43□□□□□ -0.26
COL6A3-203ENST00000353578 RFX7Q2KHR2 1363 aa13.43□□□□□ -0.26
COL6A3-203ENST00000353578 RBBP8NLQ8NC74 664 aaPredicted RBP13.43□□□□□ -0.26
COL6A3-203ENST00000353578 NLRC4Q9NPP4 1024 aa13.43□□□□□ -0.26
COL6A3-203ENST00000353578 COPG2Q9UBF2 871 aa13.43□□□□□ -0.26
COL6A3-203ENST00000353578 SLC4A7Q9Y6M7 1214 aa13.43□□□□□ -0.26
COL6A3-203ENST00000353578 TRIM24O15164 1050 aa13.43□□□□□ -0.26
COL6A3-203ENST00000353578 MTTPP55157 894 aa13.43□□□□□ -0.26
COL6A3-203ENST00000353578 KBTBD12Q3ZCT8 623 aa13.43□□□□□ -0.26
COL6A3-203ENST00000353578 PRR23BQ6ZRT6 265 aa13.43□□□□□ -0.26
COL6A3-203ENST00000353578 KLHL4Q9C0H6 718 aa13.43□□□□□ -0.26
COL6A3-203ENST00000353578 TNKSO95271 1327 aa13.43□□□□□ -0.26
COL6A3-203ENST00000353578 DLGAP3O95886 979 aa13.43□□□□□ -0.26
COL6A3-203ENST00000353578 IL12RB1P42701 662 aa13.43□□□□□ -0.26
COL6A3-203ENST00000353578 IRGCQ6NXR0 463 aa13.43□□□□□ -0.26
COL6A3-203ENST00000353578 RTL3Q8N8U3 475 aaKnown RBP13.43□□□□□ -0.26
COL6A3-203ENST00000353578 FHDC1Q9C0D6 1143 aaPredicted RBP13.43□□□□□ -0.26
COL6A3-203ENST00000353578 L2HGDHQ9H9P8 463 aa13.43□□□□□ -0.26
COL6A3-203ENST00000353578 AIPL1Q9NZN9 384 aa13.43□□□□□ -0.26
COL6A3-203ENST00000353578 RGS20O76081 388 aa13.43□□□□□ -0.26
COL6A3-203ENST00000353578 ACSL3O95573 720 aa13.43□□□□□ -0.26
COL6A3-203ENST00000353578 PCYOX1LQ8NBM8 494 aa13.43□□□□□ -0.26
COL6A3-203ENST00000353578 KIF20BQ96Q89 1820 aa13.43□□□□□ -0.26
COL6A3-203ENST00000353578 ENC1O14682 589 aa13.43□□□□□ -0.26
COL6A3-203ENST00000353578 AFPP02771 609 aaKnown RBP13.43□□□□□ -0.26
COL6A3-203ENST00000353578 ASXL2Q76L83 1435 aa13.43□□□□□ -0.26
COL6A3-203ENST00000353578 VPS50Q96JG6 964 aa13.43□□□□□ -0.26
COL6A3-203ENST00000353578 ANP32DO95626 131 aa13.43□□□□□ -0.26
COL6A3-203ENST00000353578 PSMA3P25788 255 aa13.43□□□□□ -0.26
COL6A3-203ENST00000353578 WASHC2DQ5SRD0 308 aa13.43□□□□□ -0.26
COL6A3-203ENST00000353578 ARHGEF1Q92888 912 aaKnown RBP13.43□□□□□ -0.26
COL6A3-203ENST00000353578 NUDT16Q96DE0 195 aaKnown RBP13.43□□□□□ -0.26
COL6A3-203ENST00000353578 FRMD8Q9BZ67 464 aaPredicted RBP13.43□□□□□ -0.26
COL6A3-203ENST00000353578 ZNF233A6NK53 670 aa13.43□□□□□ -0.26
COL6A3-203ENST00000353578 ZFP1Q6P2D0 407 aa13.43□□□□□ -0.26
COL6A3-203ENST00000353578 USP28Q96RU2 1077 aa13.43□□□□□ -0.26
COL6A3-203ENST00000353578 A1CFQ9NQ94 594 aaKnown RBP13.43□□□□□ -0.26
COL6A3-203ENST00000353578 PRG3Q9Y2Y8 225 aaPredicted RBP13.43□□□□□ -0.26
COL6A3-203ENST00000353578 CDY2AQ9Y6F7 541 aa13.43□□□□□ -0.26
COL6A3-203ENST00000353578 CDY1Q9Y6F8 540 aa13.43□□□□□ -0.26
COL6A3-203ENST00000353578 POGZQ7Z3K3 1410 aa13.43□□□□□ -0.26
COL6A3-203ENST00000353578 KRT26Q7Z3Y9 468 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 STKLD1Q8NE28 680 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 SLC26A7Q8TE54 656 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 NR1H4Q96RI1 486 aaPredicted RBP13.42□□□□□ -0.26
COL6A3-203ENST00000353578 ZBED2Q9BTP6 218 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 SCN3BQ9NY72 215 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 ITIH6Q6UXX5 1313 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 WDR19Q8NEZ3 1342 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 MAPK4P31152 587 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 RCAN1P53805 252 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 STAP2Q9UGK3 403 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 ZHX2Q9Y6X8 837 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 LGALS16A8MUM7 142 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 ATP5JP18859 108 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 CCDC153Q494R4 210 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 DEPDC1BQ8WUY9 529 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 POMGNT1Q8WZA1 660 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 PPP2R3CQ969Q6 453 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 SKA1Q96BD8 255 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 SAP30BPQ9UHR5 308 aaKnown RBP13.42□□□□□ -0.26
COL6A3-203ENST00000353578 P4HA2O15460 535 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 MED7O43513 233 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 OR52Z1P0C646 297 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 MYBL1P10243 752 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 CLK1P49759 484 aaKnown RBP13.42□□□□□ -0.26
COL6A3-203ENST00000353578 MYCT1Q8N699 235 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 WNT8AQ9H1J5 351 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 CHMP2BQ9UQN3 213 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 TINF2Q9BSI4 451 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 SPINK5Q9NQ38 1064 aaPredicted RBP13.42□□□□□ -0.26
COL6A3-203ENST00000353578 FBXO28Q9NVF7 368 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 CYP4F22Q6NT55 531 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 MAGEC3Q8TD91 643 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 SMYD3Q9H7B4 428 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 GPBP1L1Q9HC44 474 aaPredicted RBP13.42□□□□□ -0.26
COL6A3-203ENST00000353578 SNTNA6NMZ2 147 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 NBPF26B4DH59 902 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 NBPF15Q8N660 670 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 GCNT4Q9P109 453 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 CROCC2H7BZ55 1655 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 TTC37Q6PGP7 1564 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 ATP10DQ9P241 1426 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms