RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 KRT73Q86Y46 540 aa13.68□□□□□ -0.22
USP47-202ENST00000339865 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.68□□□□□ -0.22
USP47-202ENST00000339865 GGCXP38435 758 aa13.68□□□□□ -0.22
USP47-202ENST00000339865 ODR4Q5SWX8 454 aa13.68□□□□□ -0.22
USP47-202ENST00000339865 SPRTNQ9H040 489 aaPredicted RBP13.68□□□□□ -0.22
USP47-202ENST00000339865 NHEJ1Q9H9Q4 299 aaPredicted RBP13.68□□□□□ -0.22
USP47-202ENST00000339865 UBE2TQ9NPD8 197 aaPredicted RBP13.68□□□□□ -0.22
USP47-202ENST00000339865 COPRSQ9NQ92 184 aa13.68□□□□□ -0.22
USP47-202ENST00000339865 AKAP10O43572 662 aa13.68□□□□□ -0.22
USP47-202ENST00000339865 CHMP1BQ7LBR1 199 aa13.68□□□□□ -0.22
USP47-202ENST00000339865 H2AFY2Q9P0M6 372 aaPredicted RBP13.68□□□□□ -0.22
USP47-202ENST00000339865 ARPP21Q9UBL0 812 aaPredicted RBP13.68□□□□□ -0.22
USP47-202ENST00000339865 PCDHGB4Q9UN71 923 aa13.68□□□□□ -0.22
USP47-202ENST00000339865 MED7O43513 233 aa13.68□□□□□ -0.22
USP47-202ENST00000339865 CENPAP49450 140 aa13.68□□□□□ -0.22
USP47-202ENST00000339865 HIC1Q14526 733 aa13.68□□□□□ -0.22
USP47-202ENST00000339865 ANKRD49Q8WVL7 239 aa13.68□□□□□ -0.22
USP47-202ENST00000339865 CYTH3O43739 400 aa13.67□□□□□ -0.22
USP47-202ENST00000339865 HAUS5O94927 633 aa13.67□□□□□ -0.22
USP47-202ENST00000339865 PGM1P36871 562 aa13.67□□□□□ -0.22
USP47-202ENST00000339865 ATXN3P54252 364 aaPredicted RBP13.67□□□□□ -0.22
USP47-202ENST00000339865 KDSRQ06136 332 aa13.67□□□□□ -0.22
USP47-202ENST00000339865 FBXO38Q6PIJ6 1188 aa13.67□□□□□ -0.22
USP47-202ENST00000339865 KRT28Q7Z3Y7 464 aa13.67□□□□□ -0.22
USP47-202ENST00000339865 NFATC2IPQ8NCF5 419 aa13.67□□□□□ -0.22
USP47-202ENST00000339865 TMC2Q8TDI7 906 aa13.67□□□□□ -0.22
USP47-202ENST00000339865 SYMPKQ92797 1274 aaKnown RBP13.67□□□□□ -0.22
USP47-202ENST00000339865 EME1Q96AY2 570 aa13.67□□□□□ -0.22
USP47-202ENST00000339865 RERGLQ9H628 205 aa13.67□□□□□ -0.22
USP47-202ENST00000339865 FAM32AQ9Y421 112 aaKnown RBP13.67□□□□□ -0.22
USP47-202ENST00000339865 NDUFB9Q9Y6M9 179 aa13.67□□□□□ -0.22
USP47-202ENST00000339865 TRIM13O60858 407 aa13.67□□□□□ -0.22
USP47-202ENST00000339865 COPB2P35606 906 aa13.67□□□□□ -0.22
USP47-202ENST00000339865 NXF1Q9UBU9 619 aaKnown RBP13.67□□□□□ -0.22
USP47-202ENST00000339865 SUPT3HB4E1H0 165 aa13.67□□□□□ -0.22
USP47-202ENST00000339865 DNALI1O14645 258 aaPredicted RBP13.67□□□□□ -0.22
USP47-202ENST00000339865 S100A9P06702 114 aaKnown RBP13.67□□□□□ -0.22
USP47-202ENST00000339865 ELF1P32519 619 aa13.67□□□□□ -0.22
USP47-202ENST00000339865 TFAMQ00059 246 aaKnown RBP13.67□□□□□ -0.22
USP47-202ENST00000339865 ME3Q16798 604 aa13.67□□□□□ -0.22
USP47-202ENST00000339865 AKIRIN2Q53H80 203 aa13.67□□□□□ -0.22
USP47-202ENST00000339865 NFRKBQ6P4R8 1299 aa13.67□□□□□ -0.22
USP47-202ENST00000339865 PI4K2BQ8TCG2 481 aa13.67□□□□□ -0.22
USP47-202ENST00000339865 TGFBRAP1Q8WUH2 860 aa13.67□□□□□ -0.22
USP47-202ENST00000339865 CASP10Q92851 521 aa13.67□□□□□ -0.22
USP47-202ENST00000339865 PBXIP1Q96AQ6 731 aa13.67□□□□□ -0.22
USP47-202ENST00000339865 RBM17Q96I25 401 aaKnown RBP13.67□□□□□ -0.22
USP47-202ENST00000339865 SPTLC3Q9NUV7 552 aa13.67□□□□□ -0.22
USP47-202ENST00000339865 TRAPPC3LQ5T215 181 aa13.67□□□□□ -0.22
USP47-202ENST00000339865 KIAA1024Q9UPX6 916 aa13.67□□□□□ -0.22
USP47-202ENST00000339865 MYO1GB0I1T2 1018 aa13.67□□□□□ -0.22
USP47-202ENST00000339865 PIK3R2O00459 728 aa13.67□□□□□ -0.22
USP47-202ENST00000339865 PODXLO00592 558 aa13.67□□□□□ -0.22
USP47-202ENST00000339865 ENO1P06733 434 aaKnown RBP13.67□□□□□ -0.22
USP47-202ENST00000339865 SRLQ86TD4 932 aa13.67□□□□□ -0.22
USP47-202ENST00000339865 TMA16Q96EY4 203 aaKnown RBP13.67□□□□□ -0.22
USP47-202ENST00000339865 PCDHA13Q9Y5I0 950 aa13.67□□□□□ -0.22
USP47-202ENST00000339865 F5H423 210 aaPredicted RBP13.67□□□□□ -0.22
USP47-202ENST00000339865 AFF4Q9UHB7 1163 aaKnown RBP13.67□□□□□ -0.22
USP47-202ENST00000339865 HEY1Q9Y5J3 304 aa13.67□□□□□ -0.22
USP47-202ENST00000339865 UFL1O94874 794 aa13.67□□□□□ -0.22
USP47-202ENST00000339865 PSMC2P35998 433 aaKnown RBP13.67□□□□□ -0.22
USP47-202ENST00000339865 PSMC6P62333 389 aa13.67□□□□□ -0.22
USP47-202ENST00000339865 SMAD1Q15797 465 aaKnown RBP13.67□□□□□ -0.22
USP47-202ENST00000339865 SPDYAQ5MJ70 313 aa13.67□□□□□ -0.22
USP47-202ENST00000339865 CCDC81Q6ZN84 652 aa13.67□□□□□ -0.22
USP47-202ENST00000339865 BTKQ06187 659 aa13.66□□□□□ -0.22
USP47-202ENST00000339865 PPP2R5BQ15173 497 aa13.66□□□□□ -0.22
USP47-202ENST00000339865 CCDC60Q8IWA6 550 aaPredicted RBP13.66□□□□□ -0.22
USP47-202ENST00000339865 BLIDQ8IZY5 108 aa13.66□□□□□ -0.22
USP47-202ENST00000339865 RAD18Q9NS91 495 aa13.66□□□□□ -0.22
USP47-202ENST00000339865 CLCA2Q9UQC9 943 aa13.66□□□□□ -0.22
USP47-202ENST00000339865 OR52Z1P0C646 297 aa13.66□□□□□ -0.22
USP47-202ENST00000339865 SOX11P35716 441 aa13.66□□□□□ -0.22
USP47-202ENST00000339865 PARVBQ9HBI1 364 aa13.66□□□□□ -0.22
USP47-202ENST00000339865 NEUROD4Q9HD90 331 aa13.66□□□□□ -0.22
USP47-202ENST00000339865 EPRSP07814 1512 aaKnown RBP13.66□□□□□ -0.22
USP47-202ENST00000339865 H0YCG3 227 aa13.66□□□□□ -0.22
USP47-202ENST00000339865 CDC25BP30305 580 aa13.66□□□□□ -0.22
USP47-202ENST00000339865 CDC37Q16543 378 aaPredicted RBP13.66□□□□□ -0.22
USP47-202ENST00000339865 METTL23Q86XA0 190 aa13.66□□□□□ -0.22
USP47-202ENST00000339865 KLHL8Q9P2G9 620 aaPredicted RBP13.66□□□□□ -0.22
USP47-202ENST00000339865 TTC7AQ9ULT0 858 aaPredicted RBP13.66□□□□□ -0.22
USP47-202ENST00000339865 C16orf96A6NNT2 1141 aa13.66□□□□□ -0.22
USP47-202ENST00000339865 XPO1O14980 1071 aaKnown RBP13.66□□□□□ -0.22
USP47-202ENST00000339865 ATP6V1B1P15313 513 aa13.66□□□□□ -0.22
USP47-202ENST00000339865 HIBADHP31937 336 aaKnown RBP13.66□□□□□ -0.22
USP47-202ENST00000339865 EGFL8Q99944 293 aa13.66□□□□□ -0.22
USP47-202ENST00000339865 BLOC1S6Q9UL45 172 aa13.66□□□□□ -0.22
USP47-202ENST00000339865 DAPK1P53355 1430 aa13.66□□□□□ -0.22
USP47-202ENST00000339865 CLIC2O15247 247 aa13.66□□□□□ -0.22
USP47-202ENST00000339865 ATP12AP54707 1039 aa13.66□□□□□ -0.22
USP47-202ENST00000339865 ALDH18A1P54886 795 aaKnown RBP13.66□□□□□ -0.22
USP47-202ENST00000339865 TFAP4Q01664 338 aa13.66□□□□□ -0.22
USP47-202ENST00000339865 LAMC2Q13753 1193 aa13.66□□□□□ -0.22
USP47-202ENST00000339865 IFT43Q96FT9 208 aa13.66□□□□□ -0.22
USP47-202ENST00000339865 TROQ12816 1431 aaPredicted RBP13.66□□□□□ -0.22
USP47-202ENST00000339865 CAPZA2P47755 286 aa13.66□□□□□ -0.22
USP47-202ENST00000339865 C11orf88Q6PI97 169 aa13.66□□□□□ -0.22
USP47-202ENST00000339865 RTL3Q8N8U3 475 aaKnown RBP13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms