RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 NCAPD2Q15021 1401 aa17.27■□□□□ 0.35
NPHP3-201ENST00000337331 HNRNPDLO14979 420 aaKnown RBP17.26■□□□□ 0.35
NPHP3-201ENST00000337331 GDF11O95390 407 aa17.26■□□□□ 0.35
NPHP3-201ENST00000337331 GLI1P08151 1106 aa17.26■□□□□ 0.35
NPHP3-201ENST00000337331 PLA2G4BP0C869 781 aa17.26■□□□□ 0.35
NPHP3-201ENST00000337331 CDK8P49336 464 aa17.26■□□□□ 0.35
NPHP3-201ENST00000337331 WLSQ5T9L3 541 aa17.26■□□□□ 0.35
NPHP3-201ENST00000337331 CSRNP1Q96S65 589 aa17.26■□□□□ 0.35
NPHP3-201ENST00000337331 PITPNM3Q9BZ71 974 aa17.26■□□□□ 0.35
NPHP3-201ENST00000337331 SRP68Q9UHB9 627 aaKnown RBP17.26■□□□□ 0.35
NPHP3-201ENST00000337331 HSD17B3P37058 310 aa17.26■□□□□ 0.35
NPHP3-201ENST00000337331 RFC5P40937 340 aa17.26■□□□□ 0.35
NPHP3-201ENST00000337331 GFPT1Q06210 699 aaPredicted RBP17.26■□□□□ 0.35
NPHP3-201ENST00000337331 TMC4Q7Z404 712 aa17.26■□□□□ 0.35
NPHP3-201ENST00000337331 ST13P4Q8IZP2 240 aaPredicted RBP17.26■□□□□ 0.35
NPHP3-201ENST00000337331 GRK7Q8WTQ7 553 aa17.26■□□□□ 0.35
NPHP3-201ENST00000337331 LRRIQ4A6NIV6 560 aa17.26■□□□□ 0.35
NPHP3-201ENST00000337331 NMT2O60551 498 aa17.26■□□□□ 0.35
NPHP3-201ENST00000337331 APBA3O96018 575 aa17.26■□□□□ 0.35
NPHP3-201ENST00000337331 TROVE2P10155 538 aaKnown RBP eCLIP17.26■□□□□ 0.35
NPHP3-201ENST00000337331 PRCPP42785 496 aa17.26■□□□□ 0.35
NPHP3-201ENST00000337331 GRIN1Q05586 938 aa17.26■□□□□ 0.35
NPHP3-201ENST00000337331 KAZNQ674X7 775 aa17.26■□□□□ 0.35
NPHP3-201ENST00000337331 ALKBH5Q6P6C2 394 aaKnown RBP17.26■□□□□ 0.35
NPHP3-201ENST00000337331 RILPQ96NA2 401 aa17.26■□□□□ 0.35
NPHP3-201ENST00000337331 NT5C1BQ96P26 610 aa17.26■□□□□ 0.35
NPHP3-201ENST00000337331 GCNT4Q9P109 453 aa17.26■□□□□ 0.35
NPHP3-201ENST00000337331 NBPF26B4DH59 902 aa17.26■□□□□ 0.35
NPHP3-201ENST00000337331 STK10O94804 968 aaKnown RBP17.26■□□□□ 0.35
NPHP3-201ENST00000337331 SERPINB2P05120 415 aa17.26■□□□□ 0.35
NPHP3-201ENST00000337331 SNX16P57768 344 aa17.26■□□□□ 0.35
NPHP3-201ENST00000337331 PTK2Q05397 1052 aa17.26■□□□□ 0.35
NPHP3-201ENST00000337331 LRRC63Q05C16 580 aa17.26■□□□□ 0.35
NPHP3-201ENST00000337331 RFX8Q6ZV50 586 aa17.26■□□□□ 0.35
NPHP3-201ENST00000337331 ERICH1Q86X53 443 aa17.26■□□□□ 0.35
NPHP3-201ENST00000337331 NBPF15Q8N660 670 aa17.26■□□□□ 0.35
NPHP3-201ENST00000337331 IVNS1ABPQ9Y6Y0 642 aa17.26■□□□□ 0.35
NPHP3-201ENST00000337331 NVLO15381 856 aaKnown RBP17.25■□□□□ 0.35
NPHP3-201ENST00000337331 ATF2P15336 505 aa17.25■□□□□ 0.35
NPHP3-201ENST00000337331 ABCD1P33897 745 aa17.25■□□□□ 0.35
NPHP3-201ENST00000337331 RFC1P35251 1148 aaPredicted RBP17.25■□□□□ 0.35
NPHP3-201ENST00000337331 DMP1Q13316 513 aaPredicted RBP17.25■□□□□ 0.35
NPHP3-201ENST00000337331 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.25■□□□□ 0.35
NPHP3-201ENST00000337331 KCNB2Q92953 911 aa17.25■□□□□ 0.35
NPHP3-201ENST00000337331 FGFR1OP2Q9NVK5 253 aa17.25■□□□□ 0.35
NPHP3-201ENST00000337331 USP15Q9Y4E8 981 aaPredicted RBP17.25■□□□□ 0.35
NPHP3-201ENST00000337331 CLRN2A0PK11 232 aa17.25■□□□□ 0.35
NPHP3-201ENST00000337331 ZNF18P17022 549 aa17.25■□□□□ 0.35
NPHP3-201ENST00000337331 FNTAP49354 379 aa17.25■□□□□ 0.35
NPHP3-201ENST00000337331 ALDH5A1P51649 535 aaPredicted RBP17.25■□□□□ 0.35
NPHP3-201ENST00000337331 EXOSC10Q01780 885 aaKnown RBP17.25■□□□□ 0.35
NPHP3-201ENST00000337331 SCYL2Q6P3W7 929 aa17.25■□□□□ 0.35
NPHP3-201ENST00000337331 TRIM42Q8IWZ5 723 aa17.25■□□□□ 0.35
NPHP3-201ENST00000337331 GPR101Q96P66 508 aaPredicted RBP17.25■□□□□ 0.35
NPHP3-201ENST00000337331 PCIF1Q9H4Z3 704 aa17.25■□□□□ 0.35
NPHP3-201ENST00000337331 AMACRQ9UHK6 382 aa17.25■□□□□ 0.35
NPHP3-201ENST00000337331 SNX24Q9Y343 169 aa17.25■□□□□ 0.35
NPHP3-201ENST00000337331 PPRC1Q5VV67 1664 aaKnown RBP17.25■□□□□ 0.35
NPHP3-201ENST00000337331 ZNF233A6NK53 670 aa17.25■□□□□ 0.35
NPHP3-201ENST00000337331 GSG1L2A8MUP6 293 aa17.25■□□□□ 0.35
NPHP3-201ENST00000337331 RAD51CO43502 376 aa17.25■□□□□ 0.35
NPHP3-201ENST00000337331 BBOX1O75936 387 aa17.25■□□□□ 0.35
NPHP3-201ENST00000337331 CDC37Q16543 378 aaPredicted RBP17.25■□□□□ 0.35
NPHP3-201ENST00000337331 C6orf118Q5T5N4 469 aa17.25■□□□□ 0.35
NPHP3-201ENST00000337331 MIS18BP1Q6P0N0 1132 aa17.25■□□□□ 0.35
NPHP3-201ENST00000337331 OPTNQ96CV9 577 aa17.25■□□□□ 0.35
NPHP3-201ENST00000337331 RUNDC3BQ96NL0 473 aa17.25■□□□□ 0.35
NPHP3-201ENST00000337331 ZNF577Q9BSK1 485 aa17.25■□□□□ 0.35
NPHP3-201ENST00000337331 TMBIM4Q9HC24 238 aa17.25■□□□□ 0.35
NPHP3-201ENST00000337331 WDR19Q8NEZ3 1342 aa17.25■□□□□ 0.35
NPHP3-201ENST00000337331 TPD52L2O43399 206 aaKnown RBP17.24■□□□□ 0.35
NPHP3-201ENST00000337331 SERPING1P05155 500 aa17.24■□□□□ 0.35
NPHP3-201ENST00000337331 ZCCHC18P0CG32 403 aa17.24■□□□□ 0.35
NPHP3-201ENST00000337331 ARHGAP18Q8N392 663 aa17.24■□□□□ 0.35
NPHP3-201ENST00000337331 ZNF653Q96CK0 615 aa17.24■□□□□ 0.35
NPHP3-201ENST00000337331 DBNDD1Q9H9R9 158 aa17.24■□□□□ 0.35
NPHP3-201ENST00000337331 TYW1Q9NV66 732 aaKnown RBP17.24■□□□□ 0.35
NPHP3-201ENST00000337331 CAPN11Q9UMQ6 739 aa17.24■□□□□ 0.35
NPHP3-201ENST00000337331 CAPN6Q9Y6Q1 641 aa17.24■□□□□ 0.35
NPHP3-201ENST00000337331 RFX7Q2KHR2 1363 aa17.24■□□□□ 0.35
NPHP3-201ENST00000337331 PFKFB3Q16875 520 aaPredicted RBP17.24■□□□□ 0.35
NPHP3-201ENST00000337331 SLC44A5Q8NCS7 719 aa17.24■□□□□ 0.35
NPHP3-201ENST00000337331 CASKIN2Q8WXE0 1202 aa17.24■□□□□ 0.35
NPHP3-201ENST00000337331 ZMAT2Q96NC0 199 aaKnown RBP17.24■□□□□ 0.35
NPHP3-201ENST00000337331 OSBPL7Q9BZF2 842 aa17.24■□□□□ 0.35
NPHP3-201ENST00000337331 BHMT2Q9H2M3 363 aa17.24■□□□□ 0.35
NPHP3-201ENST00000337331 ADGRL3Q9HAR2 1447 aa17.24■□□□□ 0.35
NPHP3-201ENST00000337331 TTLL3Q9Y4R7 772 aa17.24■□□□□ 0.35
NPHP3-201ENST00000337331 hCG_1984214I3L0E3 225 aa17.24■□□□□ 0.35
NPHP3-201ENST00000337331 ZNF189O75820 626 aaPredicted RBP17.24■□□□□ 0.35
NPHP3-201ENST00000337331 GAP43P17677 238 aa17.24■□□□□ 0.35
NPHP3-201ENST00000337331 COPS2P61201 443 aa17.24■□□□□ 0.35
NPHP3-201ENST00000337331 ZNF713Q8N859 430 aaPredicted RBP17.24■□□□□ 0.35
NPHP3-201ENST00000337331 ISCA1Q9BUE6 129 aa17.24■□□□□ 0.35
NPHP3-201ENST00000337331 BMP3P12645 472 aa17.24■□□□□ 0.35
NPHP3-201ENST00000337331 FOXO4P98177 505 aa17.24■□□□□ 0.35
NPHP3-201ENST00000337331 BFSP1Q12934 665 aa17.24■□□□□ 0.35
NPHP3-201ENST00000337331 CWF19L1Q69YN2 538 aaKnown RBP17.24■□□□□ 0.35
NPHP3-201ENST00000337331 SGMS1Q86VZ5 419 aa17.24■□□□□ 0.35
NPHP3-201ENST00000337331 MCF2L2Q86YR7 1114 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms