RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 MAPK8IP1Q9UQF2 711 aa16.5■□□□□ 0.23
CCDC88C-202ENST00000334448 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.49■□□□□ 0.23
CCDC88C-202ENST00000334448 TMEM150BA6NC51 233 aa16.49■□□□□ 0.23
CCDC88C-202ENST00000334448 LRRC10BA6NIK2 292 aa16.49■□□□□ 0.23
CCDC88C-202ENST00000334448 A6NJR5 290 aa16.49■□□□□ 0.23
CCDC88C-202ENST00000334448 MGAMO43451 1857 aa16.49■□□□□ 0.23
CCDC88C-202ENST00000334448 GAS2O43903 313 aaKnown RBP16.49■□□□□ 0.23
CCDC88C-202ENST00000334448 SORBS3O60504 671 aa16.49■□□□□ 0.23
CCDC88C-202ENST00000334448 STX17P56962 302 aa16.49■□□□□ 0.23
CCDC88C-202ENST00000334448 FANCCQ00597 558 aa16.49■□□□□ 0.23
CCDC88C-202ENST00000334448 TNFAIP2Q03169 654 aa16.49■□□□□ 0.23
CCDC88C-202ENST00000334448 KIF22Q14807 665 aa16.49■□□□□ 0.23
CCDC88C-202ENST00000334448 CCL14Q16627 93 aa16.49■□□□□ 0.23
CCDC88C-202ENST00000334448 NFIL3Q16649 462 aa16.49■□□□□ 0.23
CCDC88C-202ENST00000334448 EDRF1Q3B7T1 1238 aa16.49■□□□□ 0.23
CCDC88C-202ENST00000334448 APTXQ7Z2E3 356 aaKnown RBP16.49■□□□□ 0.23
CCDC88C-202ENST00000334448 ZNF720Q7Z2F6 126 aa16.49■□□□□ 0.23
CCDC88C-202ENST00000334448 EXOC8Q8IYI6 725 aa16.49■□□□□ 0.23
CCDC88C-202ENST00000334448 MYCT1Q8N699 235 aa16.49■□□□□ 0.23
CCDC88C-202ENST00000334448 TMEM174Q8WUU8 243 aa16.49■□□□□ 0.23
CCDC88C-202ENST00000334448 NTPCRQ9BSD7 190 aaKnown RBP16.49■□□□□ 0.23
CCDC88C-202ENST00000334448 ARHGAP39Q9C0H5 1083 aa16.49■□□□□ 0.23
CCDC88C-202ENST00000334448 DOCK5Q9H7D0 1870 aa16.49■□□□□ 0.23
CCDC88C-202ENST00000334448 SAMSN1Q9NSI8 373 aaKnown RBP16.49■□□□□ 0.23
CCDC88C-202ENST00000334448 ERAP1Q9NZ08 941 aa16.49■□□□□ 0.23
CCDC88C-202ENST00000334448 TRAF3IP3Q9Y228 551 aa16.49■□□□□ 0.23
CCDC88C-202ENST00000334448 CASP8AP2Q9UKL3 1982 aa16.49■□□□□ 0.23
CCDC88C-202ENST00000334448 ARID2Q68CP9 1835 aa16.48■□□□□ 0.23
CCDC88C-202ENST00000334448 IGKV6-21A0A0C4DH24 114 aa16.48■□□□□ 0.23
CCDC88C-202ENST00000334448 ADCY6O43306 1168 aa16.48■□□□□ 0.23
CCDC88C-202ENST00000334448 TBC1D8O95759 1140 aa16.48■□□□□ 0.23
CCDC88C-202ENST00000334448 LGALS2P05162 132 aa16.48■□□□□ 0.23
CCDC88C-202ENST00000334448 ATP1A3P13637 1013 aa16.48■□□□□ 0.23
CCDC88C-202ENST00000334448 EEF1GP26641 437 aaKnown RBP16.48■□□□□ 0.23
CCDC88C-202ENST00000334448 CYP2C19P33261 490 aa16.48■□□□□ 0.23
CCDC88C-202ENST00000334448 ABCD1P33897 745 aa16.48■□□□□ 0.23
CCDC88C-202ENST00000334448 HOXD13P35453 343 aa16.48■□□□□ 0.23
CCDC88C-202ENST00000334448 FLT3LGP49771 235 aa16.48■□□□□ 0.23
CCDC88C-202ENST00000334448 CASP5P51878 434 aa16.48■□□□□ 0.23
CCDC88C-202ENST00000334448 NCKAP1LP55160 1127 aa16.48■□□□□ 0.23
CCDC88C-202ENST00000334448 NKX3-2P78367 333 aa16.48■□□□□ 0.23
CCDC88C-202ENST00000334448 PLCB4Q15147 1175 aa16.48■□□□□ 0.23
CCDC88C-202ENST00000334448 ODR4Q5SWX8 454 aa16.48■□□□□ 0.23
CCDC88C-202ENST00000334448 ANKRD40Q6AI12 368 aa16.48■□□□□ 0.23
CCDC88C-202ENST00000334448 LRRC55Q6ZSA7 311 aa16.48■□□□□ 0.23
CCDC88C-202ENST00000334448 IRF2BP1Q8IU81 584 aa16.48■□□□□ 0.23
CCDC88C-202ENST00000334448 FAM178BQ8IXR5 827 aa16.48■□□□□ 0.23
CCDC88C-202ENST00000334448 AFG1LQ8WV93 481 aa16.48■□□□□ 0.23
CCDC88C-202ENST00000334448 GLG1Q92896 1179 aa16.48■□□□□ 0.23
CCDC88C-202ENST00000334448 HVCN1Q96D96 273 aa16.48■□□□□ 0.23
CCDC88C-202ENST00000334448 MRPL44Q9H9J2 332 aaKnown RBP16.48■□□□□ 0.23
CCDC88C-202ENST00000334448 LIMA1Q9UHB6 759 aaKnown RBP16.48■□□□□ 0.23
CCDC88C-202ENST00000334448 WDR81Q562E7 1941 aa16.48■□□□□ 0.23
CCDC88C-202ENST00000334448 TRIM49BA6NDI0 452 aa16.47■□□□□ 0.23
CCDC88C-202ENST00000334448 ZBTB42B2RXF5 422 aa16.47■□□□□ 0.23
CCDC88C-202ENST00000334448 PDXKO00764 312 aa16.47■□□□□ 0.23
CCDC88C-202ENST00000334448 CBFA2T2O43439 604 aa16.47■□□□□ 0.23
CCDC88C-202ENST00000334448 HBP1O60381 514 aa16.47■□□□□ 0.23
CCDC88C-202ENST00000334448 MAFO75444 373 aaPredicted RBP16.47■□□□□ 0.23
CCDC88C-202ENST00000334448 FGFR1OPO95684 399 aaKnown RBP16.47■□□□□ 0.23
CCDC88C-202ENST00000334448 MMP3P08254 477 aa16.47■□□□□ 0.23
CCDC88C-202ENST00000334448 CYBAP13498 195 aa16.47■□□□□ 0.23
CCDC88C-202ENST00000334448 EMC2Q15006 297 aa16.47■□□□□ 0.23
CCDC88C-202ENST00000334448 LRRC41Q15345 812 aa16.47■□□□□ 0.23
CCDC88C-202ENST00000334448 KNOP1Q1ED39 458 aaKnown RBP16.47■□□□□ 0.23
CCDC88C-202ENST00000334448 GJC2Q5T442 439 aaPredicted RBP16.47■□□□□ 0.23
CCDC88C-202ENST00000334448 MFSD14CQ5VZR4 134 aa16.47■□□□□ 0.23
CCDC88C-202ENST00000334448 CSGALNACT2Q8N6G5 542 aa16.47■□□□□ 0.23
CCDC88C-202ENST00000334448 OR6J1Q8NGC5 347 aa16.47■□□□□ 0.23
CCDC88C-202ENST00000334448 SLC7A3Q8WY07 619 aa16.47■□□□□ 0.23
CCDC88C-202ENST00000334448 CEP63Q96MT8 703 aa16.47■□□□□ 0.23
CCDC88C-202ENST00000334448 CTAGE1Q96RT6 745 aa16.47■□□□□ 0.23
CCDC88C-202ENST00000334448 TSG101Q99816 390 aa16.47■□□□□ 0.23
CCDC88C-202ENST00000334448 JPH2Q9BR39 696 aaPredicted RBP16.47■□□□□ 0.23
CCDC88C-202ENST00000334448 C16orf70Q9BSU1 422 aa16.47■□□□□ 0.23
CCDC88C-202ENST00000334448 TRIM5Q9C035 493 aa16.47■□□□□ 0.23
CCDC88C-202ENST00000334448 ZHX3Q9H4I2 956 aa16.47■□□□□ 0.23
CCDC88C-202ENST00000334448 FAM184BQ9ULE4 1060 aa16.47■□□□□ 0.23
CCDC88C-202ENST00000334448 PCDHB13Q9Y5F0 798 aa16.47■□□□□ 0.23
CCDC88C-202ENST00000334448 COL1A2P08123 1366 aa16.47■□□□□ 0.23
CCDC88C-202ENST00000334448 DOCK3Q8IZD9 2030 aa16.46■□□□□ 0.23
CCDC88C-202ENST00000334448 A0A1B0GTH6 734 aa16.46■□□□□ 0.23
CCDC88C-202ENST00000334448 GPR25O00155 361 aa16.46■□□□□ 0.23
CCDC88C-202ENST00000334448 MYBP10242 640 aa16.46■□□□□ 0.23
CCDC88C-202ENST00000334448 AKR1A1P14550 325 aa16.46■□□□□ 0.23
CCDC88C-202ENST00000334448 HOXD10P28358 340 aa16.46■□□□□ 0.23
CCDC88C-202ENST00000334448 ARL2P36404 184 aa16.46■□□□□ 0.23
CCDC88C-202ENST00000334448 SNRPFP62306 86 aaKnown RBP16.46■□□□□ 0.23
CCDC88C-202ENST00000334448 GTF2BQ00403 316 aa16.46■□□□□ 0.23
CCDC88C-202ENST00000334448 FKBP3Q00688 224 aaKnown RBP16.46■□□□□ 0.23
CCDC88C-202ENST00000334448 CAP1Q01518 475 aa16.46■□□□□ 0.23
CCDC88C-202ENST00000334448 PRKCZQ05513 592 aa16.46■□□□□ 0.23
CCDC88C-202ENST00000334448 DGKDQ16760 1214 aa16.46■□□□□ 0.23
CCDC88C-202ENST00000334448 TPD52L1Q16890 204 aaPredicted RBP16.46■□□□□ 0.23
CCDC88C-202ENST00000334448 MTERF2Q49AM1 385 aa16.46■□□□□ 0.23
CCDC88C-202ENST00000334448 TRIM50Q86XT4 487 aa16.46■□□□□ 0.23
CCDC88C-202ENST00000334448 FAM114A1Q8IWE2 563 aa16.46■□□□□ 0.23
CCDC88C-202ENST00000334448 GOLGA5Q8TBA6 731 aa16.46■□□□□ 0.23
CCDC88C-202ENST00000334448 TRIB2Q92519 343 aa16.46■□□□□ 0.23
CCDC88C-202ENST00000334448 TYW1Q9NV66 732 aaKnown RBP16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms