RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 A0A087X0T9 212 aa15.9■□□□□ 0.14
TCOF1-201ENST00000323668 FAM228BP0C875 321 aa15.9■□□□□ 0.14
TCOF1-201ENST00000323668 EZH2Q15910 746 aaKnown RBP15.9■□□□□ 0.14
TCOF1-201ENST00000323668 KAZNQ674X7 775 aa15.9■□□□□ 0.14
TCOF1-201ENST00000323668 LRIG3Q6UXM1 1119 aa15.9■□□□□ 0.14
TCOF1-201ENST00000323668 PALM2Q8IXS6 379 aa15.9■□□□□ 0.14
TCOF1-201ENST00000323668 LRRC8CQ8TDW0 803 aa15.9■□□□□ 0.14
TCOF1-201ENST00000323668 RNPC3Q96LT9 517 aaKnown RBP15.9■□□□□ 0.14
TCOF1-201ENST00000323668 TSNARE1Q96NA8 513 aa15.9■□□□□ 0.14
TCOF1-201ENST00000323668 FAM196BA6NMK8 535 aa15.9■□□□□ 0.14
TCOF1-201ENST00000323668 PHBP35232 272 aa15.9■□□□□ 0.14
TCOF1-201ENST00000323668 BFSP1Q12934 665 aa15.9■□□□□ 0.14
TCOF1-201ENST00000323668 ARHGAP24Q8N264 748 aa15.9■□□□□ 0.14
TCOF1-201ENST00000323668 DUSP9Q99956 384 aaKnown RBP15.9■□□□□ 0.14
TCOF1-201ENST00000323668 TBK1Q9UHD2 729 aa15.9■□□□□ 0.14
TCOF1-201ENST00000323668 RIMBP3CA6NJZ7 1639 aa15.9■□□□□ 0.14
TCOF1-201ENST00000323668 RIMBP3BA6NNM3 1639 aa15.9■□□□□ 0.14
TCOF1-201ENST00000323668 RIMBP3Q9UFD9 1639 aa15.9■□□□□ 0.14
TCOF1-201ENST00000323668 F5H6K3 240 aa15.9■□□□□ 0.14
TCOF1-201ENST00000323668 FOXP2O15409 715 aa15.9■□□□□ 0.14
TCOF1-201ENST00000323668 CHRNA3P32297 505 aa15.9■□□□□ 0.14
TCOF1-201ENST00000323668 GALCP54803 685 aa15.9■□□□□ 0.14
TCOF1-201ENST00000323668 KLRC3Q07444 240 aa15.9■□□□□ 0.14
TCOF1-201ENST00000323668 LGSNQ5TDP6 509 aa15.9■□□□□ 0.14
TCOF1-201ENST00000323668 ARHGEF16Q5VV41 709 aa15.9■□□□□ 0.14
TCOF1-201ENST00000323668 TBC1D1Q86TI0 1168 aaPredicted RBP15.9■□□□□ 0.14
TCOF1-201ENST00000323668 CHMP6Q96FZ7 201 aa15.9■□□□□ 0.14
TCOF1-201ENST00000323668 TTI1O43156 1089 aa15.89■□□□□ 0.14
TCOF1-201ENST00000323668 FTLP02792 175 aaPredicted RBP15.89■□□□□ 0.14
TCOF1-201ENST00000323668 MEA1Q16626 185 aa15.89■□□□□ 0.14
TCOF1-201ENST00000323668 FBXW10Q5XX13 1052 aa15.89■□□□□ 0.14
TCOF1-201ENST00000323668 CLEC10AQ8IUN9 316 aa15.89■□□□□ 0.14
TCOF1-201ENST00000323668 CALR3Q96L12 384 aaKnown RBP15.89■□□□□ 0.14
TCOF1-201ENST00000323668 PPP1R12CQ9BZL4 782 aa15.89■□□□□ 0.14
TCOF1-201ENST00000323668 GH2P01242 217 aa15.89■□□□□ 0.13
TCOF1-201ENST00000323668 GCLMP48507 274 aa15.89■□□□□ 0.13
TCOF1-201ENST00000323668 TRIP13Q15645 432 aaPredicted RBP15.89■□□□□ 0.13
TCOF1-201ENST00000323668 NBPF9Q3BBW0 867 aa15.89■□□□□ 0.13
TCOF1-201ENST00000323668 RSAD2Q8WXG1 361 aa15.89■□□□□ 0.13
TCOF1-201ENST00000323668 ARL8AQ96BM9 186 aa15.89■□□□□ 0.13
TCOF1-201ENST00000323668 CIB2O75838 187 aa15.89■□□□□ 0.13
TCOF1-201ENST00000323668 STAMBPO95630 424 aa15.89■□□□□ 0.13
TCOF1-201ENST00000323668 TRIM49P0CI25 452 aa15.89■□□□□ 0.13
TCOF1-201ENST00000323668 TRIM49CP0CI26 452 aa15.89■□□□□ 0.13
TCOF1-201ENST00000323668 PPP1R21Q6ZMI0 780 aa15.89■□□□□ 0.13
TCOF1-201ENST00000323668 DYDC2Q96IM9 177 aa15.89■□□□□ 0.13
TCOF1-201ENST00000323668 ISCUQ9H1K1 167 aa15.89■□□□□ 0.13
TCOF1-201ENST00000323668 SEC24CP53992 1094 aa15.89■□□□□ 0.13
TCOF1-201ENST00000323668 CCDC38Q502W7 563 aa15.89■□□□□ 0.13
TCOF1-201ENST00000323668 XXYLT1Q8NBI6 393 aa15.89■□□□□ 0.13
TCOF1-201ENST00000323668 HVCN1Q96D96 273 aa15.89■□□□□ 0.13
TCOF1-201ENST00000323668 EIF2AK1Q9BQI3 630 aaKnown RBP15.89■□□□□ 0.13
TCOF1-201ENST00000323668 INTS2Q9H0H0 1204 aaKnown RBP15.89■□□□□ 0.13
TCOF1-201ENST00000323668 SLC37A4O43826 429 aa15.88■□□□□ 0.13
TCOF1-201ENST00000323668 EYA4O95677 639 aa15.88■□□□□ 0.13
TCOF1-201ENST00000323668 GBP7Q8N8V2 638 aaPredicted RBP15.88■□□□□ 0.13
TCOF1-201ENST00000323668 MARCH10Q8NA82 808 aaPredicted RBP15.88■□□□□ 0.13
TCOF1-201ENST00000323668 KMT5AQ9NQR1 393 aa15.88■□□□□ 0.13
TCOF1-201ENST00000323668 AKAP12Q02952 1782 aa15.88■□□□□ 0.13
TCOF1-201ENST00000323668 GOLGA8IPA6NC78 632 aa15.88■□□□□ 0.13
TCOF1-201ENST00000323668 GOLGA8JA6NMD2 632 aa15.88■□□□□ 0.13
TCOF1-201ENST00000323668 BYSLQ13895 437 aaKnown RBP15.88■□□□□ 0.13
TCOF1-201ENST00000323668 DHX34Q14147 1143 aaKnown RBP15.88■□□□□ 0.13
TCOF1-201ENST00000323668 DDX42Q86XP3 938 aaKnown RBP eCLIP15.88■□□□□ 0.13
TCOF1-201ENST00000323668 FAM81BQ96LP2 452 aa15.88■□□□□ 0.13
TCOF1-201ENST00000323668 HSD3B7Q9H2F3 369 aa15.88■□□□□ 0.13
TCOF1-201ENST00000323668 RIC1Q4ADV7 1423 aa15.88■□□□□ 0.13
TCOF1-201ENST00000323668 NFIXQ14938 502 aa15.88■□□□□ 0.13
TCOF1-201ENST00000323668 OR2W6PQ8NHA6 318 aa15.88■□□□□ 0.13
TCOF1-201ENST00000323668 DNAJC17Q9NVM6 304 aaKnown RBP15.88■□□□□ 0.13
TCOF1-201ENST00000323668 DAGLAQ9Y4D2 1042 aa15.88■□□□□ 0.13
TCOF1-201ENST00000323668 PRELPP51888 382 aa15.88■□□□□ 0.13
TCOF1-201ENST00000323668 ITIH3Q06033 890 aa15.88■□□□□ 0.13
TCOF1-201ENST00000323668 REEP2Q9BRK0 252 aa15.88■□□□□ 0.13
TCOF1-201ENST00000323668 GOLPH3Q9H4A6 298 aa15.88■□□□□ 0.13
TCOF1-201ENST00000323668 AZI2Q9H6S1 392 aa15.88■□□□□ 0.13
TCOF1-201ENST00000323668 JMJD4Q9H9V9 463 aa15.88■□□□□ 0.13
TCOF1-201ENST00000323668 PITPNM2Q9BZ72 1349 aa15.87■□□□□ 0.13
TCOF1-201ENST00000323668 I3L4J1 428 aa15.87■□□□□ 0.13
TCOF1-201ENST00000323668 CRKP46108 304 aa15.87■□□□□ 0.13
TCOF1-201ENST00000323668 CTAGE3PQ8IX95 158 aa15.87■□□□□ 0.13
TCOF1-201ENST00000323668 MRPL47Q9HD33 250 aaKnown RBP15.87■□□□□ 0.13
TCOF1-201ENST00000323668 RGL1Q9NZL6 768 aa15.87■□□□□ 0.13
TCOF1-201ENST00000323668 GPR75-ASB3A0A0A6YYF3 556 aa15.87■□□□□ 0.13
TCOF1-201ENST00000323668 SMIM22K7EJ46 135 aa15.87■□□□□ 0.13
TCOF1-201ENST00000323668 SLC16A3O15427 465 aaKnown RBP15.87■□□□□ 0.13
TCOF1-201ENST00000323668 KSR1Q8IVT5 923 aa15.87■□□□□ 0.13
TCOF1-201ENST00000323668 RPUSD2Q8IZ73 545 aaKnown RBP15.87■□□□□ 0.13
TCOF1-201ENST00000323668 STK33Q9BYT3 514 aa15.87■□□□□ 0.13
TCOF1-201ENST00000323668 KLC4Q9NSK0 619 aa15.87■□□□□ 0.13
TCOF1-201ENST00000323668 EVI5O60447 810 aa15.87■□□□□ 0.13
TCOF1-201ENST00000323668 PBX1P40424 430 aa15.87■□□□□ 0.13
TCOF1-201ENST00000323668 AARSP49588 968 aaKnown RBP eCLIP15.87■□□□□ 0.132e-6■■■□□ 15.7
TCOF1-201ENST00000323668 DRP2Q13474 957 aa15.87■□□□□ 0.13
TCOF1-201ENST00000323668 ZNF746Q6NUN9 644 aaPredicted RBP15.87■□□□□ 0.13
TCOF1-201ENST00000323668 MSL3Q8N5Y2 521 aaKnown RBP15.87■□□□□ 0.13
TCOF1-201ENST00000323668 PROCA1Q8NCQ7 364 aaPredicted RBP15.87■□□□□ 0.13
TCOF1-201ENST00000323668 KIAA0895Q8NCT3 520 aa15.87■□□□□ 0.13
TCOF1-201ENST00000323668 GDAP1Q8TB36 358 aa15.87■□□□□ 0.13
TCOF1-201ENST00000323668 NMT1P30419 496 aaKnown RBP15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms