RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 CCDC91Q7Z6B0 441 aa11.43□□□□□ -0.58
COL3A1-202ENST00000317840 CATSPER3Q86XQ3 398 aa11.43□□□□□ -0.58
COL3A1-202ENST00000317840 MYCBPAPQ8TBZ2 947 aa11.43□□□□□ -0.58
COL3A1-202ENST00000317840 FMO2Q99518 471 aa11.43□□□□□ -0.58
COL3A1-202ENST00000317840 TRIM51Q9BSJ1 452 aa11.43□□□□□ -0.58
COL3A1-202ENST00000317840 GLT8D2Q9H1C3 349 aa11.43□□□□□ -0.58
COL3A1-202ENST00000317840 ISCUQ9H1K1 167 aa11.43□□□□□ -0.58
COL3A1-202ENST00000317840 DDX4Q9NQI0 724 aaKnown RBP11.43□□□□□ -0.58
COL3A1-202ENST00000317840 PCDHGC5Q9Y5F6 944 aa11.43□□□□□ -0.58
COL3A1-202ENST00000317840 TAF1P21675 1872 aa11.43□□□□□ -0.58
COL3A1-202ENST00000317840 TOGARAM1Q9Y4F4 1720 aa11.43□□□□□ -0.58
COL3A1-202ENST00000317840 VIMP08670 466 aaKnown RBP11.43□□□□□ -0.58
COL3A1-202ENST00000317840 GKAP1Q5VSY0 366 aaPredicted RBP11.43□□□□□ -0.58
COL3A1-202ENST00000317840 SLC30A10Q6XR72 485 aa11.43□□□□□ -0.58
COL3A1-202ENST00000317840 SUPT20HQ8NEM7 779 aa11.43□□□□□ -0.58
COL3A1-202ENST00000317840 GRIN2DO15399 1336 aa11.43□□□□□ -0.58
COL3A1-202ENST00000317840 AKAP3O75969 853 aa11.42□□□□□ -0.58
COL3A1-202ENST00000317840 SKOR1P84550 965 aa11.42□□□□□ -0.58
COL3A1-202ENST00000317840 CETN1Q12798 172 aa11.42□□□□□ -0.58
COL3A1-202ENST00000317840 COBLL1Q53SF7 1204 aa11.42□□□□□ -0.58
COL3A1-202ENST00000317840 ZFYVE27Q5T4F4 411 aa11.42□□□□□ -0.58
COL3A1-202ENST00000317840 RAB17Q9H0T7 212 aa11.42□□□□□ -0.58
COL3A1-202ENST00000317840 AIPL1Q9NZN9 384 aa11.42□□□□□ -0.58
COL3A1-202ENST00000317840 GMNCA6NCL1 334 aa11.42□□□□□ -0.58
COL3A1-202ENST00000317840 CCDC188H7C350 402 aa11.42□□□□□ -0.58
COL3A1-202ENST00000317840 CTNND1O60716 968 aaKnown RBP11.42□□□□□ -0.58
COL3A1-202ENST00000317840 FERP16591 822 aa11.42□□□□□ -0.58
COL3A1-202ENST00000317840 PON1P27169 355 aa11.42□□□□□ -0.58
COL3A1-202ENST00000317840 SLCO1A2P46721 670 aa11.42□□□□□ -0.58
COL3A1-202ENST00000317840 GALCP54803 685 aa11.42□□□□□ -0.58
COL3A1-202ENST00000317840 RHBDL3P58872 404 aa11.42□□□□□ -0.58
COL3A1-202ENST00000317840 EDRF1Q3B7T1 1238 aa11.42□□□□□ -0.58
COL3A1-202ENST00000317840 NSMFQ6X4W1 530 aa11.42□□□□□ -0.58
COL3A1-202ENST00000317840 FBXO11Q86XK2 927 aa11.42□□□□□ -0.58
COL3A1-202ENST00000317840 FAM178BQ8IXR5 827 aa11.42□□□□□ -0.58
COL3A1-202ENST00000317840 CERS5Q8N5B7 392 aa11.42□□□□□ -0.58
COL3A1-202ENST00000317840 AMNQ9BXJ7 453 aa11.42□□□□□ -0.58
COL3A1-202ENST00000317840 ARHGEF10LQ9HCE6 1279 aa11.42□□□□□ -0.58
COL3A1-202ENST00000317840 RASAL2Q9UJF2 1139 aa11.42□□□□□ -0.58
COL3A1-202ENST00000317840 SNX24Q9Y343 169 aa11.42□□□□□ -0.58
COL3A1-202ENST00000317840 DAAM1Q9Y4D1 1078 aa11.42□□□□□ -0.58
COL3A1-202ENST00000317840 HGSO14964 777 aaPredicted RBP11.42□□□□□ -0.58
COL3A1-202ENST00000317840 DPEP1P16444 411 aa11.42□□□□□ -0.58
COL3A1-202ENST00000317840 IFNAR2P48551 515 aa11.42□□□□□ -0.58
COL3A1-202ENST00000317840 TBC1D10BQ4KMP7 808 aaPredicted RBP11.42□□□□□ -0.58
COL3A1-202ENST00000317840 STXBP4Q6ZWJ1 553 aa11.42□□□□□ -0.58
COL3A1-202ENST00000317840 KSR1Q8IVT5 923 aa11.42□□□□□ -0.58
COL3A1-202ENST00000317840 TRIM49P0CI25 452 aa11.41□□□□□ -0.58
COL3A1-202ENST00000317840 TRIM49CP0CI26 452 aa11.41□□□□□ -0.58
COL3A1-202ENST00000317840 DENND2CQ68D51 928 aa11.41□□□□□ -0.58
COL3A1-202ENST00000317840 ARHGAP27Q6ZUM4 889 aa11.41□□□□□ -0.58
COL3A1-202ENST00000317840 FRMD5Q7Z6J6 570 aa11.41□□□□□ -0.58
COL3A1-202ENST00000317840 TPCN2Q8NHX9 752 aa11.41□□□□□ -0.58
COL3A1-202ENST00000317840 PRMT6Q96LA8 375 aaPredicted RBP11.41□□□□□ -0.58
COL3A1-202ENST00000317840 OSGEPQ9NPF4 335 aa11.41□□□□□ -0.58
COL3A1-202ENST00000317840 DNAJC12Q9UKB3 198 aa11.41□□□□□ -0.58
COL3A1-202ENST00000317840 EVI5O60447 810 aa11.41□□□□□ -0.58
COL3A1-202ENST00000317840 FAM107AO95990 144 aa11.41□□□□□ -0.58
COL3A1-202ENST00000317840 NMT1P30419 496 aaKnown RBP11.41□□□□□ -0.58
COL3A1-202ENST00000317840 MAP2K2P36507 400 aa11.41□□□□□ -0.58
COL3A1-202ENST00000317840 KCNA1Q09470 495 aa11.41□□□□□ -0.58
COL3A1-202ENST00000317840 SHROOM1Q2M3G4 852 aaPredicted RBP11.41□□□□□ -0.58
COL3A1-202ENST00000317840 ZCWPW2Q504Y3 356 aa11.41□□□□□ -0.58
COL3A1-202ENST00000317840 PPP1R18Q6NYC8 613 aa11.41□□□□□ -0.58
COL3A1-202ENST00000317840 HOOK3Q86VS8 718 aa11.41□□□□□ -0.58
COL3A1-202ENST00000317840 ANKS4BQ8N8V4 417 aa11.41□□□□□ -0.58
COL3A1-202ENST00000317840 KAT2BQ92831 832 aa11.41□□□□□ -0.58
COL3A1-202ENST00000317840 NAP1L3Q99457 506 aaPredicted RBP11.41□□□□□ -0.58
COL3A1-202ENST00000317840 SWAP70Q9UH65 585 aa11.41□□□□□ -0.58
COL3A1-202ENST00000317840 CASZ1Q86V15 1759 aa11.41□□□□□ -0.58
COL3A1-202ENST00000317840 RGS16O15492 202 aaPredicted RBP11.41□□□□□ -0.58
COL3A1-202ENST00000317840 PPP1R11O60927 126 aaPredicted RBP11.41□□□□□ -0.58
COL3A1-202ENST00000317840 MYCLP12524 364 aaPredicted RBP11.41□□□□□ -0.58
COL3A1-202ENST00000317840 GUCY2CP25092 1073 aa11.41□□□□□ -0.58
COL3A1-202ENST00000317840 PSMC2P35998 433 aaKnown RBP11.41□□□□□ -0.58
COL3A1-202ENST00000317840 PPP2R2AP63151 447 aa11.41□□□□□ -0.58
COL3A1-202ENST00000317840 DR1Q01658 176 aa11.41□□□□□ -0.58
COL3A1-202ENST00000317840 DRAP1Q14919 205 aaPredicted RBP11.41□□□□□ -0.58
COL3A1-202ENST00000317840 R3HDM1Q15032 1099 aaKnown RBP11.41□□□□□ -0.58
COL3A1-202ENST00000317840 ZC2HC1CQ53FD0 456 aaPredicted RBP11.41□□□□□ -0.58
COL3A1-202ENST00000317840 ODR4Q5SWX8 454 aa11.41□□□□□ -0.58
COL3A1-202ENST00000317840 CYFIP2Q96F07 1278 aa11.41□□□□□ -0.58
COL3A1-202ENST00000317840 FAM114A2Q9NRY5 505 aa11.41□□□□□ -0.58
COL3A1-202ENST00000317840 TYW1Q9NV66 732 aaKnown RBP11.41□□□□□ -0.58
COL3A1-202ENST00000317840 TMOD4Q9NZQ9 345 aa11.41□□□□□ -0.58
COL3A1-202ENST00000317840 PTPN22Q9Y2R2 807 aa11.41□□□□□ -0.58
COL3A1-202ENST00000317840 DDTLA6NHG4 134 aaPredicted RBP11.4□□□□□ -0.58
COL3A1-202ENST00000317840 PHF20L1A8MW92 1017 aa11.4□□□□□ -0.58
COL3A1-202ENST00000317840 SPOPO43791 374 aa11.4□□□□□ -0.58
COL3A1-202ENST00000317840 CCDC105Q8IYK2 499 aa11.4□□□□□ -0.58
COL3A1-202ENST00000317840 MDM1Q8TC05 714 aa11.4□□□□□ -0.58
COL3A1-202ENST00000317840 TAOK3Q9H2K8 898 aa11.4□□□□□ -0.58
COL3A1-202ENST00000317840 MTRF1LQ9UGC7 380 aaKnown RBP11.4□□□□□ -0.58
COL3A1-202ENST00000317840 CACNA1SQ13698 1873 aa11.4□□□□□ -0.58
COL3A1-202ENST00000317840 F5H6K3 240 aa11.4□□□□□ -0.58
COL3A1-202ENST00000317840 RBAK-RBAKDNI3L0D1 243 aa11.4□□□□□ -0.58
COL3A1-202ENST00000317840 LMNB1P20700 586 aa11.4□□□□□ -0.58
COL3A1-202ENST00000317840 HOXA7P31268 230 aaPredicted RBP11.4□□□□□ -0.58
COL3A1-202ENST00000317840 KLRC3Q07444 240 aa11.4□□□□□ -0.58
COL3A1-202ENST00000317840 MESDQ14696 234 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms