RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 NLRP11P59045 1033 aaKnown RBP13.49□□□□□ -0.25
SCFD1-201ENST00000311943 SF3A1Q15459 793 aaKnown RBP13.49□□□□□ -0.25
SCFD1-201ENST00000311943 ZRSR1Q15695 479 aaKnown RBP13.49□□□□□ -0.25
SCFD1-201ENST00000311943 FAM26DQ5JW98 314 aa13.49□□□□□ -0.25
SCFD1-201ENST00000311943 TAF2Q6P1X5 1199 aa13.49□□□□□ -0.25
SCFD1-201ENST00000311943 PSRC1Q6PGN9 363 aaPredicted RBP13.49□□□□□ -0.25
SCFD1-201ENST00000311943 USP49Q70CQ1 688 aa13.49□□□□□ -0.25
SCFD1-201ENST00000311943 RPUSD2Q8IZ73 545 aaKnown RBP13.49□□□□□ -0.25
SCFD1-201ENST00000311943 CCDC155Q8N6L0 562 aa13.49□□□□□ -0.25
SCFD1-201ENST00000311943 NIFKQ9BYG3 293 aaKnown RBP13.49□□□□□ -0.25
SCFD1-201ENST00000311943 IFIH1Q9BYX4 1025 aaKnown RBP13.49□□□□□ -0.25
SCFD1-201ENST00000311943 CELF4Q9BZC1 486 aaKnown RBP13.49□□□□□ -0.25
SCFD1-201ENST00000311943 TMX1Q9H3N1 280 aa13.49□□□□□ -0.25
SCFD1-201ENST00000311943 GPRC5CQ9NQ84 441 aa13.49□□□□□ -0.25
SCFD1-201ENST00000311943 XPNPEP1Q9NQW7 623 aa13.49□□□□□ -0.25
SCFD1-201ENST00000311943 NRBP2Q9NSY0 501 aa13.49□□□□□ -0.25
SCFD1-201ENST00000311943 TFIP11Q9UBB9 837 aaKnown RBP13.49□□□□□ -0.25
SCFD1-201ENST00000311943 AKT3Q9Y243 479 aa13.49□□□□□ -0.25
SCFD1-201ENST00000311943 UNC80Q8N2C7 3258 aa13.49□□□□□ -0.25
SCFD1-201ENST00000311943 VWA3AA6NCI4 1184 aa13.49□□□□□ -0.25
SCFD1-201ENST00000311943 STX6O43752 255 aa13.49□□□□□ -0.25
SCFD1-201ENST00000311943 UPP2O95045 317 aa13.49□□□□□ -0.25
SCFD1-201ENST00000311943 MARCKSP29966 332 aaPredicted RBP13.49□□□□□ -0.25
SCFD1-201ENST00000311943 TBC1D8BQ0IIM8 1120 aa13.49□□□□□ -0.25
SCFD1-201ENST00000311943 XKR9Q5GH70 373 aa13.49□□□□□ -0.25
SCFD1-201ENST00000311943 RDM1Q8NG50 284 aa13.49□□□□□ -0.25
SCFD1-201ENST00000311943 NAP1L4Q99733 375 aaKnown RBP13.49□□□□□ -0.25
SCFD1-201ENST00000311943 SLC4A7Q9Y6M7 1214 aa13.49□□□□□ -0.25
SCFD1-201ENST00000311943 VCANP13611 3396 aa13.48□□□□□ -0.25
SCFD1-201ENST00000311943 DNAJB2P25686 324 aa13.48□□□□□ -0.25
SCFD1-201ENST00000311943 TRAPPC10P48553 1259 aa13.48□□□□□ -0.25
SCFD1-201ENST00000311943 ATP2C1P98194 919 aaPredicted RBP13.48□□□□□ -0.25
SCFD1-201ENST00000311943 NFX1Q12986 1120 aaKnown RBP13.48□□□□□ -0.25
SCFD1-201ENST00000311943 C4orf19Q8IY42 314 aa13.48□□□□□ -0.25
SCFD1-201ENST00000311943 CLIC6Q96NY7 704 aa13.48□□□□□ -0.25
SCFD1-201ENST00000311943 USP28Q96RU2 1077 aa13.48□□□□□ -0.25
SCFD1-201ENST00000311943 NKX2-4Q9H2Z4 354 aa13.48□□□□□ -0.25
SCFD1-201ENST00000311943 ADAMTS10Q9H324 1103 aa13.48□□□□□ -0.25
SCFD1-201ENST00000311943 PADI3Q9ULW8 664 aa13.48□□□□□ -0.25
SCFD1-201ENST00000311943 USP20Q9Y2K6 914 aa13.48□□□□□ -0.25
SCFD1-201ENST00000311943 ZDHHC9Q9Y397 364 aa13.48□□□□□ -0.25
SCFD1-201ENST00000311943 KIF3AQ9Y496 699 aa13.48□□□□□ -0.25
SCFD1-201ENST00000311943 A0A1W2PPC1 479 aa13.47□□□□□ -0.25
SCFD1-201ENST00000311943 E9PMD0 336 aa13.47□□□□□ -0.25
SCFD1-201ENST00000311943 RFXAPO00287 272 aa13.47□□□□□ -0.25
SCFD1-201ENST00000311943 ATP2A2P16615 1042 aaKnown RBP13.47□□□□□ -0.25
SCFD1-201ENST00000311943 GATMP50440 423 aa13.47□□□□□ -0.25
SCFD1-201ENST00000311943 RILPL1Q5EBL4 403 aa13.47□□□□□ -0.25
SCFD1-201ENST00000311943 CNKSR3Q6P9H4 555 aa13.47□□□□□ -0.25
SCFD1-201ENST00000311943 RPAINQ86UA6 219 aa13.47□□□□□ -0.25
SCFD1-201ENST00000311943 MYOCDQ8IZQ8 938 aa13.47□□□□□ -0.25
SCFD1-201ENST00000311943 ZSWIM4Q9H7M6 989 aa13.47□□□□□ -0.25
SCFD1-201ENST00000311943 TRPV2Q9Y5S1 764 aa13.47□□□□□ -0.25
SCFD1-201ENST00000311943 SPTBN5Q9NRC6 3674 aaKnown RBP13.47□□□□□ -0.25
SCFD1-201ENST00000311943 COL1A2P08123 1366 aa13.47□□□□□ -0.25
SCFD1-201ENST00000311943 ARID2Q68CP9 1835 aa13.47□□□□□ -0.25
SCFD1-201ENST00000311943 A0A087WZ62 844 aa13.47□□□□□ -0.25
SCFD1-201ENST00000311943 IGKV6-21A0A0C4DH24 114 aa13.47□□□□□ -0.25
SCFD1-201ENST00000311943 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.47□□□□□ -0.25
SCFD1-201ENST00000311943 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.47□□□□□ -0.25
SCFD1-201ENST00000311943 HSP90AA1P07900 732 aaKnown RBP13.47□□□□□ -0.25
SCFD1-201ENST00000311943 RARRES1P49788 294 aa13.47□□□□□ -0.25
SCFD1-201ENST00000311943 GPC3P51654 580 aa13.47□□□□□ -0.25
SCFD1-201ENST00000311943 PTPAQ15257 358 aa13.47□□□□□ -0.25
SCFD1-201ENST00000311943 FAM228AQ86W67 206 aa13.47□□□□□ -0.25
SCFD1-201ENST00000311943 RHPN2Q8IUC4 686 aa13.47□□□□□ -0.25
SCFD1-201ENST00000311943 IGSF22Q8N9C0 903 aa13.47□□□□□ -0.25
SCFD1-201ENST00000311943 FAM167AQ96KS9 214 aa13.47□□□□□ -0.25
SCFD1-201ENST00000311943 NLRP4Q96MN2 994 aa13.47□□□□□ -0.25
SCFD1-201ENST00000311943 FDXACB1Q9BRP7 624 aaPredicted RBP13.47□□□□□ -0.25
SCFD1-201ENST00000311943 MINDY3Q9H8M7 445 aa13.47□□□□□ -0.25
SCFD1-201ENST00000311943 LRWD1Q9UFC0 647 aa13.47□□□□□ -0.25
SCFD1-201ENST00000311943 KIAA1024Q9UPX6 916 aa13.47□□□□□ -0.25
SCFD1-201ENST00000311943 USO1O60763 962 aaKnown RBP13.46□□□□□ -0.25
SCFD1-201ENST00000311943 MAFO75444 373 aaPredicted RBP13.46□□□□□ -0.25
SCFD1-201ENST00000311943 CA3P07451 260 aa13.46□□□□□ -0.25
SCFD1-201ENST00000311943 CCT6AP40227 531 aaKnown RBP13.46□□□□□ -0.25
SCFD1-201ENST00000311943 FXR2P51116 673 aaKnown RBP eCLIP13.46□□□□□ -0.25
SCFD1-201ENST00000311943 LONRF3Q496Y0 759 aa13.46□□□□□ -0.25
SCFD1-201ENST00000311943 DEFB123Q8N688 67 aa13.46□□□□□ -0.25
SCFD1-201ENST00000311943 SNX29Q8TEQ0 813 aa13.46□□□□□ -0.25
SCFD1-201ENST00000311943 PNMA5Q96PV4 448 aa13.46□□□□□ -0.25
SCFD1-201ENST00000311943 DHX33Q9H6R0 707 aaKnown RBP13.46□□□□□ -0.25
SCFD1-201ENST00000311943 SUCLA2Q9P2R7 463 aaPredicted RBP13.46□□□□□ -0.25
SCFD1-201ENST00000311943 HCSTQ9UBK5 93 aa13.46□□□□□ -0.25
SCFD1-201ENST00000311943 MICAL3Q7RTP6 2002 aa13.46□□□□□ -0.25
SCFD1-201ENST00000311943 RFC2P35250 354 aa13.46□□□□□ -0.26
SCFD1-201ENST00000311943 IKBKEQ14164 716 aa13.46□□□□□ -0.26
SCFD1-201ENST00000311943 GRIN2CQ14957 1233 aa13.46□□□□□ -0.26
SCFD1-201ENST00000311943 IER5Q5VY09 327 aa13.46□□□□□ -0.26
SCFD1-201ENST00000311943 ASAP3Q8TDY4 903 aa13.46□□□□□ -0.26
SCFD1-201ENST00000311943 PRPF31Q8WWY3 499 aaKnown RBP13.46□□□□□ -0.26
SCFD1-201ENST00000311943 DDX19AQ9NUU7 478 aaKnown RBP13.46□□□□□ -0.26
SCFD1-201ENST00000311943 ST3GAL5Q9UNP4 418 aa13.46□□□□□ -0.26
SCFD1-201ENST00000311943 CEP131Q9UPN4 1083 aa13.46□□□□□ -0.26
SCFD1-201ENST00000311943 EPOPA6NHQ4 379 aa13.45□□□□□ -0.26
SCFD1-201ENST00000311943 ENPP3O14638 875 aa13.45□□□□□ -0.26
SCFD1-201ENST00000311943 SRGAP2CP0DJJ0 459 aa13.45□□□□□ -0.26
SCFD1-201ENST00000311943 POLGP54098 1239 aaPredicted RBP13.45□□□□□ -0.26
SCFD1-201ENST00000311943 EMC2Q15006 297 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms