RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 TBC1D8BQ0IIM8 1120 aa20.21■□□□□ 0.83
HMGA1-201ENST00000311487 TARBP2Q15633 366 aaKnown RBP20.21■□□□□ 0.83
HMGA1-201ENST00000311487 ARSHQ5FYA8 562 aa20.21■□□□□ 0.83
HMGA1-201ENST00000311487 NFRKBQ6P4R8 1299 aa20.21■□□□□ 0.83
HMGA1-201ENST00000311487 SLC39A5Q6ZMH5 540 aa20.21■□□□□ 0.83
HMGA1-201ENST00000311487 CEP57L1Q8IYX8 460 aa20.21■□□□□ 0.83
HMGA1-201ENST00000311487 GTF2IRD1Q9UHL9 959 aa20.21■□□□□ 0.83
HMGA1-201ENST00000311487 KAT6AQ92794 2004 aa20.21■□□□□ 0.83
HMGA1-201ENST00000311487 A0A0U1RQG5 324 aaPredicted RBP20.21■□□□□ 0.83
HMGA1-201ENST00000311487 FAM237AA0A1B0GTK4 181 aa20.21■□□□□ 0.83
HMGA1-201ENST00000311487 B4GALT4O60513 344 aa20.21■□□□□ 0.83
HMGA1-201ENST00000311487 PRR29P0C7W0 189 aa20.21■□□□□ 0.83
HMGA1-201ENST00000311487 COL6A1P12109 1028 aa20.21■□□□□ 0.83
HMGA1-201ENST00000311487 PTGISQ16647 500 aa20.21■□□□□ 0.83
HMGA1-201ENST00000311487 RINT1Q6NUQ1 792 aa20.21■□□□□ 0.83
HMGA1-201ENST00000311487 MTHFD1LQ6UB35 978 aa20.21■□□□□ 0.83
HMGA1-201ENST00000311487 SV2BQ7L1I2 683 aa20.21■□□□□ 0.83
HMGA1-201ENST00000311487 SYT2Q8N9I0 419 aaPredicted RBP20.21■□□□□ 0.83
HMGA1-201ENST00000311487 WNT8BQ93098 351 aa20.21■□□□□ 0.83
HMGA1-201ENST00000311487 ANKEF1Q9NU02 776 aa20.21■□□□□ 0.83
HMGA1-201ENST00000311487 TUBE1Q9UJT0 475 aa20.21■□□□□ 0.83
HMGA1-201ENST00000311487 DBR1Q9UK59 544 aaKnown RBP20.21■□□□□ 0.83
HMGA1-201ENST00000311487 NRCAMQ92823 1304 aa20.2■□□□□ 0.82
HMGA1-201ENST00000311487 MYMKA6NI61 221 aa20.2■□□□□ 0.82
HMGA1-201ENST00000311487 RSPH10B2B2RC85 870 aa20.2■□□□□ 0.82
HMGA1-201ENST00000311487 ARVCFO00192 962 aa20.2■□□□□ 0.82
HMGA1-201ENST00000311487 RSPH10BP0C881 870 aa20.2■□□□□ 0.82
HMGA1-201ENST00000311487 CYP2C9P11712 490 aa20.2■□□□□ 0.82
HMGA1-201ENST00000311487 XRCC6P12956 609 aaKnown RBP eCLIP20.2■□□□□ 0.82
HMGA1-201ENST00000311487 LRRC26Q2I0M4 334 aa20.2■□□□□ 0.82
HMGA1-201ENST00000311487 TRIM60Q495X7 471 aa20.2■□□□□ 0.82
HMGA1-201ENST00000311487 EFCAB12Q6NXP0 572 aa20.2■□□□□ 0.82
HMGA1-201ENST00000311487 KRBA2Q6ZNG9 492 aa20.2■□□□□ 0.82
HMGA1-201ENST00000311487 PAGE5Q96GU1 130 aa20.2■□□□□ 0.82
HMGA1-201ENST00000311487 CTAGE1Q96RT6 745 aa20.2■□□□□ 0.82
HMGA1-201ENST00000311487 ZHX3Q9H4I2 956 aa20.2■□□□□ 0.82
HMGA1-201ENST00000311487 ATP11BQ9Y2G3 1177 aa20.2■□□□□ 0.82
HMGA1-201ENST00000311487 C22orf31O95567 290 aa20.19■□□□□ 0.82
HMGA1-201ENST00000311487 SLFN14P0C7P3 912 aa20.19■□□□□ 0.82
HMGA1-201ENST00000311487 MKRN4PQ13434 485 aaPredicted RBP20.19■□□□□ 0.82
HMGA1-201ENST00000311487 EMC2Q15006 297 aa20.19■□□□□ 0.82
HMGA1-201ENST00000311487 FAM102BQ5T8I3 360 aa20.19■□□□□ 0.82
HMGA1-201ENST00000311487 NECAB2Q7Z6G3 386 aa20.19■□□□□ 0.82
HMGA1-201ENST00000311487 KSR1Q8IVT5 923 aa20.19■□□□□ 0.82
HMGA1-201ENST00000311487 XPNPEP1Q9NQW7 623 aa20.19■□□□□ 0.82
HMGA1-201ENST00000311487 STK17AQ9UEE5 414 aa20.19■□□□□ 0.82
HMGA1-201ENST00000311487 EVPLQ92817 2033 aa20.19■□□□□ 0.82
HMGA1-201ENST00000311487 KRT18P05783 430 aaKnown RBP20.19■□□□□ 0.82
HMGA1-201ENST00000311487 CYP11B2P19099 503 aa20.19■□□□□ 0.82
HMGA1-201ENST00000311487 MUTP22033 750 aa20.19■□□□□ 0.82
HMGA1-201ENST00000311487 MRE11P49959 708 aa20.19■□□□□ 0.82
HMGA1-201ENST00000311487 CUL4BQ13620 913 aa20.19■□□□□ 0.82
HMGA1-201ENST00000311487 ZSCAN23Q3MJ62 389 aa20.19■□□□□ 0.82
HMGA1-201ENST00000311487 ZNF484Q5JVG2 852 aa20.19■□□□□ 0.82
HMGA1-201ENST00000311487 C1orf186Q6ZWK4 172 aa20.19■□□□□ 0.82
HMGA1-201ENST00000311487 ANKLE1Q8NAG6 615 aa20.19■□□□□ 0.82
HMGA1-201ENST00000311487 DDX12PQ92771 950 aa20.19■□□□□ 0.82
HMGA1-201ENST00000311487 NOD1Q9Y239 953 aa20.19■□□□□ 0.82
HMGA1-201ENST00000311487 KINO60870 393 aaKnown RBP20.18■□□□□ 0.82
HMGA1-201ENST00000311487 VTNP04004 478 aa20.18■□□□□ 0.82
HMGA1-201ENST00000311487 ZNF445P59923 1031 aa20.18■□□□□ 0.82
HMGA1-201ENST00000311487 PNOCQ13519 176 aa20.18■□□□□ 0.82
HMGA1-201ENST00000311487 DNAJB3Q8WWF6 145 aa20.18■□□□□ 0.82
HMGA1-201ENST00000311487 SLC7A3Q8WY07 619 aa20.18■□□□□ 0.82
HMGA1-201ENST00000311487 GRPEL1Q9HAV7 217 aa20.18■□□□□ 0.82
HMGA1-201ENST00000311487 TMEM63CQ9P1W3 806 aa20.18■□□□□ 0.82
HMGA1-201ENST00000311487 GINS2Q9Y248 185 aa20.18■□□□□ 0.82
HMGA1-201ENST00000311487 ADAM17P78536 824 aa20.17■□□□□ 0.82
HMGA1-201ENST00000311487 REEP2Q9BRK0 252 aa20.17■□□□□ 0.82
HMGA1-201ENST00000311487 KBTBD4Q9NVX7 518 aa20.17■□□□□ 0.82
HMGA1-201ENST00000311487 MAFO75444 373 aaPredicted RBP20.17■□□□□ 0.82
HMGA1-201ENST00000311487 CDK7P50613 346 aa20.17■□□□□ 0.82
HMGA1-201ENST00000311487 HPS3Q969F9 1004 aa20.17■□□□□ 0.82
HMGA1-201ENST00000311487 DHX33Q9H6R0 707 aaKnown RBP20.17■□□□□ 0.82
HMGA1-201ENST00000311487 ATP6V0A4Q9HBG4 840 aa20.17■□□□□ 0.82
HMGA1-201ENST00000311487 RRN3P2A6NIE6 340 aa20.16■□□□□ 0.82
HMGA1-201ENST00000311487 HIP1RO75146 1068 aa20.16■□□□□ 0.82
HMGA1-201ENST00000311487 DGAT1O75907 488 aa20.16■□□□□ 0.82
HMGA1-201ENST00000311487 IDEP14735 1019 aa20.16■□□□□ 0.82
HMGA1-201ENST00000311487 TLE2Q04725 743 aa20.16■□□□□ 0.82
HMGA1-201ENST00000311487 SLC43A3Q8NBI5 491 aa20.16■□□□□ 0.82
HMGA1-201ENST00000311487 TBC1D7Q9P0N9 293 aa20.16■□□□□ 0.82
HMGA1-201ENST00000311487 AKT3Q9Y243 479 aa20.16■□□□□ 0.82
HMGA1-201ENST00000311487 ARID2Q68CP9 1835 aa20.16■□□□□ 0.82
HMGA1-201ENST00000311487 SLC26A4O43511 780 aa20.15■□□□□ 0.82
HMGA1-201ENST00000311487 CTSHP09668 335 aa20.15■□□□□ 0.82
HMGA1-201ENST00000311487 GIT2Q14161 759 aa20.15■□□□□ 0.82
HMGA1-201ENST00000311487 ISM2Q6H9L7 571 aa20.15■□□□□ 0.82
HMGA1-201ENST00000311487 RHPN2Q8IUC4 686 aa20.15■□□□□ 0.82
HMGA1-201ENST00000311487 POLR3FQ9H1D9 316 aaPredicted RBP20.15■□□□□ 0.82
HMGA1-201ENST00000311487 PDLIM7Q9NR12 457 aa20.15■□□□□ 0.82
HMGA1-201ENST00000311487 CSDE1O75534 798 aaKnown RBP20.15■□□□□ 0.82
HMGA1-201ENST00000311487 CAPN15O75808 1086 aa20.15■□□□□ 0.82
HMGA1-201ENST00000311487 GNAT1P11488 350 aa20.15■□□□□ 0.82
HMGA1-201ENST00000311487 HOXC8P31273 242 aa20.15■□□□□ 0.82
HMGA1-201ENST00000311487 RTP1P59025 263 aa20.15■□□□□ 0.82
HMGA1-201ENST00000311487 UBE2Q1Q7Z7E8 422 aa20.15■□□□□ 0.82
HMGA1-201ENST00000311487 FAM126BQ8IXS8 530 aa20.15■□□□□ 0.82
HMGA1-201ENST00000311487 KIAA0319LQ8IZA0 1049 aa20.15■□□□□ 0.82
HMGA1-201ENST00000311487 DAW1Q8N136 415 aa20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms