RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 SKIP12755 728 aa16.59■□□□□ 0.25
SHH-201ENST00000297261 STYK1Q6J9G0 422 aa16.59■□□□□ 0.25
SHH-201ENST00000297261 PALM2Q8IXS6 379 aa16.59■□□□□ 0.25
SHH-201ENST00000297261 ANKRD35Q8N283 1001 aa16.59■□□□□ 0.25
SHH-201ENST00000297261 CCDC127Q96BQ5 260 aa16.59■□□□□ 0.25
SHH-201ENST00000297261 TXLNGQ9NUQ3 528 aa16.59■□□□□ 0.25
SHH-201ENST00000297261 EHD2Q9NZN4 543 aa16.59■□□□□ 0.25
SHH-201ENST00000297261 KIF3CO14782 793 aa16.58■□□□□ 0.25
SHH-201ENST00000297261 FOXP2O15409 715 aa16.58■□□□□ 0.25
SHH-201ENST00000297261 LMNB1P20700 586 aa16.58■□□□□ 0.25
SHH-201ENST00000297261 FAM83BQ5T0W9 1011 aa16.58■□□□□ 0.25
SHH-201ENST00000297261 RNPC3Q96LT9 517 aaKnown RBP16.58■□□□□ 0.25
SHH-201ENST00000297261 TMEM260Q9NX78 707 aa16.58■□□□□ 0.25
SHH-201ENST00000297261 ALAS1P13196 640 aa16.58■□□□□ 0.24
SHH-201ENST00000297261 PDE1CQ14123 709 aaPredicted RBP16.58■□□□□ 0.24
SHH-201ENST00000297261 SYDE2Q5VT97 1194 aa16.58■□□□□ 0.24
SHH-201ENST00000297261 GBP7Q8N8V2 638 aaPredicted RBP16.58■□□□□ 0.24
SHH-201ENST00000297261 ARL8AQ96BM9 186 aa16.58■□□□□ 0.24
SHH-201ENST00000297261 PITPNM3Q9BZ71 974 aa16.58■□□□□ 0.24
SHH-201ENST00000297261 AHDC1Q5TGY3 1603 aaPredicted RBP16.58■□□□□ 0.24
SHH-201ENST00000297261 A0A1W2PQC6 194 aa16.58■□□□□ 0.24
SHH-201ENST00000297261 HOXA10P31260 410 aaPredicted RBP16.58■□□□□ 0.24
SHH-201ENST00000297261 KAZNQ674X7 775 aa16.58■□□□□ 0.24
SHH-201ENST00000297261 FAM178BQ8IXR5 827 aa16.58■□□□□ 0.24
SHH-201ENST00000297261 EMILIN3Q9NT22 766 aa16.58■□□□□ 0.24
SHH-201ENST00000297261 ZBTB12Q9Y330 459 aaPredicted RBP16.58■□□□□ 0.24
SHH-201ENST00000297261 MYO3BQ8WXR4 1341 aa16.58■□□□□ 0.24
SHH-201ENST00000297261 SALL1Q9NSC2 1324 aa16.58■□□□□ 0.24
SHH-201ENST00000297261 PLSCR1O15162 318 aa16.57■□□□□ 0.24
SHH-201ENST00000297261 DIAPH2O60879 1101 aa16.57■□□□□ 0.24
SHH-201ENST00000297261 POLR2MP0CAP2 368 aa16.57■□□□□ 0.24
SHH-201ENST00000297261 TM4SF1P30408 202 aa16.57■□□□□ 0.24
SHH-201ENST00000297261 MSH2P43246 934 aa16.57■□□□□ 0.24
SHH-201ENST00000297261 SGO2Q562F6 1265 aa16.57■□□□□ 0.24
SHH-201ENST00000297261 GSDMBQ8TAX9 411 aa16.57■□□□□ 0.24
SHH-201ENST00000297261 ETNK1Q9HBU6 452 aa16.57■□□□□ 0.24
SHH-201ENST00000297261 DMGDHQ9UI17 866 aaKnown RBP16.57■□□□□ 0.24
SHH-201ENST00000297261 MARF1Q9Y4F3 1742 aaKnown RBP16.57■□□□□ 0.24
SHH-201ENST00000297261 COL18A1P39060 1754 aa16.57■□□□□ 0.24
SHH-201ENST00000297261 ZBTB5O15062 677 aa16.57■□□□□ 0.24
SHH-201ENST00000297261 EVI5O60447 810 aa16.57■□□□□ 0.24
SHH-201ENST00000297261 ADCY2Q08462 1091 aa16.57■□□□□ 0.24
SHH-201ENST00000297261 SLMAPQ14BN4 828 aa16.57■□□□□ 0.24
SHH-201ENST00000297261 TTBK2Q6IQ55 1244 aa16.57■□□□□ 0.24
SHH-201ENST00000297261 KIRREL3Q8IZU9 778 aa16.57■□□□□ 0.24
SHH-201ENST00000297261 CCDC89Q8N998 374 aa16.57■□□□□ 0.24
SHH-201ENST00000297261 FAM217BQ9NTX9 383 aaPredicted RBP16.57■□□□□ 0.24
SHH-201ENST00000297261 TMOD4Q9NZQ9 345 aa16.57■□□□□ 0.24
SHH-201ENST00000297261 GCNT4Q9P109 453 aa16.57■□□□□ 0.24
SHH-201ENST00000297261 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.57■□□□□ 0.24
SHH-201ENST00000297261 PKD1L3Q7Z443 1732 aa16.57■□□□□ 0.24
SHH-201ENST00000297261 ZBED4O75132 1171 aa16.57■□□□□ 0.24
SHH-201ENST00000297261 ECEL1O95672 775 aa16.57■□□□□ 0.24
SHH-201ENST00000297261 STAT2P52630 851 aa16.57■□□□□ 0.24
SHH-201ENST00000297261 UBXN2AP68543 259 aa16.57■□□□□ 0.24
SHH-201ENST00000297261 ZNF211Q13398 564 aaPredicted RBP16.57■□□□□ 0.24
SHH-201ENST00000297261 AZI2Q9H6S1 392 aa16.57■□□□□ 0.24
SHH-201ENST00000297261 SLC40A1Q9NP59 571 aa16.57■□□□□ 0.24
SHH-201ENST00000297261 MRPL11Q9Y3B7 192 aaKnown RBP16.57■□□□□ 0.24
SHH-201ENST00000297261 PSMD14O00487 310 aa16.57■□□□□ 0.24
SHH-201ENST00000297261 ERVK-24P63145 666 aa16.57■□□□□ 0.24
SHH-201ENST00000297261 LRRC63Q05C16 580 aa16.57■□□□□ 0.24
SHH-201ENST00000297261 AMIGO3Q86WK7 504 aa16.57■□□□□ 0.24
SHH-201ENST00000297261 FBXO41Q8TF61 875 aa16.57■□□□□ 0.24
SHH-201ENST00000297261 HPS3Q969F9 1004 aa16.57■□□□□ 0.24
SHH-201ENST00000297261 SPZ1Q9BXG8 430 aa16.57■□□□□ 0.24
SHH-201ENST00000297261 CLEC11AQ9Y240 323 aa16.57■□□□□ 0.24
SHH-201ENST00000297261 NOL3O60936 208 aaKnown RBP16.56■□□□□ 0.24
SHH-201ENST00000297261 CA4P22748 312 aa16.56■□□□□ 0.24
SHH-201ENST00000297261 NFIAQ12857 509 aa16.56■□□□□ 0.24
SHH-201ENST00000297261 ADGRF4Q8IZF3 695 aa16.56■□□□□ 0.24
SHH-201ENST00000297261 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.56■□□□□ 0.24
SHH-201ENST00000297261 F5H6K3 240 aa16.56■□□□□ 0.24
SHH-201ENST00000297261 FCER1AP12319 257 aa16.56■□□□□ 0.24
SHH-201ENST00000297261 KLRC3Q07444 240 aa16.56■□□□□ 0.24
SHH-201ENST00000297261 LRRC23Q53EV4 343 aaPredicted RBP16.56■□□□□ 0.24
SHH-201ENST00000297261 GRK7Q8WTQ7 553 aa16.56■□□□□ 0.24
SHH-201ENST00000297261 LARSQ9P2J5 1176 aaKnown RBP16.56■□□□□ 0.24
SHH-201ENST00000297261 STK17AQ9UEE5 414 aa16.56■□□□□ 0.24
SHH-201ENST00000297261 DUSP10Q9Y6W6 482 aa16.56■□□□□ 0.24
SHH-201ENST00000297261 USP17L15C9J2P7 530 aa16.56■□□□□ 0.24
SHH-201ENST00000297261 USP17L13C9JLJ4 530 aa16.56■□□□□ 0.24
SHH-201ENST00000297261 USP17L11C9JVI0 530 aa16.56■□□□□ 0.24
SHH-201ENST00000297261 USP17L18D6R9N7 530 aa16.56■□□□□ 0.24
SHH-201ENST00000297261 USP17L22D6RA61 530 aa16.56■□□□□ 0.24
SHH-201ENST00000297261 USP17L17D6RBQ6 530 aa16.56■□□□□ 0.24
SHH-201ENST00000297261 USP17L19D6RCP7 530 aa16.56■□□□□ 0.24
SHH-201ENST00000297261 USP17L20D6RJB6 530 aa16.56■□□□□ 0.24
SHH-201ENST00000297261 USP17L24Q0WX57 530 aa16.56■□□□□ 0.24
SHH-201ENST00000297261 WDR93Q6P2C0 686 aa16.56■□□□□ 0.24
SHH-201ENST00000297261 USP17L6PQ6QN14 398 aa16.56■□□□□ 0.24
SHH-201ENST00000297261 HOOK2Q96ED9 719 aa16.56■□□□□ 0.24
SHH-201ENST00000297261 FOSP01100 380 aaPredicted RBP16.55■□□□□ 0.24
SHH-201ENST00000297261 ITIH3Q06033 890 aa16.55■□□□□ 0.24
SHH-201ENST00000297261 ZC3H18Q86VM9 953 aaKnown RBP16.55■□□□□ 0.24
SHH-201ENST00000297261 LBHD1Q9BQE6 289 aaPredicted RBP16.55■□□□□ 0.24
SHH-201ENST00000297261 CCPG1Q9ULG6 757 aa16.55■□□□□ 0.24
SHH-201ENST00000297261 GAS7O60861 476 aa16.55■□□□□ 0.24
SHH-201ENST00000297261 ATP2C1P98194 919 aaPredicted RBP16.55■□□□□ 0.24
SHH-201ENST00000297261 DCAF15Q66K64 600 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms