RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 PCDHA12Q9UN75 941 aa8.44□□□□□ -1.06
USP3-201ENST00000268049 AKR1B15C9JRZ8 316 aaPredicted RBP8.44□□□□□ -1.06
USP3-201ENST00000268049 HNRNPDLO14979 420 aaKnown RBP8.44□□□□□ -1.06
USP3-201ENST00000268049 STRNO43815 780 aa8.44□□□□□ -1.06
USP3-201ENST00000268049 CDK8P49336 464 aa8.44□□□□□ -1.06
USP3-201ENST00000268049 ELAVL2Q12926 359 aaKnown RBP8.44□□□□□ -1.06
USP3-201ENST00000268049 SEL1L2Q5TEA6 688 aa8.44□□□□□ -1.06
USP3-201ENST00000268049 LRRC31Q6UY01 552 aa8.44□□□□□ -1.06
USP3-201ENST00000268049 CCDC25Q86WR0 208 aa8.44□□□□□ -1.06
USP3-201ENST00000268049 SCN4BQ8IWT1 228 aa8.44□□□□□ -1.06
USP3-201ENST00000268049 MCPH1Q8NEM0 835 aa8.44□□□□□ -1.06
USP3-201ENST00000268049 GDAP1Q8TB36 358 aa8.44□□□□□ -1.06
USP3-201ENST00000268049 DYNLL2Q96FJ2 89 aa8.44□□□□□ -1.06
USP3-201ENST00000268049 PFDN4Q9NQP4 134 aa8.44□□□□□ -1.06
USP3-201ENST00000268049 ZC3H4Q9UPT8 1303 aaKnown RBP8.44□□□□□ -1.06
USP3-201ENST00000268049 EFCAB8A8MWE9 144 aa8.44□□□□□ -1.06
USP3-201ENST00000268049 NDUFV1P49821 464 aa8.44□□□□□ -1.06
USP3-201ENST00000268049 IRX4P78413 519 aa8.44□□□□□ -1.06
USP3-201ENST00000268049 KCNH2Q12809 1159 aa8.44□□□□□ -1.06
USP3-201ENST00000268049 KCTD1Q719H9 257 aa8.44□□□□□ -1.06
USP3-201ENST00000268049 ZNF467Q7Z7K2 595 aaPredicted RBP8.44□□□□□ -1.06
USP3-201ENST00000268049 NEK8Q86SG6 692 aa8.44□□□□□ -1.06
USP3-201ENST00000268049 SIRT2Q8IXJ6 389 aa8.44□□□□□ -1.06
USP3-201ENST00000268049 FAM178BQ8IXR5 827 aa8.44□□□□□ -1.06
USP3-201ENST00000268049 SKA2Q8WVK7 121 aaPredicted RBP8.44□□□□□ -1.06
USP3-201ENST00000268049 DHX58Q96C10 678 aa8.44□□□□□ -1.06
USP3-201ENST00000268049 CDCA5Q96FF9 252 aa8.44□□□□□ -1.06
USP3-201ENST00000268049 RNPC3Q96LT9 517 aaKnown RBP8.44□□□□□ -1.06
USP3-201ENST00000268049 MTG1Q9BT17 334 aaPredicted RBP8.44□□□□□ -1.06
USP3-201ENST00000268049 GLIS2Q9BZE0 524 aaPredicted RBP8.44□□□□□ -1.06
USP3-201ENST00000268049 SENP6Q9GZR1 1112 aaPredicted RBP8.44□□□□□ -1.06
USP3-201ENST00000268049 OSBPL3Q9H4L5 887 aa8.44□□□□□ -1.06
USP3-201ENST00000268049 YY1AP1Q9H869 796 aa8.44□□□□□ -1.06
USP3-201ENST00000268049 IMPACTQ9P2X3 320 aa8.44□□□□□ -1.06
USP3-201ENST00000268049 PDHXO00330 501 aa8.44□□□□□ -1.06
USP3-201ENST00000268049 MGEA5O60502 916 aa8.44□□□□□ -1.06
USP3-201ENST00000268049 EGFRP00533 1210 aa8.44□□□□□ -1.06
USP3-201ENST00000268049 KIF23Q02241 960 aaPredicted RBP8.44□□□□□ -1.06
USP3-201ENST00000268049 ZNF174Q15697 407 aa8.44□□□□□ -1.06
USP3-201ENST00000268049 POMGNT1Q8WZA1 660 aa8.44□□□□□ -1.06
USP3-201ENST00000268049 FLT1P17948 1338 aa8.43□□□□□ -1.06
USP3-201ENST00000268049 COL3A1P02461 1466 aaPredicted RBP8.43□□□□□ -1.06
USP3-201ENST00000268049 PARNO95453 639 aaKnown RBP8.43□□□□□ -1.06
USP3-201ENST00000268049 PIK3CAP42336 1068 aa8.43□□□□□ -1.06
USP3-201ENST00000268049 CALCOCO2Q13137 446 aa8.43□□□□□ -1.06
USP3-201ENST00000268049 GEN1Q17RS7 908 aa8.43□□□□□ -1.06
USP3-201ENST00000268049 C7orf61Q8IZ16 206 aa8.43□□□□□ -1.06
USP3-201ENST00000268049 APPL2Q8NEU8 664 aa8.43□□□□□ -1.06
USP3-201ENST00000268049 POLLQ9UGP5 575 aa8.43□□□□□ -1.06
USP3-201ENST00000268049 SCOCQ9UIL1 159 aa8.43□□□□□ -1.06
USP3-201ENST00000268049 ITM2BQ9Y287 266 aa8.43□□□□□ -1.06
USP3-201ENST00000268049 MED23Q9ULK4 1368 aa8.43□□□□□ -1.06
USP3-201ENST00000268049 A6NJR5 290 aa8.43□□□□□ -1.06
USP3-201ENST00000268049 ERCC5P28715 1186 aaPredicted RBP8.43□□□□□ -1.06
USP3-201ENST00000268049 SATB1Q01826 763 aa8.43□□□□□ -1.06
USP3-201ENST00000268049 MAPK6Q16659 721 aa8.43□□□□□ -1.06
USP3-201ENST00000268049 PRAMEF18Q5VWM3 479 aa8.43□□□□□ -1.06
USP3-201ENST00000268049 CXorf38Q8TB03 319 aa8.43□□□□□ -1.06
USP3-201ENST00000268049 Q9H521 79 aa8.43□□□□□ -1.06
USP3-201ENST00000268049 UBN1Q9NPG3 1134 aa8.43□□□□□ -1.06
USP3-201ENST00000268049 AHDC1Q5TGY3 1603 aaPredicted RBP8.43□□□□□ -1.06
USP3-201ENST00000268049 SPDYE2BA6NHP3 402 aa8.43□□□□□ -1.06
USP3-201ENST00000268049 CAND2O75155 1236 aa8.43□□□□□ -1.06
USP3-201ENST00000268049 SPDYE6P0CI01 402 aa8.43□□□□□ -1.06
USP3-201ENST00000268049 GOLGA8HP0CJ92 632 aa8.43□□□□□ -1.06
USP3-201ENST00000268049 DYNC1I2Q13409 638 aaKnown RBP8.43□□□□□ -1.06
USP3-201ENST00000268049 RAPGEF1Q13905 1077 aa8.43□□□□□ -1.06
USP3-201ENST00000268049 TMC7Q7Z402 723 aa8.43□□□□□ -1.06
USP3-201ENST00000268049 ANKRD23Q86SG2 305 aa8.43□□□□□ -1.06
USP3-201ENST00000268049 SDCCAG8Q86SQ7 713 aaPredicted RBP8.43□□□□□ -1.06
USP3-201ENST00000268049 NSUN7Q8NE18 718 aaKnown RBP8.43□□□□□ -1.06
USP3-201ENST00000268049 NEK9Q8TD19 979 aa8.43□□□□□ -1.06
USP3-201ENST00000268049 ACCSQ96QU6 501 aa8.43□□□□□ -1.06
USP3-201ENST00000268049 KIF2CQ99661 725 aa8.43□□□□□ -1.06
USP3-201ENST00000268049 GSPT1P15170 499 aaKnown RBP8.43□□□□□ -1.06
USP3-201ENST00000268049 PTH1RQ03431 593 aa8.43□□□□□ -1.06
USP3-201ENST00000268049 CFAP157Q5JU67 520 aa8.43□□□□□ -1.06
USP3-201ENST00000268049 VPS50Q96JG6 964 aa8.43□□□□□ -1.06
USP3-201ENST00000268049 MXD3Q9BW11 206 aa8.43□□□□□ -1.06
USP3-201ENST00000268049 TMEM206Q9H813 350 aa8.43□□□□□ -1.06
USP3-201ENST00000268049 NFAT5O94916 1531 aa8.42□□□□□ -1.06
USP3-201ENST00000268049 ALDH1A2O94788 518 aa8.42□□□□□ -1.06
USP3-201ENST00000268049 GTF2H3Q13889 308 aa8.42□□□□□ -1.06
USP3-201ENST00000268049 BTG3Q14201 252 aaPredicted RBP8.42□□□□□ -1.06
USP3-201ENST00000268049 FBXO33Q7Z6M2 555 aa8.42□□□□□ -1.06
USP3-201ENST00000268049 CABP7Q86V35 215 aa8.42□□□□□ -1.06
USP3-201ENST00000268049 AFG1LQ8WV93 481 aa8.42□□□□□ -1.06
USP3-201ENST00000268049 STRBPQ96SI9 672 aaKnown RBP8.42□□□□□ -1.06
USP3-201ENST00000268049 PDE11AQ9HCR9 933 aa8.42□□□□□ -1.06
USP3-201ENST00000268049 XPNPEP3Q9NQH7 507 aa8.42□□□□□ -1.06
USP3-201ENST00000268049 DAGLAQ9Y4D2 1042 aa8.42□□□□□ -1.06
USP3-201ENST00000268049 TMEM110-MUSTN1A8MSY1 372 aa8.42□□□□□ -1.06
USP3-201ENST00000268049 RNF40O75150 1001 aa8.42□□□□□ -1.06
USP3-201ENST00000268049 ITGA4P13612 1032 aa8.42□□□□□ -1.06
USP3-201ENST00000268049 TM4SF1P30408 202 aa8.42□□□□□ -1.06
USP3-201ENST00000268049 CXCL9Q07325 125 aa8.42□□□□□ -1.06
USP3-201ENST00000268049 RAD51AP2Q09MP3 1159 aa8.42□□□□□ -1.06
USP3-201ENST00000268049 MTMR1Q13613 665 aa8.42□□□□□ -1.06
USP3-201ENST00000268049 ATL3Q6DD88 541 aa8.42□□□□□ -1.06
USP3-201ENST00000268049 ITIH5Q86UX2 942 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms