RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 NEUROG2Q9H2A3 272 aa13.76□□□□□ -0.21
LIG1-201ENST00000263274 KCNQ5Q9NR82 932 aa13.76□□□□□ -0.21
LIG1-201ENST00000263274 EVI5O60447 810 aa13.75□□□□□ -0.21
LIG1-201ENST00000263274 NT5C2P49902 561 aa13.75□□□□□ -0.21
LIG1-201ENST00000263274 CDR1P51861 262 aa13.75□□□□□ -0.21
LIG1-201ENST00000263274 PTGISQ16647 500 aa13.75□□□□□ -0.21
LIG1-201ENST00000263274 HS2ST1Q7LGA3 356 aa13.75□□□□□ -0.21
LIG1-201ENST00000263274 CERS5Q8N5B7 392 aa13.75□□□□□ -0.21
LIG1-201ENST00000263274 MDM1Q8TC05 714 aa13.75□□□□□ -0.21
LIG1-201ENST00000263274 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.75□□□□□ -0.212e-7■■■■□ 20.8
LIG1-201ENST00000263274 DNAJC12Q9UKB3 198 aa13.75□□□□□ -0.21
LIG1-201ENST00000263274 HMGB1P1B2RPK0 211 aaPredicted RBP13.75□□□□□ -0.21
LIG1-201ENST00000263274 EXOC3O60645 756 aa13.75□□□□□ -0.21
LIG1-201ENST00000263274 IL1R1P14778 569 aa13.75□□□□□ -0.21
LIG1-201ENST00000263274 HNRNPH1P31943 449 aaKnown RBP13.75□□□□□ -0.21
LIG1-201ENST00000263274 SLCO1A2P46721 670 aa13.75□□□□□ -0.21
LIG1-201ENST00000263274 ZNF746Q6NUN9 644 aaPredicted RBP13.75□□□□□ -0.21
LIG1-201ENST00000263274 GLG1Q92896 1179 aa13.75□□□□□ -0.21
LIG1-201ENST00000263274 AMNQ9BXJ7 453 aa13.75□□□□□ -0.21
LIG1-201ENST00000263274 CTTNBP2NLQ9P2B4 639 aa13.75□□□□□ -0.21
LIG1-201ENST00000263274 SNX24Q9Y343 169 aa13.75□□□□□ -0.21
LIG1-201ENST00000263274 FAM86B1E9PN63 330 aa13.75□□□□□ -0.21
LIG1-201ENST00000263274 F5H6K3 240 aa13.75□□□□□ -0.21
LIG1-201ENST00000263274 MEFVO15553 781 aaPredicted RBP13.75□□□□□ -0.21
LIG1-201ENST00000263274 BBOX1O75936 387 aa13.75□□□□□ -0.21
LIG1-201ENST00000263274 FAM86B2P0C5J1 330 aa13.75□□□□□ -0.21
LIG1-201ENST00000263274 SLC12A3P55017 1021 aa13.75□□□□□ -0.21
LIG1-201ENST00000263274 KLRC3Q07444 240 aa13.75□□□□□ -0.21
LIG1-201ENST00000263274 DRAP1Q14919 205 aaPredicted RBP13.75□□□□□ -0.21
LIG1-201ENST00000263274 RUFY4Q6ZNE9 571 aa13.75□□□□□ -0.21
LIG1-201ENST00000263274 MYCBPAPQ8TBZ2 947 aa13.75□□□□□ -0.21
LIG1-201ENST00000263274 ISCUQ9H1K1 167 aa13.75□□□□□ -0.21
LIG1-201ENST00000263274 SUFUQ9UMX1 484 aa13.75□□□□□ -0.21
LIG1-201ENST00000263274 BZW2Q9Y6E2 419 aaKnown RBP13.75□□□□□ -0.21
LIG1-201ENST00000263274 RBAK-RBAKDNI3L0D1 243 aa13.74□□□□□ -0.21
LIG1-201ENST00000263274 HGSO14964 777 aaPredicted RBP13.74□□□□□ -0.21
LIG1-201ENST00000263274 KDM7AQ6ZMT4 941 aa13.74□□□□□ -0.21
LIG1-201ENST00000263274 ZNF572Q7Z3I7 529 aaPredicted RBP13.74□□□□□ -0.21
LIG1-201ENST00000263274 PIK3R5Q8WYR1 880 aa13.74□□□□□ -0.21
LIG1-201ENST00000263274 DDX3XO00571 662 aaKnown RBP eCLIP13.74□□□□□ -0.212e-12■■■□□ 16.8
LIG1-201ENST00000263274 BUB1BO60566 1050 aaPredicted RBP13.74□□□□□ -0.21
LIG1-201ENST00000263274 RDXP35241 583 aaKnown RBP13.74□□□□□ -0.21
LIG1-201ENST00000263274 SKOR1P84550 965 aa13.74□□□□□ -0.21
LIG1-201ENST00000263274 EDRF1Q3B7T1 1238 aa13.74□□□□□ -0.21
LIG1-201ENST00000263274 FRMD5Q7Z6J6 570 aa13.74□□□□□ -0.21
LIG1-201ENST00000263274 FAM178BQ8IXR5 827 aa13.74□□□□□ -0.21
LIG1-201ENST00000263274 SLC35G2Q8TBE7 412 aa13.74□□□□□ -0.21
LIG1-201ENST00000263274 EIF2AK1Q9BQI3 630 aaKnown RBP13.74□□□□□ -0.21
LIG1-201ENST00000263274 NR2E1Q9Y466 385 aa13.74□□□□□ -0.21
LIG1-201ENST00000263274 IRS2Q9Y4H2 1338 aa13.74□□□□□ -0.21
LIG1-201ENST00000263274 PHF20L1A8MW92 1017 aa13.74□□□□□ -0.21
LIG1-201ENST00000263274 PPEF1O14829 653 aaPredicted RBP13.74□□□□□ -0.21
LIG1-201ENST00000263274 AADACL2Q6P093 401 aa13.74□□□□□ -0.21
LIG1-201ENST00000263274 PPP4R3CPQ6ZMV5 832 aa13.74□□□□□ -0.21
LIG1-201ENST00000263274 CEP57Q86XR8 500 aa13.74□□□□□ -0.21
LIG1-201ENST00000263274 RUBCNQ92622 972 aa13.74□□□□□ -0.21
LIG1-201ENST00000263274 HOOK2Q96ED9 719 aa13.74□□□□□ -0.21
LIG1-201ENST00000263274 DYDC2Q96IM9 177 aa13.74□□□□□ -0.21
LIG1-201ENST00000263274 NAP1L4Q99733 375 aaKnown RBP13.74□□□□□ -0.21
LIG1-201ENST00000263274 SWAP70Q9UH65 585 aa13.74□□□□□ -0.21
LIG1-201ENST00000263274 FRMD4BQ9Y2L6 1034 aa13.74□□□□□ -0.21
LIG1-201ENST00000263274 PCDHA2Q9Y5H9 948 aa13.74□□□□□ -0.21
LIG1-201ENST00000263274 CCDC88AQ3V6T2 1871 aa13.73□□□□□ -0.21
LIG1-201ENST00000263274 DCDC2CA8MYV0 355 aa13.73□□□□□ -0.21
LIG1-201ENST00000263274 EML1O00423 815 aa13.73□□□□□ -0.21
LIG1-201ENST00000263274 ODR4Q5SWX8 454 aa13.73□□□□□ -0.21
LIG1-201ENST00000263274 METTL14Q9HCE5 456 aaKnown RBP13.73□□□□□ -0.21
LIG1-201ENST00000263274 TYW1Q9NV66 732 aaKnown RBP13.73□□□□□ -0.21
LIG1-201ENST00000263274 PTPN22Q9Y2R2 807 aa13.73□□□□□ -0.21
LIG1-201ENST00000263274 A6NNZ2 444 aa13.73□□□□□ -0.21
LIG1-201ENST00000263274 APBA3O96018 575 aa13.73□□□□□ -0.21
LIG1-201ENST00000263274 IFNAR2P48551 515 aa13.73□□□□□ -0.21
LIG1-201ENST00000263274 GABPAQ06546 454 aa13.73□□□□□ -0.21
LIG1-201ENST00000263274 TUBB8Q3ZCM7 444 aa13.73□□□□□ -0.21
LIG1-201ENST00000263274 PPP1R18Q6NYC8 613 aa13.73□□□□□ -0.21
LIG1-201ENST00000263274 SYCE1Q8N0S2 351 aa13.73□□□□□ -0.21
LIG1-201ENST00000263274 GOLGA6L10A0A0M3HER8 536 aa13.72□□□□□ -0.21
LIG1-201ENST00000263274 DDTLA6NHG4 134 aaPredicted RBP13.72□□□□□ -0.21
LIG1-201ENST00000263274 CUL1Q13616 776 aa13.72□□□□□ -0.21
LIG1-201ENST00000263274 MESDQ14696 234 aa13.72□□□□□ -0.21
LIG1-201ENST00000263274 SYT2Q8N9I0 419 aaPredicted RBP13.72□□□□□ -0.21
LIG1-201ENST00000263274 SLC35C1Q96A29 364 aa13.72□□□□□ -0.21
LIG1-201ENST00000263274 SCLT1Q96NL6 688 aa13.72□□□□□ -0.21
LIG1-201ENST00000263274 JPH2Q9BR39 696 aaPredicted RBP13.72□□□□□ -0.21
LIG1-201ENST00000263274 TMBIM4Q9HC24 238 aa13.72□□□□□ -0.21
LIG1-201ENST00000263274 PPP1R9AQ9ULJ8 1098 aa13.72□□□□□ -0.21
LIG1-201ENST00000263274 ABCA3Q99758 1704 aa13.72□□□□□ -0.21
LIG1-201ENST00000263274 PDXKO00764 312 aa13.72□□□□□ -0.21
LIG1-201ENST00000263274 MEIS2O14770 477 aa13.72□□□□□ -0.21
LIG1-201ENST00000263274 MSH4O15457 936 aa13.72□□□□□ -0.21
LIG1-201ENST00000263274 SNHG28P0DPA3 235 aa13.72□□□□□ -0.21
LIG1-201ENST00000263274 FERP16591 822 aa13.72□□□□□ -0.21
LIG1-201ENST00000263274 RPA1P27694 616 aa13.72□□□□□ -0.21
LIG1-201ENST00000263274 PSMC2P35998 433 aaKnown RBP13.72□□□□□ -0.21
LIG1-201ENST00000263274 CLK2P49760 499 aaKnown RBP13.72□□□□□ -0.21
LIG1-201ENST00000263274 LRCH2Q5VUJ6 765 aa13.72□□□□□ -0.21
LIG1-201ENST00000263274 FMO2Q99518 471 aa13.72□□□□□ -0.21
LIG1-201ENST00000263274 P2RX7Q99572 595 aaKnown RBP13.72□□□□□ -0.21
LIG1-201ENST00000263274 DAAM1Q9Y4D1 1078 aa13.72□□□□□ -0.21
LIG1-201ENST00000263274 GMNCA6NCL1 334 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms