RNA–Protein interactions for RNA: ENST00000235958.4

HMGCL-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA lyase, humanhuman

TSL 5

Gene HMGCL, Length 1,101 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCL-201ENST00000235958 CTAGE1Q96RT6 745 aa11.32□□□□□ -0.6
HMGCL-201ENST00000235958 PYM1Q9BRP8 204 aaKnown RBP11.32□□□□□ -0.6
HMGCL-201ENST00000235958 CUEDC2Q9H467 287 aa11.32□□□□□ -0.6
HMGCL-201ENST00000235958 DHX33Q9H6R0 707 aaKnown RBP11.32□□□□□ -0.6
HMGCL-201ENST00000235958 POLD4Q9HCU8 107 aa11.32□□□□□ -0.6
HMGCL-201ENST00000235958 TRMT13Q9NUP7 481 aaKnown RBP11.32□□□□□ -0.6
HMGCL-201ENST00000235958 USP25Q9UHP3 1055 aa11.32□□□□□ -0.6
HMGCL-201ENST00000235958 TUBE1Q9UJT0 475 aa11.32□□□□□ -0.6
HMGCL-201ENST00000235958 PPME1Q9Y570 386 aa11.32□□□□□ -0.6
HMGCL-201ENST00000235958 PCDHA2Q9Y5H9 948 aa11.32□□□□□ -0.6
HMGCL-201ENST00000235958 IGKV6-21A0A0C4DH24 114 aa11.31□□□□□ -0.6
HMGCL-201ENST00000235958 DCDC2CA8MYV0 355 aa11.31□□□□□ -0.6
HMGCL-201ENST00000235958 ACTN4O43707 911 aaKnown RBP11.31□□□□□ -0.6
HMGCL-201ENST00000235958 PQBP1O60828 265 aaKnown RBP11.31□□□□□ -0.6
HMGCL-201ENST00000235958 NR1I2O75469 434 aa11.31□□□□□ -0.6
HMGCL-201ENST00000235958 DGAT1O75907 488 aa11.31□□□□□ -0.6
HMGCL-201ENST00000235958 C22orf31O95567 290 aa11.31□□□□□ -0.6
HMGCL-201ENST00000235958 CD4P01730 458 aa11.31□□□□□ -0.6
HMGCL-201ENST00000235958 CYP2C9P11712 490 aa11.31□□□□□ -0.6
HMGCL-201ENST00000235958 RFC5P40937 340 aa11.31□□□□□ -0.6
HMGCL-201ENST00000235958 POLGP54098 1239 aaPredicted RBP11.31□□□□□ -0.6
HMGCL-201ENST00000235958 RTP1P59025 263 aa11.31□□□□□ -0.6
HMGCL-201ENST00000235958 MKRN4PQ13434 485 aaPredicted RBP11.31□□□□□ -0.6
HMGCL-201ENST00000235958 TRIM60Q495X7 471 aa11.31□□□□□ -0.6
HMGCL-201ENST00000235958 RUFY4Q6ZNE9 571 aa11.31□□□□□ -0.6
HMGCL-201ENST00000235958 MAEAQ7L5Y9 396 aa11.31□□□□□ -0.6
HMGCL-201ENST00000235958 SERINC5Q86VE9 423 aa11.31□□□□□ -0.6
HMGCL-201ENST00000235958 FAM126BQ8IXS8 530 aa11.31□□□□□ -0.6
HMGCL-201ENST00000235958 KIAA0319LQ8IZA0 1049 aa11.31□□□□□ -0.6
HMGCL-201ENST00000235958 LRRC71Q8N4P6 559 aa11.31□□□□□ -0.6
HMGCL-201ENST00000235958 RETREG2Q8NC44 543 aa11.31□□□□□ -0.6
HMGCL-201ENST00000235958 SLC7A3Q8WY07 619 aa11.31□□□□□ -0.6
HMGCL-201ENST00000235958 TOX2Q96NM4 488 aa11.31□□□□□ -0.6
HMGCL-201ENST00000235958 MTRQ99707 1265 aa11.31□□□□□ -0.6
HMGCL-201ENST00000235958 KBTBD4Q9NVX7 518 aa11.31□□□□□ -0.6
HMGCL-201ENST00000235958 ATP11BQ9Y2G3 1177 aa11.31□□□□□ -0.6
HMGCL-201ENST00000235958 MROH7Q68CQ1 1323 aa11.31□□□□□ -0.6
HMGCL-201ENST00000235958 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.3□□□□□ -0.6
HMGCL-201ENST00000235958 NPHP3-ACAD11A0A0J9YXS1 232 aa11.3□□□□□ -0.6
HMGCL-201ENST00000235958 SMIM35A0A1B0GVV1 85 aa11.3□□□□□ -0.6
HMGCL-201ENST00000235958 MYMKA6NI61 221 aa11.3□□□□□ -0.6
HMGCL-201ENST00000235958 USO1O60763 962 aaKnown RBP11.3□□□□□ -0.6
HMGCL-201ENST00000235958 TMOD1P28289 359 aa11.3□□□□□ -0.6
HMGCL-201ENST00000235958 AFMP43652 599 aa11.3□□□□□ -0.6
HMGCL-201ENST00000235958 DNM2P50570 870 aa11.3□□□□□ -0.6
HMGCL-201ENST00000235958 AMPD3Q01432 767 aa11.3□□□□□ -0.6
HMGCL-201ENST00000235958 RAD51AP2Q09MP3 1159 aa11.3□□□□□ -0.6
HMGCL-201ENST00000235958 FAAP100Q0VG06 881 aa11.3□□□□□ -0.6
HMGCL-201ENST00000235958 PTK7Q13308 1070 aa11.3□□□□□ -0.6
HMGCL-201ENST00000235958 DRP2Q13474 957 aa11.3□□□□□ -0.6
HMGCL-201ENST00000235958 KRBA2Q6ZNG9 492 aa11.3□□□□□ -0.6
HMGCL-201ENST00000235958 GPBP1Q86WP2 473 aa11.3□□□□□ -0.6
HMGCL-201ENST00000235958 CEP57L1Q8IYX8 460 aa11.3□□□□□ -0.6
HMGCL-201ENST00000235958 CNNM3Q8NE01 707 aa11.3□□□□□ -0.6
HMGCL-201ENST00000235958 DNAJB3Q8WWF6 145 aa11.3□□□□□ -0.6
HMGCL-201ENST00000235958 PRPF31Q8WWY3 499 aaKnown RBP11.3□□□□□ -0.6
HMGCL-201ENST00000235958 TMEM143Q96AN5 459 aa11.3□□□□□ -0.6
HMGCL-201ENST00000235958 PAGE5Q96GU1 130 aa11.3□□□□□ -0.6
HMGCL-201ENST00000235958 JPH2Q9BR39 696 aaPredicted RBP11.3□□□□□ -0.6
HMGCL-201ENST00000235958 RUSC1Q9BVN2 902 aa11.3□□□□□ -0.6
HMGCL-201ENST00000235958 XPNPEP1Q9NQW7 623 aa11.3□□□□□ -0.6
HMGCL-201ENST00000235958 BMP2KQ9NSY1 1161 aaPredicted RBP11.3□□□□□ -0.6
HMGCL-201ENST00000235958 NOD1Q9Y239 953 aa11.3□□□□□ -0.6
HMGCL-201ENST00000235958 LOXHD1Q8IVV2 1947 aa11.3□□□□□ -0.6
HMGCL-201ENST00000235958 MKI67P46013 3256 aaKnown RBP11.3□□□□□ -0.6
HMGCL-201ENST00000235958 SFI1A8K8P3 1242 aa11.29□□□□□ -0.6
HMGCL-201ENST00000235958 TLR3O15455 904 aaKnown RBP11.29□□□□□ -0.6
HMGCL-201ENST00000235958 ARL2P36404 184 aa11.29□□□□□ -0.6
HMGCL-201ENST00000235958 CLCN3P51790 818 aa11.29□□□□□ -0.6
HMGCL-201ENST00000235958 MDM2Q00987 491 aaPredicted RBP11.29□□□□□ -0.6
HMGCL-201ENST00000235958 GIT2Q14161 759 aa11.29□□□□□ -0.6
HMGCL-201ENST00000235958 EMC2Q15006 297 aa11.29□□□□□ -0.6
HMGCL-201ENST00000235958 IER5Q5VY09 327 aa11.29□□□□□ -0.6
HMGCL-201ENST00000235958 TAF2Q6P1X5 1199 aa11.29□□□□□ -0.6
HMGCL-201ENST00000235958 DYMQ7RTS9 669 aa11.29□□□□□ -0.6
HMGCL-201ENST00000235958 GRAMD1CQ8IYS0 662 aa11.29□□□□□ -0.6
HMGCL-201ENST00000235958 NME8Q8N427 588 aa11.29□□□□□ -0.6
HMGCL-201ENST00000235958 LINC01465Q8N7H1 131 aa11.29□□□□□ -0.6
HMGCL-201ENST00000235958 MCPH1Q8NEM0 835 aa11.29□□□□□ -0.6
HMGCL-201ENST00000235958 DDX12PQ92771 950 aa11.29□□□□□ -0.6
HMGCL-201ENST00000235958 WNT8BQ93098 351 aa11.29□□□□□ -0.6
HMGCL-201ENST00000235958 TIGD1Q96MW7 591 aa11.29□□□□□ -0.6
HMGCL-201ENST00000235958 C7orf25Q9BPX7 421 aa11.29□□□□□ -0.6
HMGCL-201ENST00000235958 FAM49AQ9H0Q0 323 aaPredicted RBP11.29□□□□□ -0.6
HMGCL-201ENST00000235958 ATP6V0A4Q9HBG4 840 aa11.29□□□□□ -0.6
HMGCL-201ENST00000235958 GPRC5CQ9NQ84 441 aa11.29□□□□□ -0.6
HMGCL-201ENST00000235958 DACT1Q9NYF0 836 aa11.29□□□□□ -0.6
HMGCL-201ENST00000235958 KCND2Q9NZV8 630 aa11.29□□□□□ -0.6
HMGCL-201ENST00000235958 SUCLA2Q9P2R7 463 aaPredicted RBP11.29□□□□□ -0.6
HMGCL-201ENST00000235958 MYH11P35749 1972 aa11.28□□□□□ -0.6
HMGCL-201ENST00000235958 GAS2O43903 313 aaKnown RBP11.28□□□□□ -0.6
HMGCL-201ENST00000235958 HIP1RO75146 1068 aa11.28□□□□□ -0.6
HMGCL-201ENST00000235958 KRT18P05783 430 aaKnown RBP11.28□□□□□ -0.6
HMGCL-201ENST00000235958 GUCY2CP25092 1073 aa11.28□□□□□ -0.6
HMGCL-201ENST00000235958 CASP1P29466 404 aa11.28□□□□□ -0.6
HMGCL-201ENST00000235958 THPOP40225 353 aa11.28□□□□□ -0.6
HMGCL-201ENST00000235958 TRIM71Q2Q1W2 868 aaKnown RBP11.28□□□□□ -0.6
HMGCL-201ENST00000235958 FAM102BQ5T8I3 360 aa11.28□□□□□ -0.6
HMGCL-201ENST00000235958 KANK3Q6NY19 840 aa11.28□□□□□ -0.6
HMGCL-201ENST00000235958 SH3RF1Q7Z6J0 888 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms