RNA–Protein interactions for RNA: ENST00000228251.8

YBX3-201, Transcript of Y-box binding protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene YBX3, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-201ENST00000228251 PKD2L1Q9P0L9 805 aa21■□□□□ 0.95
YBX3-201ENST00000228251 CCDC151A5D8V7 595 aa20.99■□□□□ 0.95
YBX3-201ENST00000228251 POTEB2H3BUK9 544 aa20.99■□□□□ 0.95
YBX3-201ENST00000228251 PSMC2P35998 433 aaKnown RBP20.99■□□□□ 0.95
YBX3-201ENST00000228251 QARSP47897 775 aaKnown RBP20.99■□□□□ 0.95
YBX3-201ENST00000228251 JAM2P57087 298 aa20.99■□□□□ 0.95
YBX3-201ENST00000228251 BMS1Q14692 1282 aaKnown RBP20.99■□□□□ 0.95
YBX3-201ENST00000228251 XRRA1Q6P2D8 792 aa20.99■□□□□ 0.95
YBX3-201ENST00000228251 STXBP4Q6ZWJ1 553 aa20.99■□□□□ 0.95
YBX3-201ENST00000228251 WRNIP1Q96S55 665 aa20.99■□□□□ 0.95
YBX3-201ENST00000228251 PNKPQ96T60 521 aa20.99■□□□□ 0.95
YBX3-201ENST00000228251 ZNF214Q9UL59 606 aaPredicted RBP20.99■□□□□ 0.95
YBX3-201ENST00000228251 PCDHB13Q9Y5F0 798 aa20.99■□□□□ 0.95
YBX3-201ENST00000228251 DOCK5Q9H7D0 1870 aa20.98■□□□□ 0.95
YBX3-201ENST00000228251 A0A0G2JMZ2 1700 aa20.98■□□□□ 0.95
YBX3-201ENST00000228251 ATP2A1O14983 1001 aa20.98■□□□□ 0.95
YBX3-201ENST00000228251 ATP9AO75110 1047 aa20.98■□□□□ 0.95
YBX3-201ENST00000228251 TBC1D8O95759 1140 aa20.98■□□□□ 0.95
YBX3-201ENST00000228251 CCNE2O96020 404 aa20.98■□□□□ 0.95
YBX3-201ENST00000228251 DSG3P32926 999 aa20.98■□□□□ 0.95
YBX3-201ENST00000228251 PRKCIP41743 596 aa20.98■□□□□ 0.95
YBX3-201ENST00000228251 EPS15P42566 896 aa20.98■□□□□ 0.95
YBX3-201ENST00000228251 MYBPC2Q14324 1141 aa20.98■□□□□ 0.95
YBX3-201ENST00000228251 BRD3Q15059 726 aa20.98■□□□□ 0.95
YBX3-201ENST00000228251 SLC18A3Q16572 532 aa20.98■□□□□ 0.95
YBX3-201ENST00000228251 C4orf19Q8IY42 314 aa20.98■□□□□ 0.95
YBX3-201ENST00000228251 FAM186BQ8IYM0 893 aa20.98■□□□□ 0.95
YBX3-201ENST00000228251 KLRG1Q96E93 195 aa20.98■□□□□ 0.95
YBX3-201ENST00000228251 GBP3Q9H0R5 595 aa20.98■□□□□ 0.95
YBX3-201ENST00000228251 RNF146Q9NTX7 359 aa20.98■□□□□ 0.95
YBX3-201ENST00000228251 AJAP1Q9UKB5 411 aaPredicted RBP20.98■□□□□ 0.95
YBX3-201ENST00000228251 NENFQ9UMX5 172 aa20.98■□□□□ 0.95
YBX3-201ENST00000228251 JRKLQ9Y4A0 524 aa20.98■□□□□ 0.95
YBX3-201ENST00000228251 TACC1O75410 805 aa20.97■□□□□ 0.95
YBX3-201ENST00000228251 SEC31AO94979 1220 aaKnown RBP20.97■□□□□ 0.95
YBX3-201ENST00000228251 MOCS3O95396 460 aa20.97■□□□□ 0.95
YBX3-201ENST00000228251 PRLRP16471 622 aa20.97■□□□□ 0.95
YBX3-201ENST00000228251 RAPGEF1Q13905 1077 aa20.97■□□□□ 0.95
YBX3-201ENST00000228251 UGCGQ16739 394 aa20.97■□□□□ 0.95
YBX3-201ENST00000228251 TDRD12Q587J7 1177 aaKnown RBP20.97■□□□□ 0.95
YBX3-201ENST00000228251 NOL9Q5SY16 702 aaKnown RBP20.97■□□□□ 0.95
YBX3-201ENST00000228251 GBP6Q6ZN66 633 aa20.97■□□□□ 0.95
YBX3-201ENST00000228251 ZNF572Q7Z3I7 529 aaPredicted RBP20.97■□□□□ 0.95
YBX3-201ENST00000228251 VSIG10LQ86VR7 867 aa20.97■□□□□ 0.95
YBX3-201ENST00000228251 KRT222Q8N1A0 295 aa20.97■□□□□ 0.95
YBX3-201ENST00000228251 RBM46Q8TBY0 533 aaKnown RBP20.97■□□□□ 0.95
YBX3-201ENST00000228251 HNRNPLLQ8WVV9 542 aaKnown RBP20.97■□□□□ 0.95
YBX3-201ENST00000228251 MMS19Q96T76 1030 aa20.97■□□□□ 0.95
YBX3-201ENST00000228251 GPRC5DQ9NZD1 345 aa20.97■□□□□ 0.95
YBX3-201ENST00000228251 A0A087X0T9 212 aa20.97■□□□□ 0.95
YBX3-201ENST00000228251 C19orf81C9J6K1 198 aa20.97■□□□□ 0.95
YBX3-201ENST00000228251 SRGAP2O75044 1071 aa20.97■□□□□ 0.95
YBX3-201ENST00000228251 FAM228BP0C875 321 aa20.97■□□□□ 0.95
YBX3-201ENST00000228251 R3HDM1Q15032 1099 aaKnown RBP20.97■□□□□ 0.95
YBX3-201ENST00000228251 ASIC2Q16515 512 aa20.97■□□□□ 0.95
YBX3-201ENST00000228251 DCAF17Q5H9S7 520 aaPredicted RBP20.97■□□□□ 0.95
YBX3-201ENST00000228251 PRAMEF18Q5VWM3 479 aa20.97■□□□□ 0.95
YBX3-201ENST00000228251 RNF10Q8N5U6 811 aaKnown RBP20.97■□□□□ 0.95
YBX3-201ENST00000228251 FAM133AQ8N9E0 248 aa20.97■□□□□ 0.95
YBX3-201ENST00000228251 GOLGA5Q8TBA6 731 aa20.97■□□□□ 0.95
YBX3-201ENST00000228251 ST6GALNAC4Q9H4F1 302 aa20.97■□□□□ 0.95
YBX3-201ENST00000228251 SNX12Q9UMY4 172 aa20.97■□□□□ 0.95
YBX3-201ENST00000228251 OTOFQ9HC10 1997 aa20.96■□□□□ 0.95
YBX3-201ENST00000228251 ALCAMQ13740 583 aa20.96■□□□□ 0.95
YBX3-201ENST00000228251 BAATQ14032 418 aaPredicted RBP20.96■□□□□ 0.95
YBX3-201ENST00000228251 HS2ST1Q7LGA3 356 aa20.96■□□□□ 0.95
YBX3-201ENST00000228251 C12orf56Q8IXR9 622 aa20.96■□□□□ 0.95
YBX3-201ENST00000228251 TXLNBQ8N3L3 684 aa20.96■□□□□ 0.95
YBX3-201ENST00000228251 NLGN2Q8NFZ4 835 aa20.96■□□□□ 0.95
YBX3-201ENST00000228251 UPF1Q92900 1129 aaKnown RBP eCLIP20.96■□□□□ 0.95
YBX3-201ENST00000228251 SENP7Q9BQF6 1050 aa20.96■□□□□ 0.95
YBX3-201ENST00000228251 PICK1Q9NRD5 415 aa20.96■□□□□ 0.95
YBX3-201ENST00000228251 FZD1Q9UP38 647 aa20.96■□□□□ 0.95
YBX3-201ENST00000228251 PPP2R3BQ9Y5P8 575 aa20.96■□□□□ 0.95
YBX3-201ENST00000228251 PDE2AO00408 941 aaPredicted RBP20.95■□□□□ 0.94
YBX3-201ENST00000228251 SASH3O75995 380 aa20.95■□□□□ 0.94
YBX3-201ENST00000228251 PLA2G4AP47712 749 aa20.95■□□□□ 0.94
YBX3-201ENST00000228251 JAK3P52333 1124 aa20.95■□□□□ 0.94
YBX3-201ENST00000228251 HIRAP54198 1017 aaPredicted RBP20.95■□□□□ 0.94
YBX3-201ENST00000228251 HMGCS2P54868 508 aa20.95■□□□□ 0.94
YBX3-201ENST00000228251 MCCD1P59942 119 aaPredicted RBP20.95■□□□□ 0.94
YBX3-201ENST00000228251 KLHL30Q0D2K2 578 aa20.95■□□□□ 0.94
YBX3-201ENST00000228251 PPP2R5AQ15172 486 aa20.95■□□□□ 0.94
YBX3-201ENST00000228251 RDM1Q8NG50 284 aa20.95■□□□□ 0.94
YBX3-201ENST00000228251 OLIG1Q8TAK6 271 aa20.95■□□□□ 0.94
YBX3-201ENST00000228251 RPGRIP1Q96KN7 1286 aa20.95■□□□□ 0.94
YBX3-201ENST00000228251 INPP4AQ96PE3 977 aaPredicted RBP20.95■□□□□ 0.94
YBX3-201ENST00000228251 TIPINQ9BVW5 301 aa20.95■□□□□ 0.94
YBX3-201ENST00000228251 UBXN6Q9BZV1 441 aa20.95■□□□□ 0.94
YBX3-201ENST00000228251 GCNT4Q9P109 453 aa20.95■□□□□ 0.94
YBX3-201ENST00000228251 ATP8B3O60423 1300 aa20.95■□□□□ 0.94
YBX3-201ENST00000228251 MYCLP12524 364 aaPredicted RBP20.95■□□□□ 0.94
YBX3-201ENST00000228251 PLS3P13797 630 aa20.95■□□□□ 0.94
YBX3-201ENST00000228251 YWHABP31946 246 aaKnown RBP20.95■□□□□ 0.94
YBX3-201ENST00000228251 SFNP31947 248 aa20.95■□□□□ 0.94
YBX3-201ENST00000228251 KRT76Q01546 638 aa20.95■□□□□ 0.94
YBX3-201ENST00000228251 NAB2Q15742 525 aa20.95■□□□□ 0.94
YBX3-201ENST00000228251 NSMFQ6X4W1 530 aa20.95■□□□□ 0.94
YBX3-201ENST00000228251 CATSPERGQ6ZRH7 1159 aa20.95■□□□□ 0.94
YBX3-201ENST00000228251 CREG2Q8IUH2 290 aa20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms