RNA–Protein interactions for RNA: YKR098C

UBP11, Transcript of Ubiquitin-specific protease, yeastyeast

Gene UBP11, Length 2,154 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP11YKR098C YPS1P32329 569 aa2.02□□□□□ -2.09
UBP11YKR098C DPH5P32469 300 aaPredicted RBP2.02□□□□□ -2.09
UBP11YKR098C TMT1P32643 299 aa2.02□□□□□ -2.09
UBP11YKR098C MRPS5P33759 307 aa2.02□□□□□ -2.09
UBP11YKR098C EBP2P36049 427 aaKnown RBP2.02□□□□□ -2.09
UBP11YKR098C RTC2P38279 296 aa2.02□□□□□ -2.09
UBP11YKR098C ATG7P38862 630 aa2.02□□□□□ -2.09
UBP11YKR098C COX14P39103 70 aa2.02□□□□□ -2.09
UBP11YKR098C PRM5P40476 318 aa2.02□□□□□ -2.09
UBP11YKR098C LST7P53237 242 aa2.02□□□□□ -2.09
UBP11YKR098C EGD1Q02642 157 aaKnown RBP2.02□□□□□ -2.09
UBP11YKR098C YMR317WQ04893 1140 aa2.02□□□□□ -2.09
UBP11YKR098C NDE2Q07500 545 aa2.02□□□□□ -2.09
UBP11YKR098C YOL075CQ08234 1294 aa2.02□□□□□ -2.09
UBP11YKR098C ESA1Q08649 445 aa2.02□□□□□ -2.09
UBP11YKR098C PPT2Q12036 173 aa2.02□□□□□ -2.09
UBP11YKR098C YBR298C-AQ8TGK4 73 aa2.02□□□□□ -2.09
UBP11YKR098C DET1Q99288 334 aaKnown RBP2.02□□□□□ -2.09
UBP11YKR098C TRP1P00912 224 aa2.01□□□□□ -2.09
UBP11YKR098C GAL7P08431 366 aa2.01□□□□□ -2.09
UBP11YKR098C RPL18AP0CX49 186 aaKnown RBP2.01□□□□□ -2.09
UBP11YKR098C RPL18BP0CX50 186 aaKnown RBP2.01□□□□□ -2.09
UBP11YKR098C CIN8P27895 1000 aa2.01□□□□□ -2.09
UBP11YKR098C KAR9P32526 644 aa2.01□□□□□ -2.09
UBP11YKR098C BUD2P33314 1104 aa2.01□□□□□ -2.09
UBP11YKR098C YHK8P38776 514 aa2.01□□□□□ -2.09
UBP11YKR098C SEC27P41811 889 aaKnown RBP2.01□□□□□ -2.09
UBP11YKR098C WWM1P43582 211 aaKnown RBP2.01□□□□□ -2.09
UBP11YKR098C MRM2P53123 320 aa2.01□□□□□ -2.09
UBP11YKR098C PNC1P53184 216 aaKnown RBP2.01□□□□□ -2.09
UBP11YKR098C DBP6P53734 629 aaKnown RBP2.01□□□□□ -2.09
UBP11YKR098C LAP3Q01532 483 aaKnown RBP RIP-Chip data2.01□□□□□ -2.09not detected
UBP11YKR098C NUP116Q02630 1113 aa2.01□□□□□ -2.09
UBP11YKR098C ECM18Q04623 453 aa2.01□□□□□ -2.09
UBP11YKR098C YLH47Q06493 454 aa2.01□□□□□ -2.09
UBP11YKR098C MRPL35Q06678 367 aa2.01□□□□□ -2.09
UBP11YKR098C YLR413WQ06689 675 aa2.01□□□□□ -2.09
UBP11YKR098C VAC14Q06708 880 aa2.01□□□□□ -2.09
UBP11YKR098C APC5Q08683 685 aa2.01□□□□□ -2.09
UBP11YKR098C TIP41Q12199 356 aa2.01□□□□□ -2.09
UBP11YKR098C PAA1Q12447 191 aaKnown RBP2.01□□□□□ -2.09
UBP11YKR098C YCR024C-BQ3E7Z8 88 aa2.01□□□□□ -2.09
UBP11YKR098C RAD1P06777 1100 aa2□□□□□ -2.09
UBP11YKR098C PUT4P15380 627 aa2□□□□□ -2.09
UBP11YKR098C MSS116P15424 664 aaKnown RBP2□□□□□ -2.09
UBP11YKR098C ARF2P19146 181 aaKnown RBP2□□□□□ -2.09
UBP11YKR098C IST2P38250 946 aa2□□□□□ -2.09
UBP11YKR098C PEX32P38292 413 aa2□□□□□ -2.09
UBP11YKR098C BTT1P40314 149 aaPredicted RBP2□□□□□ -2.09
UBP11YKR098C LCB3P47013 409 aa2□□□□□ -2.09
UBP11YKR098C RPN14P53196 417 aa2□□□□□ -2.09
UBP11YKR098C TRM112P53738 135 aaPredicted RBP2□□□□□ -2.09
UBP11YKR098C YMR102CQ03177 834 aa2□□□□□ -2.09
UBP11YKR098C TDA1Q03533 586 aa2□□□□□ -2.09
UBP11YKR098C LOT6Q07923 191 aa2□□□□□ -2.09
UBP11YKR098C MRPL23Q12487 163 aaPredicted RBP2□□□□□ -2.09
UBP11YKR098C YIL002W-AQ3E7Z5 69 aa2□□□□□ -2.09
UBP11YKR098C RGS2Q99188 309 aa2□□□□□ -2.09
UBP11YKR098C SDH3P33421 198 aa2□□□□□ -2.09
UBP11YKR098C MYO3P36006 1272 aa2□□□□□ -2.09
UBP11YKR098C KRE9P39005 276 aa2□□□□□ -2.09
UBP11YKR098C YIL029CP40538 142 aa2□□□□□ -2.09
UBP11YKR098C CDC40P40968 455 aaPredicted RBP2□□□□□ -2.09
UBP11YKR098C AIP1P46680 615 aaKnown RBP2□□□□□ -2.09
UBP11YKR098C GCD14P46959 383 aaPredicted RBP2□□□□□ -2.09
UBP11YKR098C NAS6P50086 228 aa2□□□□□ -2.09
UBP11YKR098C VOA1P53262 265 aa2□□□□□ -2.09
UBP11YKR098C SPO19Q03029 223 aa2□□□□□ -2.09
UBP11YKR098C HER2Q03557 464 aa2□□□□□ -2.09
UBP11YKR098C RRG8Q06109 277 aa2□□□□□ -2.09
UBP11YKR098C TSR1Q07381 788 aaKnown RBP2□□□□□ -2.09
UBP11YKR098C DCP1Q12517 231 aaPredicted RBP2□□□□□ -2.09
UBP11YKR098C PIS1P06197 220 aaKnown RBP1.99□□□□□ -2.09
UBP11YKR098C RPS8AP0CX39 200 aaKnown RBP1.99□□□□□ -2.09
UBP11YKR098C RPS8BP0CX40 200 aaKnown RBP1.99□□□□□ -2.09
UBP11YKR098C UGA1P17649 471 aa1.99□□□□□ -2.09
UBP11YKR098C MKK1P32490 508 aa1.99□□□□□ -2.09
UBP11YKR098C PAD1P33751 242 aaKnown RBP RIP-Chip data1.99□□□□□ -2.09not detected
UBP11YKR098C FMP46P36141 133 aaKnown RBP1.99□□□□□ -2.09
UBP11YKR098C IML3P38265 245 aa1.99□□□□□ -2.09
UBP11YKR098C RBG1P39729 369 aa1.99□□□□□ -2.09
UBP11YKR098C KEG1P43614 200 aa1.99□□□□□ -2.09
UBP11YKR098C CTK3P46963 296 aaPredicted RBP1.99□□□□□ -2.09
UBP11YKR098C AIM24P47127 394 aa1.99□□□□□ -2.09
UBP11YKR098C TRF5P48561 642 aaKnown RBP1.99□□□□□ -2.09
UBP11YKR098C CSM3Q04659 317 aa1.99□□□□□ -2.09
UBP11YKR098C BUR2Q05949 395 aa1.99□□□□□ -2.09
UBP11YKR098C SMC5Q08204 1093 aa1.99□□□□□ -2.09
UBP11YKR098C YGK3Q12222 375 aaPredicted RBP1.99□□□□□ -2.09
UBP11YKR098C ERV2Q12284 196 aa1.99□□□□□ -2.09
UBP11YKR098C YMR230W-AQ3E7B5 62 aa1.99□□□□□ -2.09
UBP11YKR098C MEX67Q99257 599 aaKnown RBP1.99□□□□□ -2.09
UBP11YKR098C SUP35P05453 685 aaKnown RBP1.99□□□□□ -2.09
UBP11YKR098C SAR1P20606 190 aaKnown RBP1.99□□□□□ -2.09
UBP11YKR098C YUR1P26725 428 aa1.99□□□□□ -2.09
UBP11YKR098C RAD5P32849 1169 aaPredicted RBP1.99□□□□□ -2.09
UBP11YKR098C YHR182WP38870 785 aa1.99□□□□□ -2.09
UBP11YKR098C VPS45P38932 577 aa1.99□□□□□ -2.09
UBP11YKR098C UTP25P40498 721 aaKnown RBP1.99□□□□□ -2.09
UBP11YKR098C YCH1P42937 148 aa1.99□□□□□ -2.09
Retrieved 100 of 5,963 RNA–protein pairs in 32.3 ms