RNA–Protein interactions for RNA: ENST00000636306.1

CHD2-223, Transcript of chromodomain helicase DNA binding protein 2, human

TSL 5

Gene CHD2, Length 1,755 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD2-223	ENST00000636306	DES	P17661	470 aa		11.7	□□□□□ -0.54
CHD2-223	ENST00000636306	SP100	P23497	879 aa	Predicted RBP	11.7	□□□□□ -0.54
CHD2-223	ENST00000636306	ZBED6	P86452	979 aa		11.7	□□□□□ -0.54
CHD2-223	ENST00000636306	TSNAXIP1	Q2TAA8	658 aa		11.7	□□□□□ -0.54
CHD2-223	ENST00000636306	TCP11X2	Q5H9J9	407 aa		11.7	□□□□□ -0.54
CHD2-223	ENST00000636306	TSHZ1	Q6ZSZ6	1077 aa		11.7	□□□□□ -0.54
CHD2-223	ENST00000636306	MB21D1	Q8N884	522 aa		11.7	□□□□□ -0.54
CHD2-223	ENST00000636306	DAGLB	Q8NCG7	672 aa		11.7	□□□□□ -0.54
CHD2-223	ENST00000636306	SH3TC2	Q8TF17	1288 aa		11.7	□□□□□ -0.54
CHD2-223	ENST00000636306	CASKIN2	Q8WXE0	1202 aa		11.7	□□□□□ -0.54
CHD2-223	ENST00000636306	CCDC97	Q96F63	343 aa	Predicted RBP	11.7	□□□□□ -0.54
CHD2-223	ENST00000636306	IFT43	Q96FT9	208 aa		11.7	□□□□□ -0.54
CHD2-223	ENST00000636306	FGD4	Q96M96	766 aa		11.7	□□□□□ -0.54
CHD2-223	ENST00000636306	ZNF317	Q96PQ6	595 aa	Predicted RBP	11.7	□□□□□ -0.54
CHD2-223	ENST00000636306	TSPAN18	Q96SJ8	248 aa		11.7	□□□□□ -0.54
CHD2-223	ENST00000636306	SPZ1	Q9BXG8	430 aa		11.7	□□□□□ -0.54
CHD2-223	ENST00000636306	MAF1	Q9H063	256 aa		11.7	□□□□□ -0.54
CHD2-223	ENST00000636306	ISCU	Q9H1K1	167 aa		11.7	□□□□□ -0.54
CHD2-223	ENST00000636306	ADAM22	Q9P0K1	906 aa		11.7	□□□□□ -0.54
CHD2-223	ENST00000636306	CNOT8	Q9UFF9	292 aa	Known RBP	11.7	□□□□□ -0.54
CHD2-223	ENST00000636306	CIDEB	Q9UHD4	219 aa		11.7	□□□□□ -0.54
CHD2-223	ENST00000636306	ZNF510	Q9Y2H8	683 aa		11.7	□□□□□ -0.54
CHD2-223	ENST00000636306	PCDHB6	Q9Y5E3	794 aa		11.7	□□□□□ -0.54
CHD2-223	ENST00000636306	KCNJ18	B7U540	433 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	GLI1	P08151	1106 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	RARA	P10276	462 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	RASA1	P20936	1047 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	TMOD1	P28289	359 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	CDC25A	P30304	524 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	PCK1	P35558	622 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	CCT6A	P40227	531 aa	Known RBP	11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	STX17	P56962	302 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	GUCY2D	Q02846	1103 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	ZNF844	Q08AG5	666 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	KCNJ12	Q14500	433 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	RASA3	Q14644	834 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	SPA17	Q15506	151 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	ODF2	Q5BJF6	829 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	CC2D2B	Q6DHV5	1058 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	GPR101	Q96P66	508 aa	Predicted RBP	11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	RAB3IP	Q96QF0	476 aa	Predicted RBP	11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	CCDC28B	Q9BUN5	200 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	THAP9	Q9H5L6	903 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	SH2D4A	Q9H788	454 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	ECT2	Q9H8V3	914 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	POLD4	Q9HCU8	107 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	CTTNBP2NL	Q9P2B4	639 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	RCCD1	A6NED2	376 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	LGALS16	A8MUM7	142 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	UBE2Q2L	H0YL09	131 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	IGF2BP3	O00425	579 aa	Known RBP eCLIP	11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	NMT2	O60551	498 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	OAT	P04181	439 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	HLA-DOA	P06340	250 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	HSD17B3	P37058	310 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	SKIV2L2	P42285	1042 aa	Known RBP	11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	MATR3	P43243	847 aa	Known RBP eCLIP	11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	MSH2	P43246	934 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	CDK8	P49336	464 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	FKBP1A	P62942	108 aa	Known RBP	11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	GTF2I	P78347	998 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	UBXN1	Q04323	297 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	ARL6IP4	Q66PJ3	421 aa	Known RBP	11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	STYK1	Q6J9G0	422 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	KLHL10	Q6JEL2	608 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	TMEM154	Q6P9G4	183 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	BLID	Q8IZY5	108 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	OXER1	Q8TDS5	423 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	IFT81	Q8WYA0	676 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	TNFRSF25	Q93038	417 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	TLCD1	Q96CP7	247 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	DYNLL2	Q96FJ2	89 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	IWS1	Q96ST2	819 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	SYT15	Q9BQS2	421 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	VPS16	Q9H269	839 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	PIDD1	Q9HB75	910 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	RBM12	Q9NTZ6	932 aa	Known RBP	11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	TAB2	Q9NYJ8	693 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	SEC63	Q9UGP8	760 aa	Known RBP	11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	SAP30BP	Q9UHR5	308 aa	Known RBP	11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	PCDHA4	Q9UN74	947 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	STX8	Q9UNK0	236 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	WDR37	Q9Y2I8	494 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	DAGLA	Q9Y4D2	1042 aa		11.69	□□□□□ -0.54
CHD2-223	ENST00000636306	CCDC194	A0A1B0GVG4	234 aa		11.68	□□□□□ -0.54
CHD2-223	ENST00000636306	BHMG1	C9JSJ3	638 aa	Predicted RBP	11.68	□□□□□ -0.54
CHD2-223	ENST00000636306		H7C1D1	291 aa		11.68	□□□□□ -0.54
CHD2-223	ENST00000636306	SMIM22	K7EJ46	135 aa		11.68	□□□□□ -0.54
CHD2-223	ENST00000636306	LAD1	O00515	517 aa		11.68	□□□□□ -0.54
CHD2-223	ENST00000636306	PARP1	P09874	1014 aa	Known RBP	11.68	□□□□□ -0.54
CHD2-223	ENST00000636306	RXRB	P28702	533 aa		11.68	□□□□□ -0.54
CHD2-223	ENST00000636306	GUCY2F	P51841	1108 aa		11.68	□□□□□ -0.54
CHD2-223	ENST00000636306	EIF3B	P55884	814 aa	Known RBP	11.68	□□□□□ -0.54
CHD2-223	ENST00000636306	RHBDL3	P58872	404 aa		11.68	□□□□□ -0.54
CHD2-223	ENST00000636306	COPS2	P61201	443 aa		11.68	□□□□□ -0.54
CHD2-223	ENST00000636306	KCNJ2	P63252	427 aa		11.68	□□□□□ -0.54
CHD2-223	ENST00000636306	TNNC1	P63316	161 aa		11.68	□□□□□ -0.54
CHD2-223	ENST00000636306	ATP2C1	P98194	919 aa	Predicted RBP	11.68	□□□□□ -0.54
CHD2-223	ENST00000636306	DPYD	Q12882	1025 aa		11.68	□□□□□ -0.54
CHD2-223	ENST00000636306	BNIP1	Q12981	228 aa		11.68	□□□□□ -0.54

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