RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 ORC2Q13416 577 aaPredicted RBP20.38■□□□□ 0.85
CLN3-243ENST00000635973 NBR1Q14596 966 aa20.38■□□□□ 0.85
CLN3-243ENST00000635973 TCTN1Q2MV58 587 aa20.38■□□□□ 0.85
CLN3-243ENST00000635973 RILPL1Q5EBL4 403 aa20.38■□□□□ 0.85
CLN3-243ENST00000635973 MIER3Q7Z3K6 550 aa20.38■□□□□ 0.85
CLN3-243ENST00000635973 BRAPQ7Z569 592 aa20.38■□□□□ 0.85
CLN3-243ENST00000635973 RSPH3Q86UC2 560 aa20.38■□□□□ 0.85
CLN3-243ENST00000635973 MYOCDQ8IZQ8 938 aa20.38■□□□□ 0.85
CLN3-243ENST00000635973 LMBR1Q8WVP7 490 aa20.38■□□□□ 0.85
CLN3-243ENST00000635973 UNC45AQ9H3U1 944 aa20.38■□□□□ 0.85
CLN3-243ENST00000635973 DISC1Q9NRI5 854 aa20.38■□□□□ 0.85
CLN3-243ENST00000635973 PCDHA10Q9Y5I2 948 aa20.38■□□□□ 0.85
CLN3-243ENST00000635973 MTCH2Q9Y6C9 303 aa20.38■□□□□ 0.85
CLN3-243ENST00000635973 LCHNA4D1U4 455 aa20.37■□□□□ 0.85
CLN3-243ENST00000635973 POU3F3P20264 500 aaPredicted RBP20.37■□□□□ 0.85
CLN3-243ENST00000635973 SFNP31947 248 aa20.37■□□□□ 0.85
CLN3-243ENST00000635973 STAT5BP51692 787 aa20.37■□□□□ 0.85
CLN3-243ENST00000635973 PPFIA1Q13136 1202 aa20.37■□□□□ 0.85
CLN3-243ENST00000635973 AAK1Q2M2I8 961 aa20.37■□□□□ 0.85
CLN3-243ENST00000635973 PLEKHG4Q58EX7 1191 aa20.37■□□□□ 0.85
CLN3-243ENST00000635973 ABHD15Q6UXT9 468 aa20.37■□□□□ 0.85
CLN3-243ENST00000635973 LIN28BQ6ZN17 250 aaKnown RBP eCLIP20.37■□□□□ 0.85
CLN3-243ENST00000635973 HAS1Q92839 578 aa20.37■□□□□ 0.85
CLN3-243ENST00000635973 TNPO1Q92973 898 aaKnown RBP20.37■□□□□ 0.85
CLN3-243ENST00000635973 ZNF302Q9NR11 478 aa20.37■□□□□ 0.85
CLN3-243ENST00000635973 MTUS1Q9ULD2 1270 aa20.37■□□□□ 0.85
CLN3-243ENST00000635973 INSL6Q9Y581 213 aa20.37■□□□□ 0.85
CLN3-243ENST00000635973 EPOPA6NHQ4 379 aa20.36■□□□□ 0.85
CLN3-243ENST00000635973 ARHGEF15O94989 841 aa20.36■□□□□ 0.85
CLN3-243ENST00000635973 ATG7O95352 703 aa20.36■□□□□ 0.85
CLN3-243ENST00000635973 OR52Z1P0C646 297 aa20.36■□□□□ 0.85
CLN3-243ENST00000635973 SWSAP1Q6NVH7 229 aa20.36■□□□□ 0.85
CLN3-243ENST00000635973 TAF2Q6P1X5 1199 aa20.36■□□□□ 0.85
CLN3-243ENST00000635973 PDXDC2PQ6P474 469 aa20.36■□□□□ 0.85
CLN3-243ENST00000635973 CCDC60Q8IWA6 550 aaPredicted RBP20.36■□□□□ 0.85
CLN3-243ENST00000635973 CKAP2LQ8IYA6 745 aa20.36■□□□□ 0.85
CLN3-243ENST00000635973 APBB2Q92870 758 aa20.36■□□□□ 0.85
CLN3-243ENST00000635973 TGS1Q96RS0 853 aaKnown RBP20.36■□□□□ 0.85
CLN3-243ENST00000635973 PCYT2Q99447 389 aa20.36■□□□□ 0.85
CLN3-243ENST00000635973 TRPC6Q9Y210 931 aa20.36■□□□□ 0.85
CLN3-243ENST00000635973 CHD7Q9P2D1 2997 aa20.36■□□□□ 0.85
CLN3-243ENST00000635973 SIP14410 1827 aa20.35■□□□□ 0.85
CLN3-243ENST00000635973 TXKP42681 527 aa20.35■□□□□ 0.85
CLN3-243ENST00000635973 TOB1P50616 345 aaPredicted RBP20.35■□□□□ 0.85
CLN3-243ENST00000635973 GRB10Q13322 594 aa20.35■□□□□ 0.85
CLN3-243ENST00000635973 PPP2R5CQ13362 524 aa20.35■□□□□ 0.85
CLN3-243ENST00000635973 GRIK4Q16099 956 aa20.35■□□□□ 0.85
CLN3-243ENST00000635973 NCAPH2Q6IBW4 605 aa20.35■□□□□ 0.85
CLN3-243ENST00000635973 PLPPR4Q7Z2D5 763 aa20.35■□□□□ 0.85
CLN3-243ENST00000635973 RDM1Q8NG50 284 aa20.35■□□□□ 0.85
CLN3-243ENST00000635973 TMEM60Q9H2L4 133 aa20.35■□□□□ 0.85
CLN3-243ENST00000635973 GABBR1Q9UBS5 961 aa20.35■□□□□ 0.85
CLN3-243ENST00000635973 VAV3Q9UKW4 847 aa20.35■□□□□ 0.85
CLN3-243ENST00000635973 PCDHA12Q9UN75 941 aa20.35■□□□□ 0.85
CLN3-243ENST00000635973 MTMR6Q9Y217 621 aa20.35■□□□□ 0.85
CLN3-243ENST00000635973 PCDHB6Q9Y5E3 794 aa20.35■□□□□ 0.85
CLN3-243ENST00000635973 PRRC2BQ5JSZ5 2229 aaKnown RBP20.35■□□□□ 0.85
CLN3-243ENST00000635973 COL4A4P53420 1690 aaPredicted RBP20.35■□□□□ 0.85
CLN3-243ENST00000635973 TNFRSF10AO00220 468 aa20.34■□□□□ 0.85
CLN3-243ENST00000635973 PDIA4P13667 645 aaKnown RBP20.34■□□□□ 0.85
CLN3-243ENST00000635973 SLC26A2P50443 739 aa20.34■□□□□ 0.85
CLN3-243ENST00000635973 IGBP1P78318 339 aa20.34■□□□□ 0.85
CLN3-243ENST00000635973 IFIH1Q9BYX4 1025 aaKnown RBP20.34■□□□□ 0.85
CLN3-243ENST00000635973 TTC12Q9H892 705 aaPredicted RBP20.34■□□□□ 0.85
CLN3-243ENST00000635973 TUBE1Q9UJT0 475 aa20.34■□□□□ 0.85
CLN3-243ENST00000635973 MUC3AQ02505 3323 aa20.34■□□□□ 0.85
CLN3-243ENST00000635973 IGKV6D-21A0A0A0MT36 114 aa20.33■□□□□ 0.85
CLN3-243ENST00000635973 LINC01553A4QN01 128 aa20.33■□□□□ 0.85
CLN3-243ENST00000635973 UPP2O95045 317 aa20.33■□□□□ 0.85
CLN3-243ENST00000635973 ADAM17P78536 824 aa20.33■□□□□ 0.85
CLN3-243ENST00000635973 RESTQ13127 1097 aa20.33■□□□□ 0.85
CLN3-243ENST00000635973 TMEM266Q2M3C6 531 aa20.33■□□□□ 0.85
CLN3-243ENST00000635973 FAM26DQ5JW98 314 aa20.33■□□□□ 0.85
CLN3-243ENST00000635973 ADAMTS19Q8TE59 1207 aa20.33■□□□□ 0.85
CLN3-243ENST00000635973 GDPD5Q8WTR4 605 aa20.33■□□□□ 0.85
CLN3-243ENST00000635973 MTMR9Q96QG7 549 aa20.33■□□□□ 0.85
CLN3-243ENST00000635973 YME1L1Q96TA2 773 aa20.33■□□□□ 0.85
CLN3-243ENST00000635973 POTEB3A0JP26 581 aa20.32■□□□□ 0.84
CLN3-243ENST00000635973 RRN3P2A6NIE6 340 aa20.32■□□□□ 0.84
CLN3-243ENST00000635973 RPLP2P05387 115 aaKnown RBP20.32■□□□□ 0.84
CLN3-243ENST00000635973 ERVK-21P61565 698 aa20.32■□□□□ 0.84
CLN3-243ENST00000635973 PTGDRQ13258 359 aa20.32■□□□□ 0.84
CLN3-243ENST00000635973 FOXD4L5Q5VV16 416 aaPredicted RBP20.32■□□□□ 0.84
CLN3-243ENST00000635973 POTEBQ6S5H4 581 aa20.32■□□□□ 0.84
CLN3-243ENST00000635973 TRMT1LQ7Z2T5 733 aaKnown RBP20.32■□□□□ 0.84
CLN3-243ENST00000635973 SPRED2Q7Z698 418 aa20.32■□□□□ 0.84
CLN3-243ENST00000635973 FOXD4L4Q8WXT5 416 aaPredicted RBP20.32■□□□□ 0.84
CLN3-243ENST00000635973 ZSCAN16Q9H4T2 348 aaPredicted RBP20.32■□□□□ 0.84
CLN3-243ENST00000635973 LMCD1Q9NZU5 365 aa20.32■□□□□ 0.84
CLN3-243ENST00000635973 COG5Q9UP83 839 aa20.32■□□□□ 0.84
CLN3-243ENST00000635973 TCF20Q9UGU0 1960 aaKnown RBP20.32■□□□□ 0.84
CLN3-243ENST00000635973 IGSF9BQ9UPX0 1349 aa20.31■□□□□ 0.84
CLN3-243ENST00000635973 M0QZ92 97 aa20.31■□□□□ 0.84
CLN3-243ENST00000635973 EML1O00423 815 aa20.31■□□□□ 0.84
CLN3-243ENST00000635973 LAD1O00515 517 aa20.31■□□□□ 0.84
CLN3-243ENST00000635973 ANP32AP39687 249 aaKnown RBP20.31■□□□□ 0.84
CLN3-243ENST00000635973 PLCB4Q15147 1175 aa20.31■□□□□ 0.84
CLN3-243ENST00000635973 B3GNT9Q6UX72 402 aa20.31■□□□□ 0.84
CLN3-243ENST00000635973 RUFY4Q6ZNE9 571 aa20.31■□□□□ 0.84
CLN3-243ENST00000635973 RPAINQ86UA6 219 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms