RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 ZIM3Q96PE6 472 aa13.96□□□□□ -0.17
LINC00540-203ENST00000631321 KRT12Q99456 494 aa13.96□□□□□ -0.17
LINC00540-203ENST00000631321 TUFT1Q9NNX1 390 aa13.96□□□□□ -0.17
LINC00540-203ENST00000631321 NFU1Q9UMS0 254 aa13.96□□□□□ -0.17
LINC00540-203ENST00000631321 PACSIN2Q9UNF0 486 aaPredicted RBP13.96□□□□□ -0.17
LINC00540-203ENST00000631321 A6NNZ2 444 aa13.96□□□□□ -0.17
LINC00540-203ENST00000631321 TGFB1I1O43294 461 aa13.96□□□□□ -0.17
LINC00540-203ENST00000631321 ENOX2Q16206 610 aaKnown RBP13.96□□□□□ -0.17
LINC00540-203ENST00000631321 TUBB8Q3ZCM7 444 aa13.96□□□□□ -0.17
LINC00540-203ENST00000631321 RINT1Q6NUQ1 792 aa13.96□□□□□ -0.17
LINC00540-203ENST00000631321 SLFN11Q7Z7L1 901 aa13.96□□□□□ -0.17
LINC00540-203ENST00000631321 C1orf131Q8NDD1 294 aaKnown RBP13.96□□□□□ -0.17
LINC00540-203ENST00000631321 ARL8AQ96BM9 186 aa13.96□□□□□ -0.17
LINC00540-203ENST00000631321 RUFY1Q96T51 708 aa13.96□□□□□ -0.17
LINC00540-203ENST00000631321 CAPS2Q9BXY5 557 aa13.96□□□□□ -0.17
LINC00540-203ENST00000631321 COL2A1P02458 1487 aaPredicted RBP13.96□□□□□ -0.18
LINC00540-203ENST00000631321 KIF13BQ9NQT8 1826 aa13.95□□□□□ -0.18
LINC00540-203ENST00000631321 GDF11O95390 407 aa13.95□□□□□ -0.18
LINC00540-203ENST00000631321 GCNT3O95395 438 aa13.95□□□□□ -0.18
LINC00540-203ENST00000631321 FAM153BP0C7A2 387 aa13.95□□□□□ -0.18
LINC00540-203ENST00000631321 CASP4P49662 377 aa13.95□□□□□ -0.18
LINC00540-203ENST00000631321 CYP4A11Q02928 519 aa13.95□□□□□ -0.18
LINC00540-203ENST00000631321 FAM153CQ494X1 144 aa13.95□□□□□ -0.18
LINC00540-203ENST00000631321 MEX3CQ5U5Q3 659 aaKnown RBP13.95□□□□□ -0.18
LINC00540-203ENST00000631321 EMC10Q5UCC4 262 aa13.95□□□□□ -0.18
LINC00540-203ENST00000631321 TPCN2Q8NHX9 752 aa13.95□□□□□ -0.18
LINC00540-203ENST00000631321 CYP2W1Q8TAV3 490 aa13.95□□□□□ -0.18
LINC00540-203ENST00000631321 PIK3R5Q8WYR1 880 aa13.95□□□□□ -0.18
LINC00540-203ENST00000631321 CALR3Q96L12 384 aaKnown RBP13.95□□□□□ -0.18
LINC00540-203ENST00000631321 FAM153AQ9UHL3 310 aa13.95□□□□□ -0.18
LINC00540-203ENST00000631321 RSPH14Q9UHP6 348 aa13.95□□□□□ -0.18
LINC00540-203ENST00000631321 AJAP1Q9UKB5 411 aaPredicted RBP13.95□□□□□ -0.18
LINC00540-203ENST00000631321 ZMYM2Q9UBW7 1377 aa13.95□□□□□ -0.18
LINC00540-203ENST00000631321 ZSCAN5CA6NGD5 496 aaPredicted RBP13.95□□□□□ -0.18
LINC00540-203ENST00000631321 RAD51CO43502 376 aa13.95□□□□□ -0.18
LINC00540-203ENST00000631321 ENTPD3O75355 529 aa13.95□□□□□ -0.18
LINC00540-203ENST00000631321 NPEPPSP55786 919 aa13.95□□□□□ -0.18
LINC00540-203ENST00000631321 JAG1P78504 1218 aa13.95□□□□□ -0.18
LINC00540-203ENST00000631321 DCAF17Q5H9S7 520 aaPredicted RBP13.95□□□□□ -0.18
LINC00540-203ENST00000631321 C1orf186Q6ZWK4 172 aa13.95□□□□□ -0.18
LINC00540-203ENST00000631321 MKNK1Q9BUB5 465 aa13.95□□□□□ -0.18
LINC00540-203ENST00000631321 RASSF4Q9H2L5 321 aa13.95□□□□□ -0.18
LINC00540-203ENST00000631321 BCAS3Q9H6U6 928 aa13.95□□□□□ -0.18
LINC00540-203ENST00000631321 RGL1Q9NZL6 768 aa13.95□□□□□ -0.18
LINC00540-203ENST00000631321 GCNT4Q9P109 453 aa13.95□□□□□ -0.18
LINC00540-203ENST00000631321 STXBP5LQ9Y2K9 1186 aa13.95□□□□□ -0.18
LINC00540-203ENST00000631321 GRIN2DO15399 1336 aa13.95□□□□□ -0.18
LINC00540-203ENST00000631321 ESYT3A0FGR9 886 aa13.94□□□□□ -0.18
LINC00540-203ENST00000631321 KCNK3O14649 394 aa13.94□□□□□ -0.18
LINC00540-203ENST00000631321 EIF3HO15372 352 aaKnown RBP eCLIP13.94□□□□□ -0.18
LINC00540-203ENST00000631321 UBE4BO95155 1302 aa13.94□□□□□ -0.18
LINC00540-203ENST00000631321 COL11A2P13942 1736 aaPredicted RBP13.94□□□□□ -0.18
LINC00540-203ENST00000631321 FERP16591 822 aa13.94□□□□□ -0.18
LINC00540-203ENST00000631321 MUTP22033 750 aa13.94□□□□□ -0.18
LINC00540-203ENST00000631321 HOXA13P31271 388 aaPredicted RBP13.94□□□□□ -0.18
LINC00540-203ENST00000631321 DNA2P51530 1060 aa13.94□□□□□ -0.18
LINC00540-203ENST00000631321 KCNA1Q09470 495 aa13.94□□□□□ -0.18
LINC00540-203ENST00000631321 TRAF1Q13077 416 aa13.94□□□□□ -0.18
LINC00540-203ENST00000631321 IKQ13123 557 aaPredicted RBP13.94□□□□□ -0.18
LINC00540-203ENST00000631321 PPP2R5CQ13362 524 aa13.94□□□□□ -0.18
LINC00540-203ENST00000631321 CFAP58Q5T655 872 aa13.94□□□□□ -0.18
LINC00540-203ENST00000631321 OTOP1Q7RTM1 612 aa13.94□□□□□ -0.18
LINC00540-203ENST00000631321 VPS36Q86VN1 386 aa13.94□□□□□ -0.18
LINC00540-203ENST00000631321 OLIG1Q8TAK6 271 aa13.94□□□□□ -0.18
LINC00540-203ENST00000631321 CCDC43Q96MW1 224 aaKnown RBP13.94□□□□□ -0.18
LINC00540-203ENST00000631321 TMEM51Q9NW97 253 aa13.94□□□□□ -0.18
LINC00540-203ENST00000631321 PRR12Q9ULL5 1215 aa13.94□□□□□ -0.18
LINC00540-203ENST00000631321 ZNF233A6NK53 670 aa13.94□□□□□ -0.18
LINC00540-203ENST00000631321 DDX3XO00571 662 aaKnown RBP eCLIP13.94□□□□□ -0.18
LINC00540-203ENST00000631321 TRIM66O15016 1216 aa13.94□□□□□ -0.18
LINC00540-203ENST00000631321 PSMD10O75832 226 aa13.94□□□□□ -0.18
LINC00540-203ENST00000631321 SLITRK3O94933 977 aa13.94□□□□□ -0.18
LINC00540-203ENST00000631321 GH2P01242 217 aa13.94□□□□□ -0.18
LINC00540-203ENST00000631321 H2AFZP0C0S5 128 aa13.94□□□□□ -0.18
LINC00540-203ENST00000631321 POLD1P28340 1107 aa13.94□□□□□ -0.18
LINC00540-203ENST00000631321 ZNF76P36508 570 aa13.94□□□□□ -0.18
LINC00540-203ENST00000631321 HSPA9P38646 679 aaKnown RBP13.94□□□□□ -0.18
LINC00540-203ENST00000631321 RBM5P52756 815 aaKnown RBP eCLIP13.94□□□□□ -0.18
LINC00540-203ENST00000631321 CORO7P57737 925 aa13.94□□□□□ -0.18
LINC00540-203ENST00000631321 DNAJC21Q5F1R6 531 aaKnown RBP13.94□□□□□ -0.18
LINC00540-203ENST00000631321 RBM26Q5T8P6 1007 aaKnown RBP13.94□□□□□ -0.18
LINC00540-203ENST00000631321 H2AFVQ71UI9 128 aa13.94□□□□□ -0.18
LINC00540-203ENST00000631321 LMBR1Q8WVP7 490 aa13.94□□□□□ -0.18
LINC00540-203ENST00000631321 IFT81Q8WYA0 676 aa13.94□□□□□ -0.18
LINC00540-203ENST00000631321 WDR18Q9BV38 432 aa13.94□□□□□ -0.18
LINC00540-203ENST00000631321 ISCUQ9H1K1 167 aa13.94□□□□□ -0.18
LINC00540-203ENST00000631321 SUCLA2Q9P2R7 463 aaPredicted RBP13.94□□□□□ -0.18
LINC00540-203ENST00000631321 SEL1LQ9UBV2 794 aa13.94□□□□□ -0.18
LINC00540-203ENST00000631321 A0A1W2PRG0 241 aa13.93□□□□□ -0.18
LINC00540-203ENST00000631321 CLIC2O15247 247 aa13.93□□□□□ -0.18
LINC00540-203ENST00000631321 ECE2O60344 883 aa13.93□□□□□ -0.18
LINC00540-203ENST00000631321 TRIM37O94972 964 aa13.93□□□□□ -0.18
LINC00540-203ENST00000631321 TAL1P17542 331 aaPredicted RBP13.93□□□□□ -0.18
LINC00540-203ENST00000631321 PSMC2P35998 433 aaKnown RBP13.93□□□□□ -0.18
LINC00540-203ENST00000631321 ZNF131P52739 623 aa13.93□□□□□ -0.18
LINC00540-203ENST00000631321 RRP1BQ14684 758 aaKnown RBP13.93□□□□□ -0.18
LINC00540-203ENST00000631321 TCERG1LQ5VWI1 586 aa13.93□□□□□ -0.18
LINC00540-203ENST00000631321 COL23A1Q86Y22 540 aaPredicted RBP13.93□□□□□ -0.18
LINC00540-203ENST00000631321 RASGEF1CQ8N431 466 aa13.93□□□□□ -0.18
LINC00540-203ENST00000631321 SLC30A5Q8TAD4 765 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms