RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 METTL13Q8N6R0 699 aa23.22■■□□□ 1.31
CLN3-240ENST00000631023 EIF2AK1Q9BQI3 630 aaKnown RBP23.22■■□□□ 1.31
CLN3-240ENST00000631023 LXNQ9BS40 222 aa23.22■■□□□ 1.31
CLN3-240ENST00000631023 SIP14410 1827 aa23.22■■□□□ 1.31
CLN3-240ENST00000631023 MICAL3Q7RTP6 2002 aa23.21■■□□□ 1.31
CLN3-240ENST00000631023 HSFX4A0A1B0GTS1 333 aaPredicted RBP23.21■■□□□ 1.31
CLN3-240ENST00000631023 HSFX3A0A1B0GWH4 333 aaPredicted RBP23.21■■□□□ 1.31
CLN3-240ENST00000631023 ZBBXA8MT70 800 aa23.21■■□□□ 1.31
CLN3-240ENST00000631023 BAIAP3O94812 1187 aa23.21■■□□□ 1.31
CLN3-240ENST00000631023 C22orf31O95567 290 aa23.21■■□□□ 1.31
CLN3-240ENST00000631023 CHRNA1P02708 482 aa23.21■■□□□ 1.31
CLN3-240ENST00000631023 SYT1P21579 422 aa23.21■■□□□ 1.31
CLN3-240ENST00000631023 TECP42680 631 aa23.21■■□□□ 1.31
CLN3-240ENST00000631023 TBC1D8BQ0IIM8 1120 aa23.21■■□□□ 1.31
CLN3-240ENST00000631023 PTGDRQ13258 359 aa23.21■■□□□ 1.31
CLN3-240ENST00000631023 OTUD6AQ7L8S5 288 aa23.21■■□□□ 1.31
CLN3-240ENST00000631023 DYDC2Q96IM9 177 aa23.21■■□□□ 1.31
CLN3-240ENST00000631023 RGL1Q9NZL6 768 aa23.21■■□□□ 1.31
CLN3-240ENST00000631023 CDY2AQ9Y6F7 541 aa23.21■■□□□ 1.31
CLN3-240ENST00000631023 SLC4A7Q9Y6M7 1214 aa23.21■■□□□ 1.31
CLN3-240ENST00000631023 MYO9BQ13459 2157 aa23.21■■□□□ 1.31
CLN3-240ENST00000631023 STBD1O95210 358 aa23.2■■□□□ 1.3
CLN3-240ENST00000631023 TARBP2Q15633 366 aaKnown RBP23.2■■□□□ 1.3
CLN3-240ENST00000631023 MTERF2Q49AM1 385 aa23.2■■□□□ 1.3
CLN3-240ENST00000631023 TPH2Q8IWU9 490 aa23.2■■□□□ 1.3
CLN3-240ENST00000631023 KIAA0319LQ8IZA0 1049 aa23.2■■□□□ 1.3
CLN3-240ENST00000631023 C4orf32Q8N8J7 132 aa23.2■■□□□ 1.3
CLN3-240ENST00000631023 EIF4ENIF1Q9NRA8 985 aaKnown RBP23.2■■□□□ 1.3
CLN3-240ENST00000631023 CXXC1Q9P0U4 656 aaPredicted RBP23.2■■□□□ 1.3
CLN3-240ENST00000631023 EFCAB14O75071 495 aa23.19■■□□□ 1.3
CLN3-240ENST00000631023 SLITRK3O94933 977 aa23.19■■□□□ 1.3
CLN3-240ENST00000631023 CYP4A11Q02928 519 aa23.19■■□□□ 1.3
CLN3-240ENST00000631023 MGAT3Q09327 533 aa23.19■■□□□ 1.3
CLN3-240ENST00000631023 IKBKEQ14164 716 aa23.19■■□□□ 1.3
CLN3-240ENST00000631023 CTTNQ14247 550 aaKnown RBP23.19■■□□□ 1.3
CLN3-240ENST00000631023 EFCAB12Q6NXP0 572 aa23.19■■□□□ 1.3
CLN3-240ENST00000631023 ANO5Q75V66 913 aa23.19■■□□□ 1.3
CLN3-240ENST00000631023 ERMNQ8TAM6 284 aa23.19■■□□□ 1.3
CLN3-240ENST00000631023 SEPT8Q92599 483 aa23.19■■□□□ 1.3
CLN3-240ENST00000631023 HSD17B14Q9BPX1 270 aa23.19■■□□□ 1.3
CLN3-240ENST00000631023 RAB34Q9BZG1 259 aa23.19■■□□□ 1.3
CLN3-240ENST00000631023 PPME1Q9Y570 386 aa23.19■■□□□ 1.3
CLN3-240ENST00000631023 TRPV2Q9Y5S1 764 aa23.19■■□□□ 1.3
CLN3-240ENST00000631023 GBF1Q92538 1859 aa23.19■■□□□ 1.3
CLN3-240ENST00000631023 ABHD14A-ACY1A0A1B0GW23 586 aa23.18■■□□□ 1.3
CLN3-240ENST00000631023 POTEMA6NI47 508 aa23.18■■□□□ 1.3
CLN3-240ENST00000631023 SOX1O00570 391 aaPredicted RBP23.18■■□□□ 1.3
CLN3-240ENST00000631023 YWHABP31946 246 aaKnown RBP23.18■■□□□ 1.3
CLN3-240ENST00000631023 SMAD3P84022 425 aaKnown RBP23.18■■□□□ 1.3
CLN3-240ENST00000631023 PLEKHG4Q58EX7 1191 aa23.18■■□□□ 1.3
CLN3-240ENST00000631023 EXOC8Q8IYI6 725 aa23.18■■□□□ 1.3
CLN3-240ENST00000631023 ZNF710Q8N1W2 664 aa23.18■■□□□ 1.3
CLN3-240ENST00000631023 MAP7D2Q96T17 732 aa23.18■■□□□ 1.3
CLN3-240ENST00000631023 JPH2Q9BR39 696 aaPredicted RBP23.18■■□□□ 1.3
CLN3-240ENST00000631023 CELF4Q9BZC1 486 aaKnown RBP23.18■■□□□ 1.3
CLN3-240ENST00000631023 SQORQ9Y6N5 450 aa23.18■■□□□ 1.3
CLN3-240ENST00000631023 ARID2Q68CP9 1835 aa23.18■■□□□ 1.3
CLN3-240ENST00000631023 PRPHP41219 470 aa23.18■■□□□ 1.3
CLN3-240ENST00000631023 KCNJ6P48051 423 aa23.18■■□□□ 1.3
CLN3-240ENST00000631023 FXR2P51116 673 aaKnown RBP eCLIP23.18■■□□□ 1.3
CLN3-240ENST00000631023 TMEM62Q0P6H9 643 aa23.18■■□□□ 1.3
CLN3-240ENST00000631023 GPR153Q6NV75 609 aa23.18■■□□□ 1.3
CLN3-240ENST00000631023 DBF4BQ8NFT6 615 aa23.18■■□□□ 1.3
CLN3-240ENST00000631023 LRCH3Q96II8 777 aa23.18■■□□□ 1.3
CLN3-240ENST00000631023 SUGCTQ9HAC7 445 aa23.18■■□□□ 1.3
CLN3-240ENST00000631023 WRAP73Q9P2S5 460 aaPredicted RBP23.18■■□□□ 1.3
CLN3-240ENST00000631023 TMEM150BA6NC51 233 aa23.17■■□□□ 1.3
CLN3-240ENST00000631023 PDIA4P13667 645 aaKnown RBP23.17■■□□□ 1.3
CLN3-240ENST00000631023 DNM2P50570 870 aa23.17■■□□□ 1.3
CLN3-240ENST00000631023 PDIA5Q14554 519 aa23.17■■□□□ 1.3
CLN3-240ENST00000631023 FERMT3Q86UX7 667 aa23.17■■□□□ 1.3
CLN3-240ENST00000631023 USP38Q8NB14 1042 aa23.17■■□□□ 1.3
CLN3-240ENST00000631023 APBB2Q92870 758 aa23.17■■□□□ 1.3
CLN3-240ENST00000631023 CEP170P1Q96L14 293 aa23.17■■□□□ 1.3
CLN3-240ENST00000631023 TUFT1Q9NNX1 390 aa23.17■■□□□ 1.3
CLN3-240ENST00000631023 CYP26B1Q9NR63 512 aa23.17■■□□□ 1.3
CLN3-240ENST00000631023 STK24Q9Y6E0 443 aa23.17■■□□□ 1.3
CLN3-240ENST00000631023 KDM3AQ9Y4C1 1321 aa23.17■■□□□ 1.3
CLN3-240ENST00000631023 STX6O43752 255 aa23.16■■□□□ 1.3
CLN3-240ENST00000631023 LYPLA2O95372 231 aa23.16■■□□□ 1.3
CLN3-240ENST00000631023 GHRP10912 638 aa23.16■■□□□ 1.3
CLN3-240ENST00000631023 FBXO47Q5MNV8 452 aa23.16■■□□□ 1.3
CLN3-240ENST00000631023 PLA2G4FQ68DD2 849 aa23.16■■□□□ 1.3
CLN3-240ENST00000631023 DTHD1Q6ZMT9 781 aa23.16■■□□□ 1.3
CLN3-240ENST00000631023 PHOSPHO2Q8TCD6 241 aa23.16■■□□□ 1.3
CLN3-240ENST00000631023 IFIH1Q9BYX4 1025 aaKnown RBP23.16■■□□□ 1.3
CLN3-240ENST00000631023 AKT3Q9Y243 479 aa23.16■■□□□ 1.3
CLN3-240ENST00000631023 ATP2A2P16615 1042 aaKnown RBP23.15■■□□□ 1.3
CLN3-240ENST00000631023 CLCN3P51790 818 aa23.15■■□□□ 1.3
CLN3-240ENST00000631023 HAUS3Q68CZ6 603 aa23.15■■□□□ 1.3
CLN3-240ENST00000631023 TSHZ1Q6ZSZ6 1077 aa23.15■■□□□ 1.3
CLN3-240ENST00000631023 LRRC71Q8N4P6 559 aa23.15■■□□□ 1.3
CLN3-240ENST00000631023 SLC9A7Q96T83 725 aa23.15■■□□□ 1.3
CLN3-240ENST00000631023 SH2D3AQ9BRG2 576 aa23.15■■□□□ 1.3
CLN3-240ENST00000631023 POLR3CQ9BUI4 534 aaPredicted RBP23.15■■□□□ 1.3
CLN3-240ENST00000631023 LRWD1Q9UFC0 647 aa23.15■■□□□ 1.3
CLN3-240ENST00000631023 GINS2Q9Y248 185 aa23.15■■□□□ 1.3
CLN3-240ENST00000631023 MAFO75444 373 aaPredicted RBP23.14■■□□□ 1.3
CLN3-240ENST00000631023 BMP15O95972 392 aa23.14■■□□□ 1.3
CLN3-240ENST00000631023 XRCC6P12956 609 aaKnown RBP eCLIP23.14■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms