RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 ZNF658Q5TYW1 1059 aaPredicted RBP10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 SV2BQ7L1I2 683 aa10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 FGD4Q96M96 766 aa10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 FAM161BQ96MY7 647 aa10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 POLR3CQ9BUI4 534 aaPredicted RBP10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 SOWAHBA6NEL2 793 aa10.58□□□□□ -0.72
PDLIM5-223ENST00000627587 CHMP2AO43633 222 aa10.58□□□□□ -0.72
PDLIM5-223ENST00000627587 PRCPP42785 496 aa10.58□□□□□ -0.72
PDLIM5-223ENST00000627587 TPM4P67936 248 aa10.58□□□□□ -0.72
PDLIM5-223ENST00000627587 XRRA1Q6P2D8 792 aa10.58□□□□□ -0.72
PDLIM5-223ENST00000627587 MAMDC4Q6UXC1 1216 aa10.58□□□□□ -0.72
PDLIM5-223ENST00000627587 ANKRD33Q7Z3H0 272 aa10.58□□□□□ -0.72
PDLIM5-223ENST00000627587 ZNF467Q7Z7K2 595 aaPredicted RBP10.58□□□□□ -0.72
PDLIM5-223ENST00000627587 FAM133AQ8N9E0 248 aa10.58□□□□□ -0.72
PDLIM5-223ENST00000627587 GIMAP8Q8ND71 665 aaPredicted RBP10.58□□□□□ -0.72
PDLIM5-223ENST00000627587 MAFAQ8NHW3 353 aaPredicted RBP10.58□□□□□ -0.72
PDLIM5-223ENST00000627587 NSUN6Q8TEA1 469 aaKnown RBP10.58□□□□□ -0.72
PDLIM5-223ENST00000627587 HPS3Q969F9 1004 aa10.58□□□□□ -0.72
PDLIM5-223ENST00000627587 CCDC47Q96A33 483 aaKnown RBP10.58□□□□□ -0.72
PDLIM5-223ENST00000627587 LRRC27Q9C0I9 530 aa10.58□□□□□ -0.72
PDLIM5-223ENST00000627587 BCAS3Q9H6U6 928 aa10.58□□□□□ -0.72
PDLIM5-223ENST00000627587 TMEM39AQ9NV64 488 aa10.58□□□□□ -0.72
PDLIM5-223ENST00000627587 PKD2L1Q9P0L9 805 aa10.58□□□□□ -0.72
PDLIM5-223ENST00000627587 TELO2Q9Y4R8 837 aa10.58□□□□□ -0.72
PDLIM5-223ENST00000627587 SYNGAP1Q96PV0 1343 aa10.58□□□□□ -0.72
PDLIM5-223ENST00000627587 COL6A3P12111 3177 aa10.58□□□□□ -0.72
PDLIM5-223ENST00000627587 CUL9Q8IWT3 2517 aa10.58□□□□□ -0.72
PDLIM5-223ENST00000627587 MROH7Q68CQ1 1323 aa10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 DNAJC25-GNG10A0A024R161 153 aa10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 ZBTB39O15060 712 aa10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 CCNE2O96020 404 aa10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 PLA2G4BP0C869 781 aa10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 ZNF18P17022 549 aa10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 CYP11B2P19099 503 aa10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 ERCC5P28715 1186 aaPredicted RBP10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 CCND2P30279 289 aa10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 ZNF75DP51815 510 aa10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 FPGSQ05932 587 aa10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 STK4Q13043 487 aa10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 CTTNQ14247 550 aaKnown RBP10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 CT47A1Q5JQC4 288 aaPredicted RBP10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 DYMQ7RTS9 669 aa10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 ANKRD35Q8N283 1001 aa10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 PCSK9Q8NBP7 692 aaKnown RBP10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 KIAA0895Q8NCT3 520 aa10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 ENOX1Q8TC92 643 aaKnown RBP10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 DDX12PQ92771 950 aa10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 DYDC2Q96IM9 177 aa10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 TEKT3Q9BXF9 490 aa10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 SPC25Q9HBM1 224 aa10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 FANCLQ9NW38 375 aa10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 MYH9P35579 1960 aaKnown RBP10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 NPHP3-ACAD11A0A0J9YXS1 232 aa10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 A0A1W2PQ45 241 aaPredicted RBP10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 A0A1W2PQY0 241 aa10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 DDX39AO00148 427 aaKnown RBP10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 ADAMTS4O75173 837 aa10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 DUSP11O75319 330 aaKnown RBP10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 PGK2P07205 417 aa10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 KCNA2P16389 499 aa10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 EDNRBP24530 442 aa10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 ACLYP53396 1101 aa10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 PMS1P54277 932 aaKnown RBP10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 ASIC1P78348 528 aa10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 ADSSL1Q8N142 457 aa10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 KLHDC9Q8NEP7 349 aa10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 DNERQ8NFT8 737 aa10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 RNPC3Q96LT9 517 aaKnown RBP10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 STARD7Q9NQZ5 370 aa10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 MAPK8IP1Q9UQF2 711 aa10.57□□□□□ -0.72
PDLIM5-223ENST00000627587 LAMA3Q16787 3333 aa10.56□□□□□ -0.72
PDLIM5-223ENST00000627587 FRMD3A2A2Y4 597 aa10.56□□□□□ -0.72
PDLIM5-223ENST00000627587 PGK1P00558 417 aa10.56□□□□□ -0.72
PDLIM5-223ENST00000627587 TIMP1P01033 207 aa10.56□□□□□ -0.72
PDLIM5-223ENST00000627587 ALDH5A1P51649 535 aaPredicted RBP10.56□□□□□ -0.72
PDLIM5-223ENST00000627587 EPHA7Q15375 998 aa10.56□□□□□ -0.72
PDLIM5-223ENST00000627587 KLHL10Q6JEL2 608 aa10.56□□□□□ -0.72
PDLIM5-223ENST00000627587 UNC13DQ70J99 1090 aa10.56□□□□□ -0.72
PDLIM5-223ENST00000627587 APTXQ7Z2E3 356 aaKnown RBP10.56□□□□□ -0.72
PDLIM5-223ENST00000627587 KCTD17Q8N5Z5 321 aa10.56□□□□□ -0.72
PDLIM5-223ENST00000627587 SYT2Q8N9I0 419 aaPredicted RBP10.56□□□□□ -0.72
PDLIM5-223ENST00000627587 GLIS3Q8NEA6 775 aa10.56□□□□□ -0.72
PDLIM5-223ENST00000627587 GPRASP2Q96D09 838 aa10.56□□□□□ -0.72
PDLIM5-223ENST00000627587 ABHD16BQ9H3Z7 469 aa10.56□□□□□ -0.72
PDLIM5-223ENST00000627587 TUFT1Q9NNX1 390 aa10.56□□□□□ -0.72
PDLIM5-223ENST00000627587 SAMSN1Q9NSI8 373 aaKnown RBP10.56□□□□□ -0.72
PDLIM5-223ENST00000627587 NFE2L3Q9Y4A8 694 aa10.56□□□□□ -0.72
PDLIM5-223ENST00000627587 SYNRGQ9UMZ2 1314 aa10.55□□□□□ -0.72
PDLIM5-223ENST00000627587 PVALEFA0A1B0GWK0 134 aa10.55□□□□□ -0.72
PDLIM5-223ENST00000627587 MAFGO15525 162 aa10.55□□□□□ -0.72
PDLIM5-223ENST00000627587 PQBP1O60828 265 aaKnown RBP10.55□□□□□ -0.72
PDLIM5-223ENST00000627587 STAM2O75886 525 aa10.55□□□□□ -0.72
PDLIM5-223ENST00000627587 FOSL2P15408 326 aa10.55□□□□□ -0.72
PDLIM5-223ENST00000627587 CST5P28325 142 aaPredicted RBP10.55□□□□□ -0.72
PDLIM5-223ENST00000627587 STX17P56962 302 aa10.55□□□□□ -0.72
PDLIM5-223ENST00000627587 SP2Q02086 613 aa10.55□□□□□ -0.72
PDLIM5-223ENST00000627587 PDE4DQ08499 809 aa10.55□□□□□ -0.72
PDLIM5-223ENST00000627587 COBLL1Q53SF7 1204 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms