RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 GBP6Q6ZN66 633 aa14.13□□□□□ -0.15
CCDC88A-214ENST00000621814 KRT27Q7Z3Y8 459 aa14.13□□□□□ -0.15
CCDC88A-214ENST00000621814 ZBTB21Q9ULJ3 1066 aa14.13□□□□□ -0.15
CCDC88A-214ENST00000621814 ASTN1O14525 1302 aa14.13□□□□□ -0.15
CCDC88A-214ENST00000621814 MYO3BQ8WXR4 1341 aa14.13□□□□□ -0.15
CCDC88A-214ENST00000621814 FRMD3A2A2Y4 597 aa14.13□□□□□ -0.15
CCDC88A-214ENST00000621814 TULP2O00295 520 aa14.13□□□□□ -0.15
CCDC88A-214ENST00000621814 TRIM49P0CI25 452 aa14.13□□□□□ -0.15
CCDC88A-214ENST00000621814 TRIM49CP0CI26 452 aa14.13□□□□□ -0.15
CCDC88A-214ENST00000621814 SREBF1P36956 1147 aa14.13□□□□□ -0.15
CCDC88A-214ENST00000621814 CCT5P48643 541 aa14.13□□□□□ -0.15
CCDC88A-214ENST00000621814 PRPF4BQ13523 1007 aaKnown RBP14.13□□□□□ -0.15
CCDC88A-214ENST00000621814 ARHGAP44Q17R89 818 aa14.13□□□□□ -0.15
CCDC88A-214ENST00000621814 Q4G0T1 1027 aa14.13□□□□□ -0.15
CCDC88A-214ENST00000621814 DACT2Q5SW24 774 aa14.13□□□□□ -0.15
CCDC88A-214ENST00000621814 NAA35Q5VZE5 725 aa14.13□□□□□ -0.15
CCDC88A-214ENST00000621814 MIGA2Q7L4E1 593 aa14.13□□□□□ -0.15
CCDC88A-214ENST00000621814 MAATS1Q7Z4T9 603 aa14.13□□□□□ -0.15
CCDC88A-214ENST00000621814 FRMD5Q7Z6J6 570 aa14.13□□□□□ -0.15
CCDC88A-214ENST00000621814 DAAM2Q86T65 1068 aa14.13□□□□□ -0.15
CCDC88A-214ENST00000621814 CASKIN2Q8WXE0 1202 aa14.13□□□□□ -0.15
CCDC88A-214ENST00000621814 CAPS2Q9BXY5 557 aa14.13□□□□□ -0.15
CCDC88A-214ENST00000621814 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.13□□□□□ -0.15
CCDC88A-214ENST00000621814 TRAF3IP3Q9Y228 551 aa14.13□□□□□ -0.15
CCDC88A-214ENST00000621814 MARSP56192 900 aaKnown RBP14.13□□□□□ -0.15
CCDC88A-214ENST00000621814 TTMPQ5BVD1 217 aa14.13□□□□□ -0.15
CCDC88A-214ENST00000621814 KIAA1755Q5JYT7 1200 aa14.13□□□□□ -0.15
CCDC88A-214ENST00000621814 PDXKO00764 312 aa14.12□□□□□ -0.15
CCDC88A-214ENST00000621814 OPA1O60313 960 aa14.12□□□□□ -0.15
CCDC88A-214ENST00000621814 EMBQ6PCB8 327 aa14.12□□□□□ -0.15
CCDC88A-214ENST00000621814 PEX26Q7Z412 305 aa14.12□□□□□ -0.15
CCDC88A-214ENST00000621814 GLYCTKQ8IVS8 523 aa14.12□□□□□ -0.15
CCDC88A-214ENST00000621814 SLC35C1Q96A29 364 aa14.12□□□□□ -0.15
CCDC88A-214ENST00000621814 FAM20AQ96MK3 541 aa14.12□□□□□ -0.15
CCDC88A-214ENST00000621814 WDR18Q9BV38 432 aa14.12□□□□□ -0.15
CCDC88A-214ENST00000621814 DDX47Q9H0S4 455 aaKnown RBP14.12□□□□□ -0.15
CCDC88A-214ENST00000621814 TYW1Q9NV66 732 aaKnown RBP14.12□□□□□ -0.15
CCDC88A-214ENST00000621814 VAV3Q9UKW4 847 aa14.12□□□□□ -0.15
CCDC88A-214ENST00000621814 PCDHGC5Q9Y5F6 944 aa14.12□□□□□ -0.15
CCDC88A-214ENST00000621814 LRRN2O75325 713 aa14.12□□□□□ -0.15
CCDC88A-214ENST00000621814 IRAK1P51617 712 aa14.12□□□□□ -0.15
CCDC88A-214ENST00000621814 STAT2P52630 851 aa14.12□□□□□ -0.15
CCDC88A-214ENST00000621814 ITIH3Q06033 890 aa14.12□□□□□ -0.15
CCDC88A-214ENST00000621814 PDCLQ13371 301 aa14.12□□□□□ -0.15
CCDC88A-214ENST00000621814 STRIP1Q5VSL9 837 aa14.12□□□□□ -0.15
CCDC88A-214ENST00000621814 TATDN1Q6P1N9 297 aa14.12□□□□□ -0.15
CCDC88A-214ENST00000621814 ZNF572Q7Z3I7 529 aaPredicted RBP14.12□□□□□ -0.15
CCDC88A-214ENST00000621814 FAM186BQ8IYM0 893 aa14.12□□□□□ -0.15
CCDC88A-214ENST00000621814 SYCP3Q8IZU3 236 aa14.12□□□□□ -0.15
CCDC88A-214ENST00000621814 BANK1Q8NDB2 785 aa14.12□□□□□ -0.15
CCDC88A-214ENST00000621814 BCAS4Q8TDM0 211 aa14.12□□□□□ -0.15
CCDC88A-214ENST00000621814 CRYGNQ8WXF5 182 aa14.12□□□□□ -0.15
CCDC88A-214ENST00000621814 TRIM31Q9BZY9 425 aa14.12□□□□□ -0.15
CCDC88A-214ENST00000621814 SAMM50Q9Y512 469 aa14.12□□□□□ -0.15
CCDC88A-214ENST00000621814 GAS7O60861 476 aa14.11□□□□□ -0.15
CCDC88A-214ENST00000621814 FLOT1O75955 427 aa14.11□□□□□ -0.15
CCDC88A-214ENST00000621814 SLITRK3O94933 977 aa14.11□□□□□ -0.15
CCDC88A-214ENST00000621814 FOSP01100 380 aaPredicted RBP14.11□□□□□ -0.15
CCDC88A-214ENST00000621814 PAK2Q13177 524 aa14.11□□□□□ -0.15
CCDC88A-214ENST00000621814 NNTQ13423 1086 aa14.11□□□□□ -0.15
CCDC88A-214ENST00000621814 EPHA7Q15375 998 aa14.11□□□□□ -0.15
CCDC88A-214ENST00000621814 USP38Q8NB14 1042 aa14.11□□□□□ -0.15
CCDC88A-214ENST00000621814 VEZTQ9HBM0 779 aa14.11□□□□□ -0.15
CCDC88A-214ENST00000621814 OSGEPQ9NPF4 335 aa14.11□□□□□ -0.15
CCDC88A-214ENST00000621814 TGFB1I1O43294 461 aa14.11□□□□□ -0.15
CCDC88A-214ENST00000621814 PPFIA1Q13136 1202 aa14.11□□□□□ -0.15
CCDC88A-214ENST00000621814 ODR4Q5SWX8 454 aa14.11□□□□□ -0.15
CCDC88A-214ENST00000621814 VPS36Q86VN1 386 aa14.11□□□□□ -0.15
CCDC88A-214ENST00000621814 MBOAT7Q96N66 472 aa14.11□□□□□ -0.15
CCDC88A-214ENST00000621814 RASSF4Q9H2L5 321 aa14.11□□□□□ -0.15
CCDC88A-214ENST00000621814 PCIF1Q9H4Z3 704 aa14.11□□□□□ -0.15
CCDC88A-214ENST00000621814 BCCIPQ9P287 314 aaKnown RBP eCLIP14.11□□□□□ -0.15
CCDC88A-214ENST00000621814 SPATA31A6Q5VVP1 1343 aa14.11□□□□□ -0.15
CCDC88A-214ENST00000621814 KIF4AO95239 1232 aa14.11□□□□□ -0.15
CCDC88A-214ENST00000621814 EYA4O95677 639 aa14.11□□□□□ -0.15
CCDC88A-214ENST00000621814 APBA3O96018 575 aa14.11□□□□□ -0.15
CCDC88A-214ENST00000621814 TNNC1P63316 161 aa14.11□□□□□ -0.15
CCDC88A-214ENST00000621814 EPM2AIP1Q7L775 607 aaPredicted RBP14.11□□□□□ -0.15
CCDC88A-214ENST00000621814 FAM178BQ8IXR5 827 aa14.11□□□□□ -0.15
CCDC88A-214ENST00000621814 OR2W6PQ8NHA6 318 aa14.11□□□□□ -0.15
CCDC88A-214ENST00000621814 INPP4AQ96PE3 977 aaPredicted RBP14.11□□□□□ -0.15
CCDC88A-214ENST00000621814 IDI2Q9BXS1 227 aa14.11□□□□□ -0.15
CCDC88A-214ENST00000621814 CHORDC1Q9UHD1 332 aaPredicted RBP14.11□□□□□ -0.15
CCDC88A-214ENST00000621814 MYH4Q9Y623 1939 aa14.1□□□□□ -0.15
CCDC88A-214ENST00000621814 GOLGA8KD6RF30 607 aa14.1□□□□□ -0.15
CCDC88A-214ENST00000621814 H0YIN7 160 aa14.1□□□□□ -0.15
CCDC88A-214ENST00000621814 KRIT1O00522 736 aa14.1□□□□□ -0.15
CCDC88A-214ENST00000621814 H2AFZP0C0S5 128 aa14.1□□□□□ -0.15
CCDC88A-214ENST00000621814 ITGA4P13612 1032 aa14.1□□□□□ -0.15
CCDC88A-214ENST00000621814 HPDP32754 393 aaPredicted RBP14.1□□□□□ -0.15
CCDC88A-214ENST00000621814 H2AFVQ71UI9 128 aa14.1□□□□□ -0.15
CCDC88A-214ENST00000621814 OTOP1Q7RTM1 612 aa14.1□□□□□ -0.15
CCDC88A-214ENST00000621814 METTL13Q8N6R0 699 aa14.1□□□□□ -0.15
CCDC88A-214ENST00000621814 FAM107BQ9H098 131 aa14.1□□□□□ -0.15
CCDC88A-214ENST00000621814 FBXO28Q9NVF7 368 aa14.1□□□□□ -0.15
CCDC88A-214ENST00000621814 WRAP73Q9P2S5 460 aaPredicted RBP14.1□□□□□ -0.15
CCDC88A-214ENST00000621814 VGLL3A8MV65 326 aa14.1□□□□□ -0.15
CCDC88A-214ENST00000621814 TBX3O15119 743 aa14.1□□□□□ -0.15
CCDC88A-214ENST00000621814 PPP1R12BO60237 982 aaPredicted RBP14.1□□□□□ -0.15
CCDC88A-214ENST00000621814 EVI5O60447 810 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms