RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 GIT2Q14161 759 aa17.24■□□□□ 0.35
CPSF1-213ENST00000620219 TMEM143Q96AN5 459 aa17.24■□□□□ 0.35
CPSF1-213ENST00000620219 POLR3CQ9BUI4 534 aaPredicted RBP17.24■□□□□ 0.35
CPSF1-213ENST00000620219 KIAA1551Q9HCM1 1747 aa17.24■□□□□ 0.35
CPSF1-213ENST00000620219 GOLGA6L9A6NEM1 432 aa17.24■□□□□ 0.35
CPSF1-213ENST00000620219 STX10O60499 249 aa17.24■□□□□ 0.35
CPSF1-213ENST00000620219 MFAP3LO75121 409 aa17.24■□□□□ 0.35
CPSF1-213ENST00000620219 EXOC3L4Q17RC7 722 aa17.24■□□□□ 0.35
CPSF1-213ENST00000620219 CCDC181Q5TID7 509 aa17.24■□□□□ 0.35
CPSF1-213ENST00000620219 SPATA33Q96N06 139 aa17.24■□□□□ 0.35
CPSF1-213ENST00000620219 MOV10L1Q9BXT6 1211 aaKnown RBP17.24■□□□□ 0.35
CPSF1-213ENST00000620219 AFG3L2Q9Y4W6 797 aa17.24■□□□□ 0.35
CPSF1-213ENST00000620219 UBXN4Q92575 508 aa17.24■□□□□ 0.35
CPSF1-213ENST00000620219 NLRP4Q96MN2 994 aa17.24■□□□□ 0.35
CPSF1-213ENST00000620219 DDX60LQ5H9U9 1706 aaKnown RBP17.23■□□□□ 0.35
CPSF1-213ENST00000620219 INO80B-WBP1J3KQ70 363 aa17.23■□□□□ 0.35
CPSF1-213ENST00000620219 CIITAP33076 1130 aa17.23■□□□□ 0.35
CPSF1-213ENST00000620219 CYP27A1Q02318 531 aa17.23■□□□□ 0.35
CPSF1-213ENST00000620219 TAF1CQ15572 869 aaPredicted RBP17.23■□□□□ 0.35
CPSF1-213ENST00000620219 TMEM119Q4V9L6 283 aa17.23■□□□□ 0.35
CPSF1-213ENST00000620219 FBXO16Q8IX29 292 aaPredicted RBP17.23■□□□□ 0.35
CPSF1-213ENST00000620219 INO80BQ9C086 356 aaPredicted RBP17.23■□□□□ 0.35
CPSF1-213ENST00000620219 CYP39A1Q9NYL5 469 aa17.23■□□□□ 0.35
CPSF1-213ENST00000620219 MAST2Q6P0Q8 1798 aa17.23■□□□□ 0.35
CPSF1-213ENST00000620219 DYNC1I1O14576 645 aa17.23■□□□□ 0.35
CPSF1-213ENST00000620219 ACTR2P61160 394 aa17.23■□□□□ 0.35
CPSF1-213ENST00000620219 KLHL30Q0D2K2 578 aa17.23■□□□□ 0.35
CPSF1-213ENST00000620219 CYP3A7-CYP3A51PA0A087WV96 503 aa17.23■□□□□ 0.35
CPSF1-213ENST00000620219 DENND3A2RUS2 1198 aa17.23■□□□□ 0.35
CPSF1-213ENST00000620219 GYPCP04921 128 aa17.23■□□□□ 0.35
CPSF1-213ENST00000620219 CYP3A4P08684 503 aa17.23■□□□□ 0.35
CPSF1-213ENST00000620219 CYP3A7P24462 503 aa17.23■□□□□ 0.35
CPSF1-213ENST00000620219 PSMC2P35998 433 aaKnown RBP17.23■□□□□ 0.35
CPSF1-213ENST00000620219 KRT83P78385 493 aa17.23■□□□□ 0.35
CPSF1-213ENST00000620219 TTI2Q6NXR4 508 aa17.23■□□□□ 0.35
CPSF1-213ENST00000620219 USP37Q86T82 979 aa17.23■□□□□ 0.35
CPSF1-213ENST00000620219 GPRC5AQ8NFJ5 357 aa17.23■□□□□ 0.35
CPSF1-213ENST00000620219 CLEC4DQ8WXI8 215 aa17.23■□□□□ 0.35
CPSF1-213ENST00000620219 ACCSQ96QU6 501 aa17.23■□□□□ 0.35
CPSF1-213ENST00000620219 PSMB7Q99436 277 aa17.23■□□□□ 0.35
CPSF1-213ENST00000620219 PDHXO00330 501 aa17.23■□□□□ 0.35
CPSF1-213ENST00000620219 CXCL11O14625 94 aa17.23■□□□□ 0.35
CPSF1-213ENST00000620219 MYCP01106 439 aaPredicted RBP17.23■□□□□ 0.35
CPSF1-213ENST00000620219 TRIM49P0CI25 452 aa17.23■□□□□ 0.35
CPSF1-213ENST00000620219 TRIM49CP0CI26 452 aa17.23■□□□□ 0.35
CPSF1-213ENST00000620219 OSTNP61366 133 aa17.23■□□□□ 0.35
CPSF1-213ENST00000620219 ETF1P62495 437 aaKnown RBP17.23■□□□□ 0.35
CPSF1-213ENST00000620219 PRKCEQ02156 737 aa17.23■□□□□ 0.35
CPSF1-213ENST00000620219 PTPROQ16827 1216 aa17.23■□□□□ 0.35
CPSF1-213ENST00000620219 CDKAL1Q5VV42 579 aa17.23■□□□□ 0.35
CPSF1-213ENST00000620219 HAUS6Q7Z4H7 955 aa17.23■□□□□ 0.35
CPSF1-213ENST00000620219 SLC5A5Q92911 643 aa17.23■□□□□ 0.35
CPSF1-213ENST00000620219 CHP1Q99653 195 aa17.23■□□□□ 0.35
CPSF1-213ENST00000620219 MYH15Q9Y2K3 1946 aa17.22■□□□□ 0.35
CPSF1-213ENST00000620219 PSMD10O75832 226 aa17.22■□□□□ 0.35
CPSF1-213ENST00000620219 CETPP11597 493 aa17.22■□□□□ 0.35
CPSF1-213ENST00000620219 Q3C1V9 767 aa17.22■□□□□ 0.35
CPSF1-213ENST00000620219 SAAL1Q96ER3 474 aa17.22■□□□□ 0.35
CPSF1-213ENST00000620219 AGPAT5Q9NUQ2 364 aa17.22■□□□□ 0.35
CPSF1-213ENST00000620219 TFR2Q9UP52 801 aa17.22■□□□□ 0.35
CPSF1-213ENST00000620219 MRPS9P82933 396 aaKnown RBP17.22■□□□□ 0.35
CPSF1-213ENST00000620219 KCNH2Q12809 1159 aa17.22■□□□□ 0.35
CPSF1-213ENST00000620219 NEDD9Q14511 834 aa17.22■□□□□ 0.35
CPSF1-213ENST00000620219 SFMBT2Q5VUG0 894 aa17.22■□□□□ 0.35
CPSF1-213ENST00000620219 PDCL2Q8N4E4 241 aa17.22■□□□□ 0.35
CPSF1-213ENST00000620219 NEK9Q8TD19 979 aa17.22■□□□□ 0.35
CPSF1-213ENST00000620219 CPA4Q9UI42 421 aa17.22■□□□□ 0.35
CPSF1-213ENST00000620219 KRT86O43790 486 aa17.22■□□□□ 0.35
CPSF1-213ENST00000620219 SPATA31C1P0DKV0 1188 aa17.22■□□□□ 0.35
CPSF1-213ENST00000620219 GBP6Q6ZN66 633 aa17.22■□□□□ 0.35
CPSF1-213ENST00000620219 CAPZA3Q96KX2 299 aa17.22■□□□□ 0.35
CPSF1-213ENST00000620219 CARD6Q9BX69 1037 aa17.22■□□□□ 0.35
CPSF1-213ENST00000620219 EPN1Q9Y6I3 576 aaPredicted RBP17.22■□□□□ 0.35
CPSF1-213ENST00000620219 EIF3JO75822 258 aaKnown RBP17.21■□□□□ 0.35
CPSF1-213ENST00000620219 STAT5BP51692 787 aa17.21■□□□□ 0.35
CPSF1-213ENST00000620219 KCNA1Q09470 495 aa17.21■□□□□ 0.35
CPSF1-213ENST00000620219 ASIC2Q16515 512 aa17.21■□□□□ 0.35
CPSF1-213ENST00000620219 SLC9C1Q4G0N8 1177 aa17.21■□□□□ 0.35
CPSF1-213ENST00000620219 DPH6Q7L8W6 267 aa17.21■□□□□ 0.35
CPSF1-213ENST00000620219 NMRK2Q9NPI5 230 aa17.21■□□□□ 0.35
CPSF1-213ENST00000620219 LIMA1Q9UHB6 759 aaKnown RBP17.21■□□□□ 0.35
CPSF1-213ENST00000620219 LAMB1P07942 1786 aa17.21■□□□□ 0.35
CPSF1-213ENST00000620219 MYH8P13535 1937 aa17.21■□□□□ 0.35
CPSF1-213ENST00000620219 ZNF536O15090 1300 aa17.21■□□□□ 0.35
CPSF1-213ENST00000620219 A0A0U1RQG5 324 aaPredicted RBP17.21■□□□□ 0.35
CPSF1-213ENST00000620219 LRRN2O75325 713 aa17.21■□□□□ 0.35
CPSF1-213ENST00000620219 AFPP02771 609 aaKnown RBP17.21■□□□□ 0.35
CPSF1-213ENST00000620219 KRT5P13647 590 aa17.21■□□□□ 0.35
CPSF1-213ENST00000620219 SSR1P43307 286 aaKnown RBP17.21■□□□□ 0.35
CPSF1-213ENST00000620219 LY6KQ17RY6 165 aa17.21■□□□□ 0.35
CPSF1-213ENST00000620219 ZBTB33Q86T24 672 aa17.21■□□□□ 0.35
CPSF1-213ENST00000620219 FGFBP2Q9BYJ0 223 aa17.21■□□□□ 0.35
CPSF1-213ENST00000620219 METTL14Q9HCE5 456 aaKnown RBP17.21■□□□□ 0.35
CPSF1-213ENST00000620219 MAGEA1P43355 309 aa17.21■□□□□ 0.35
CPSF1-213ENST00000620219 ITGB3BPQ13352 177 aaPredicted RBP17.21■□□□□ 0.35
CPSF1-213ENST00000620219 IWS1Q96ST2 819 aa17.21■□□□□ 0.35
CPSF1-213ENST00000620219 BTBD7Q9P203 1132 aa17.21■□□□□ 0.35
CPSF1-213ENST00000620219 CASP5P51878 434 aa17.21■□□□□ 0.34
CPSF1-213ENST00000620219 FAM47CQ5HY64 1035 aa17.21■□□□□ 0.34
CPSF1-213ENST00000620219 VSIG10LQ86VR7 867 aa17.21■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms