RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 SH2D3AQ9BRG2 576 aa18.53■□□□□ 0.56
CCDC28A-202ENST00000611852 POLR3CQ9BUI4 534 aaPredicted RBP18.53■□□□□ 0.56
CCDC28A-202ENST00000611852 TUFT1Q9NNX1 390 aa18.53■□□□□ 0.56
CCDC28A-202ENST00000611852 ZDHHC9Q9Y397 364 aa18.53■□□□□ 0.56
CCDC28A-202ENST00000611852 TANC1Q9C0D5 1861 aa18.52■□□□□ 0.56
CCDC28A-202ENST00000611852 SMIM35A0A1B0GVV1 85 aa18.52■□□□□ 0.56
CCDC28A-202ENST00000611852 ZBTB39O15060 712 aa18.52■□□□□ 0.56
CCDC28A-202ENST00000611852 CAND2O75155 1236 aa18.52■□□□□ 0.56
CCDC28A-202ENST00000611852 RPA1P27694 616 aa18.52■□□□□ 0.56
CCDC28A-202ENST00000611852 BMP8BP34820 402 aa18.52■□□□□ 0.56
CCDC28A-202ENST00000611852 CEBPZQ03701 1054 aaKnown RBP18.52■□□□□ 0.56
CCDC28A-202ENST00000611852 MTERF2Q49AM1 385 aa18.52■□□□□ 0.56
CCDC28A-202ENST00000611852 PLA2G4FQ68DD2 849 aa18.52■□□□□ 0.56
CCDC28A-202ENST00000611852 CHRDL2Q6WN34 429 aa18.52■□□□□ 0.56
CCDC28A-202ENST00000611852 PRO3102Q9H379 93 aa18.52■□□□□ 0.56
CCDC28A-202ENST00000611852 PP2D1A8MPX8 630 aa18.51■□□□□ 0.55
CCDC28A-202ENST00000611852 MAGEB2O15479 319 aa18.51■□□□□ 0.55
CCDC28A-202ENST00000611852 EPHB4P54760 987 aa18.51■□□□□ 0.55
CCDC28A-202ENST00000611852 NPEPPSP55786 919 aa18.51■□□□□ 0.55
CCDC28A-202ENST00000611852 PPIGQ13427 754 aaKnown RBP eCLIP18.51■□□□□ 0.55
CCDC28A-202ENST00000611852 HAUS3Q68CZ6 603 aa18.51■□□□□ 0.55
CCDC28A-202ENST00000611852 FAM49AQ9H0Q0 323 aaPredicted RBP18.51■□□□□ 0.55
CCDC28A-202ENST00000611852 CYP26B1Q9NR63 512 aa18.51■□□□□ 0.55
CCDC28A-202ENST00000611852 STK24Q9Y6E0 443 aa18.51■□□□□ 0.55
CCDC28A-202ENST00000611852 EVPLQ92817 2033 aa18.51■□□□□ 0.55
CCDC28A-202ENST00000611852 RANBP2P49792 3224 aaKnown RBP18.51■□□□□ 0.55
CCDC28A-202ENST00000611852 SCN5AQ14524 2016 aa18.5■□□□□ 0.55
CCDC28A-202ENST00000611852 RSPH10B2B2RC85 870 aa18.5■□□□□ 0.55
CCDC28A-202ENST00000611852 RPLP2P05387 115 aaKnown RBP18.5■□□□□ 0.55
CCDC28A-202ENST00000611852 CTSHP09668 335 aa18.5■□□□□ 0.55
CCDC28A-202ENST00000611852 RSPH10BP0C881 870 aa18.5■□□□□ 0.55
CCDC28A-202ENST00000611852 CDC25AP30304 524 aa18.5■□□□□ 0.55
CCDC28A-202ENST00000611852 CCT6AP40227 531 aaKnown RBP18.5■□□□□ 0.55
CCDC28A-202ENST00000611852 NASPP49321 788 aaPredicted RBP18.5■□□□□ 0.55
CCDC28A-202ENST00000611852 TBC1D8BQ0IIM8 1120 aa18.5■□□□□ 0.55
CCDC28A-202ENST00000611852 OTUD6AQ7L8S5 288 aa18.5■□□□□ 0.55
CCDC28A-202ENST00000611852 RSPH3Q86UC2 560 aa18.5■□□□□ 0.55
CCDC28A-202ENST00000611852 KIAA0319LQ8IZA0 1049 aa18.5■□□□□ 0.55
CCDC28A-202ENST00000611852 ZNF579Q8NAF0 562 aaKnown RBP18.5■□□□□ 0.55
CCDC28A-202ENST00000611852 SNX29Q8TEQ0 813 aa18.5■□□□□ 0.55
CCDC28A-202ENST00000611852 VWCEQ96DN2 955 aa18.5■□□□□ 0.55
CCDC28A-202ENST00000611852 ZNF396Q96N95 335 aaPredicted RBP18.5■□□□□ 0.55
CCDC28A-202ENST00000611852 UBE2OQ9C0C9 1292 aaKnown RBP18.5■□□□□ 0.55
CCDC28A-202ENST00000611852 PARNO95453 639 aaKnown RBP18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 MUTP22033 750 aa18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 RFC2P35250 354 aa18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 DDIT3P35638 169 aa18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 GRIN1Q05586 938 aa18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 MBTPS1Q14703 1052 aa18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 GPNMBQ14956 572 aa18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 SLC39A14Q15043 492 aa18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 ECM1Q16610 540 aa18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 FAM26DQ5JW98 314 aa18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 KRT79Q5XKE5 535 aa18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 EFCAB12Q6NXP0 572 aa18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 POTEGQ6S5H5 508 aa18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 C16orf59Q7L2K0 433 aa18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 METTL13Q8N6R0 699 aa18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 LINC01465Q8N7H1 131 aa18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 PIGOQ8TEQ8 1089 aa18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 CEP170P1Q96L14 293 aa18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 MMTAG2Q9BU76 263 aaKnown RBP18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 IL23AQ9NPF7 189 aa18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 ANKEF1Q9NU02 776 aa18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 TFIP11Q9UBB9 837 aaKnown RBP18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 DAXXQ9UER7 740 aaPredicted RBP18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 COLQQ9Y215 455 aaPredicted RBP18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 MORC2Q9Y6X9 1032 aaPredicted RBP18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 A0A087WWV3 80 aa18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 IGKV6-21A0A0C4DH24 114 aa18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 CHRNA1P02708 482 aa18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 XRCC6P12956 609 aaKnown RBP eCLIP18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 MARCKSP29966 332 aaPredicted RBP18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 FOXD4L6Q3SYB3 417 aaPredicted RBP18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 XKR9Q5GH70 373 aa18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 FOXD4L3Q6VB84 417 aaPredicted RBP18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 DEFB128Q7Z7B8 93 aa18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 NME8Q8N427 588 aa18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 AK8Q96MA6 479 aa18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 PPME1Q9Y570 386 aa18.49■□□□□ 0.55
CCDC28A-202ENST00000611852 NBNO60934 754 aa18.48■□□□□ 0.55
CCDC28A-202ENST00000611852 MAFO75444 373 aaPredicted RBP18.48■□□□□ 0.55
CCDC28A-202ENST00000611852 ACRP10323 421 aa18.48■□□□□ 0.55
CCDC28A-202ENST00000611852 LONP1P36776 959 aaKnown RBP18.48■□□□□ 0.55
CCDC28A-202ENST00000611852 RARRES1P49788 294 aa18.48■□□□□ 0.55
CCDC28A-202ENST00000611852 CLCN3P51790 818 aa18.48■□□□□ 0.55
CCDC28A-202ENST00000611852 MRPS6P82932 125 aaKnown RBP18.48■□□□□ 0.55
CCDC28A-202ENST00000611852 MGAT3Q09327 533 aa18.48■□□□□ 0.55
CCDC28A-202ENST00000611852 RPUSD2Q8IZ73 545 aaKnown RBP18.48■□□□□ 0.55
CCDC28A-202ENST00000611852 LRRC71Q8N4P6 559 aa18.48■□□□□ 0.55
CCDC28A-202ENST00000611852 LINC00301Q8NCQ3 95 aa18.48■□□□□ 0.55
CCDC28A-202ENST00000611852 NACC1Q96RE7 527 aa18.48■□□□□ 0.55
CCDC28A-202ENST00000611852 DHX33Q9H6R0 707 aaKnown RBP18.48■□□□□ 0.55
CCDC28A-202ENST00000611852 SUGCTQ9HAC7 445 aa18.48■□□□□ 0.55
CCDC28A-202ENST00000611852 FBXO2Q9UK22 296 aaPredicted RBP18.48■□□□□ 0.55
CCDC28A-202ENST00000611852 SRPRBQ9Y5M8 271 aaKnown RBP18.48■□□□□ 0.55
CCDC28A-202ENST00000611852 TET1Q8NFU7 2136 aa18.47■□□□□ 0.55
CCDC28A-202ENST00000611852 ARID2Q68CP9 1835 aa18.47■□□□□ 0.55
CCDC28A-202ENST00000611852 TMOD1P28289 359 aa18.47■□□□□ 0.55
CCDC28A-202ENST00000611852 TMEM62Q0P6H9 643 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms