RNA–Protein interactions for RNA: ENST00000601816.3

PNKP-216, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 682 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-216ENST00000601816 NECAB1Q8N987 351 aa29.42■■■□□ 2.3
PNKP-216ENST00000601816 WASF1Q92558 559 aa29.42■■■□□ 2.3
PNKP-216ENST00000601816 C17orf80Q9BSJ5 609 aa29.42■■■□□ 2.3
PNKP-216ENST00000601816 UNC45AQ9H3U1 944 aa29.42■■■□□ 2.3
PNKP-216ENST00000601816 COL4A6Q14031 1691 aa29.41■■■□□ 2.3
PNKP-216ENST00000601816 CCDC194A0A1B0GVG4 234 aa29.41■■■□□ 2.3
PNKP-216ENST00000601816 DTNBO60941 627 aa29.41■■■□□ 2.3
PNKP-216ENST00000601816 SEC24BO95487 1268 aa29.41■■■□□ 2.3
PNKP-216ENST00000601816 C22orf31O95567 290 aa29.41■■■□□ 2.3
PNKP-216ENST00000601816 NEK4P51957 841 aa29.41■■■□□ 2.3
PNKP-216ENST00000601816 ME3Q16798 604 aa29.41■■■□□ 2.3
PNKP-216ENST00000601816 INF2Q27J81 1249 aa29.41■■■□□ 2.3
PNKP-216ENST00000601816 FBXO22Q8NEZ5 403 aa29.41■■■□□ 2.3
PNKP-216ENST00000601816 GJA10Q969M2 543 aa29.41■■■□□ 2.3
PNKP-216ENST00000601816 MBOAT7Q96N66 472 aa29.41■■■□□ 2.3
PNKP-216ENST00000601816 SAMD11Q96NU1 681 aa29.41■■■□□ 2.3
PNKP-216ENST00000601816 FTHL17Q9BXU8 183 aa29.41■■■□□ 2.3
PNKP-216ENST00000601816 PSMD10O75832 226 aa29.4■■■□□ 2.3
PNKP-216ENST00000601816 RDM1Q8NG50 284 aa29.4■■■□□ 2.3
PNKP-216ENST00000601816 SYMPKQ92797 1274 aaKnown RBP29.4■■■□□ 2.3
PNKP-216ENST00000601816 GTF3C6Q969F1 213 aa29.4■■■□□ 2.3
PNKP-216ENST00000601816 GJB4Q9NTQ9 266 aa29.4■■■□□ 2.3
PNKP-216ENST00000601816 LMCD1Q9NZU5 365 aa29.4■■■□□ 2.3
PNKP-216ENST00000601816 DDX25Q9UHL0 483 aaKnown RBP29.4■■■□□ 2.3
PNKP-216ENST00000601816 PADI3Q9ULW8 664 aa29.4■■■□□ 2.3
PNKP-216ENST00000601816 GINS2Q9Y248 185 aa29.4■■■□□ 2.3
PNKP-216ENST00000601816 MYH9P35579 1960 aaKnown RBP29.4■■■□□ 2.3
PNKP-216ENST00000601816 PRRC2BQ5JSZ5 2229 aaKnown RBP29.39■■■□□ 2.3
PNKP-216ENST00000601816 LARGE1O95461 756 aa29.39■■■□□ 2.3
PNKP-216ENST00000601816 OATP04181 439 aa29.39■■■□□ 2.3
PNKP-216ENST00000601816 PRKCEQ02156 737 aa29.39■■■□□ 2.3
PNKP-216ENST00000601816 LETM2Q2VYF4 491 aa29.39■■■□□ 2.3
PNKP-216ENST00000601816 METTL13Q8N6R0 699 aa29.39■■■□□ 2.3
PNKP-216ENST00000601816 ZNF862O60290 1169 aa29.38■■■□□ 2.29
PNKP-216ENST00000601816 MIER3Q7Z3K6 550 aa29.38■■■□□ 2.29
PNKP-216ENST00000601816 NEK8Q86SG6 692 aa29.38■■■□□ 2.29
PNKP-216ENST00000601816 ETNPPLQ8TBG4 499 aa29.38■■■□□ 2.29
PNKP-216ENST00000601816 LINC01599Q8WXQ3 324 aa29.38■■■□□ 2.29
PNKP-216ENST00000601816 NRBP2Q9NSY0 501 aa29.38■■■□□ 2.29
PNKP-216ENST00000601816 CUL9Q8IWT3 2517 aa29.37■■■□□ 2.29
PNKP-216ENST00000601816 MAGEB2O15479 319 aa29.37■■■□□ 2.29
PNKP-216ENST00000601816 MRPS5P82675 430 aaKnown RBP29.37■■■□□ 2.29
PNKP-216ENST00000601816 UGCGQ16739 394 aa29.37■■■□□ 2.29
PNKP-216ENST00000601816 EPC2Q52LR7 807 aa29.37■■■□□ 2.29
PNKP-216ENST00000601816 ASB2Q96Q27 587 aa29.37■■■□□ 2.29
PNKP-216ENST00000601816 SLC37A4O43826 429 aa29.36■■■□□ 2.29
PNKP-216ENST00000601816 NFX1Q12986 1120 aaKnown RBP29.36■■■□□ 2.29
PNKP-216ENST00000601816 TMEM266Q2M3C6 531 aa29.36■■■□□ 2.29
PNKP-216ENST00000601816 FIBCD1Q8N539 461 aa29.36■■■□□ 2.29
PNKP-216ENST00000601816 OXER1Q8TDS5 423 aa29.36■■■□□ 2.29
PNKP-216ENST00000601816 RPS6KA5O75582 802 aa29.35■■■□□ 2.29
PNKP-216ENST00000601816 FDPSP14324 419 aaKnown RBP29.35■■■□□ 2.29
PNKP-216ENST00000601816 GCFC2P16383 781 aaKnown RBP29.35■■■□□ 2.29
PNKP-216ENST00000601816 ODR4Q5SWX8 454 aa29.35■■■□□ 2.29
PNKP-216ENST00000601816 B3GNT9Q6UX72 402 aa29.35■■■□□ 2.29
PNKP-216ENST00000601816 PIK3AP1Q6ZUJ8 805 aa29.35■■■□□ 2.29
PNKP-216ENST00000601816 RTN4RL1Q86UN2 441 aaPredicted RBP29.35■■■□□ 2.29
PNKP-216ENST00000601816 TMEM192Q8IY95 271 aa29.35■■■□□ 2.29
PNKP-216ENST00000601816 PPP1R16BQ96T49 567 aa29.35■■■□□ 2.29
PNKP-216ENST00000601816 CDHR5Q9HBB8 845 aa29.35■■■□□ 2.29
PNKP-216ENST00000601816 ERVK-5Q9HDB9 667 aa29.35■■■□□ 2.29
PNKP-216ENST00000601816 ADGRA3Q8IWK6 1321 aa29.35■■■□□ 2.29
PNKP-216ENST00000601816 VTNP04004 478 aa29.34■■■□□ 2.29
PNKP-216ENST00000601816 TMOD1P28289 359 aa29.34■■■□□ 2.29
PNKP-216ENST00000601816 CLCN3P51790 818 aa29.34■■■□□ 2.29
PNKP-216ENST00000601816 CRYBB1P53674 252 aaPredicted RBP29.34■■■□□ 2.29
PNKP-216ENST00000601816 KIZQ2M2Z5 673 aa29.34■■■□□ 2.29
PNKP-216ENST00000601816 PPP4R3AQ6IN85 833 aa29.34■■■□□ 2.29
PNKP-216ENST00000601816 FAM43BQ6ZT52 329 aaPredicted RBP29.34■■■□□ 2.29
PNKP-216ENST00000601816 NPAS4Q8IUM7 802 aa29.34■■■□□ 2.29
PNKP-216ENST00000601816 NSUN7Q8NE18 718 aaKnown RBP29.34■■■□□ 2.29
PNKP-216ENST00000601816 TMEM40Q8WWA1 233 aa29.34■■■□□ 2.29
PNKP-216ENST00000601816 MAP7D2Q96T17 732 aa29.34■■■□□ 2.29
PNKP-216ENST00000601816 NAP1L4Q99733 375 aaKnown RBP29.34■■■□□ 2.29
PNKP-216ENST00000601816 BRMS1Q9HCU9 246 aa29.34■■■□□ 2.29
PNKP-216ENST00000601816 NOC2LQ9Y3T9 749 aaKnown RBP29.34■■■□□ 2.29
PNKP-216ENST00000601816 KRT2P35908 639 aa29.33■■■□□ 2.29
PNKP-216ENST00000601816 EFCAB12Q6NXP0 572 aa29.33■■■□□ 2.29
PNKP-216ENST00000601816 IL27Q8NEV9 243 aa29.33■■■□□ 2.29
PNKP-216ENST00000601816 FAM20AQ96MK3 541 aa29.33■■■□□ 2.29
PNKP-216ENST00000601816 OSMRQ99650 979 aa29.33■■■□□ 2.29
PNKP-216ENST00000601816 TMX1Q9H3N1 280 aa29.33■■■□□ 2.29
PNKP-216ENST00000601816 RC3H2Q9HBD1 1191 aaKnown RBP29.33■■■□□ 2.29
PNKP-216ENST00000601816 AKT3Q9Y243 479 aa29.33■■■□□ 2.29
PNKP-216ENST00000601816 TTC3P53804 2025 aa29.33■■■□□ 2.29
PNKP-216ENST00000601816 EVPLQ92817 2033 aa29.32■■■□□ 2.28
PNKP-216ENST00000601816 WDR81Q562E7 1941 aa29.32■■■□□ 2.28
PNKP-216ENST00000601816 LOXHD1Q8IVV2 1947 aa29.32■■■□□ 2.28
PNKP-216ENST00000601816 GPR182O15218 404 aa29.32■■■□□ 2.28
PNKP-216ENST00000601816 CCNT1O60563 726 aaKnown RBP29.32■■■□□ 2.28
PNKP-216ENST00000601816 DGKIO75912 1065 aa29.32■■■□□ 2.28
PNKP-216ENST00000601816 STAG3L1P0CL83 205 aa29.32■■■□□ 2.28
PNKP-216ENST00000601816 BTG3Q14201 252 aaPredicted RBP29.32■■■□□ 2.28
PNKP-216ENST00000601816 LRRC71Q8N4P6 559 aa29.32■■■□□ 2.28
PNKP-216ENST00000601816 ZNF689Q96CS4 500 aaPredicted RBP29.32■■■□□ 2.28
PNKP-216ENST00000601816 KCNMB3Q9NPA1 279 aa29.32■■■□□ 2.28
PNKP-216ENST00000601816 SEPT9Q9UHD8 586 aaPredicted RBP29.32■■■□□ 2.28
PNKP-216ENST00000601816 COG5Q9UP83 839 aa29.32■■■□□ 2.28
PNKP-216ENST00000601816 H3BNC9 293 aa29.31■■■□□ 2.28
PNKP-216ENST00000601816 GPR32O75388 356 aa29.31■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms