RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 IKZF4Q9H2S9 585 aa19.98■□□□□ 0.79
UPF1-210ENST00000600689 ACTR5Q9H9F9 607 aaPredicted RBP19.98■□□□□ 0.79
UPF1-210ENST00000600689 BMP2KQ9NSY1 1161 aaPredicted RBP19.98■□□□□ 0.79
UPF1-210ENST00000600689 RBAK-RBAKDNI3L0D1 243 aa19.98■□□□□ 0.79
UPF1-210ENST00000600689 TRIM37O94972 964 aa19.98■□□□□ 0.79
UPF1-210ENST00000600689 HSPA1LP34931 641 aa19.98■□□□□ 0.79
UPF1-210ENST00000600689 TMC3Q7Z5M5 1100 aa19.98■□□□□ 0.79
UPF1-210ENST00000600689 GPBP1Q86WP2 473 aa19.98■□□□□ 0.79
UPF1-210ENST00000600689 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.98■□□□□ 0.791e-6■□□□□ 11.3
UPF1-210ENST00000600689 ATXN2Q99700 1313 aaKnown RBP19.97■□□□□ 0.79
UPF1-210ENST00000600689 GFPT2O94808 682 aa19.97■□□□□ 0.79
UPF1-210ENST00000600689 BAG3O95817 575 aa19.97■□□□□ 0.79
UPF1-210ENST00000600689 MMEP08473 750 aa19.97■□□□□ 0.79
UPF1-210ENST00000600689 KRT13P13646 458 aa19.97■□□□□ 0.79
UPF1-210ENST00000600689 CUL1Q13616 776 aa19.97■□□□□ 0.79
UPF1-210ENST00000600689 CRY2Q49AN0 593 aa19.97■□□□□ 0.79
UPF1-210ENST00000600689 SCFD2Q8WU76 684 aa19.97■□□□□ 0.79
UPF1-210ENST00000600689 AJAP1Q9UKB5 411 aaPredicted RBP19.97■□□□□ 0.79
UPF1-210ENST00000600689 UTP11Q9Y3A2 253 aaKnown RBP19.97■□□□□ 0.79
UPF1-210ENST00000600689 TMEM110-MUSTN1A8MSY1 372 aa19.97■□□□□ 0.79
UPF1-210ENST00000600689 F8W031 263 aaPredicted RBP19.97■□□□□ 0.79
UPF1-210ENST00000600689 CLIC2O15247 247 aa19.97■□□□□ 0.79
UPF1-210ENST00000600689 RASA1P20936 1047 aa19.97■□□□□ 0.79
UPF1-210ENST00000600689 IFI35P80217 286 aaPredicted RBP19.97■□□□□ 0.79
UPF1-210ENST00000600689 LRRC14Q15048 493 aa19.97■□□□□ 0.79
UPF1-210ENST00000600689 GALNT17Q6IS24 598 aa19.97■□□□□ 0.79
UPF1-210ENST00000600689 TATDN2Q93075 761 aa19.97■□□□□ 0.79
UPF1-210ENST00000600689 CEP95Q96GE4 821 aa19.97■□□□□ 0.79
UPF1-210ENST00000600689 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.97■□□□□ 0.791e-9■■■■■ 87.7
UPF1-210ENST00000600689 STK17AQ9UEE5 414 aa19.97■□□□□ 0.79
UPF1-210ENST00000600689 GGA1Q9UJY5 639 aa19.97■□□□□ 0.79
UPF1-210ENST00000600689 NAGPAQ9UK23 515 aa19.97■□□□□ 0.79
UPF1-210ENST00000600689 HDAC9Q9UKV0 1011 aa19.97■□□□□ 0.79
UPF1-210ENST00000600689 SLC16A2P36021 539 aa19.96■□□□□ 0.79
UPF1-210ENST00000600689 CASP5P51878 434 aa19.96■□□□□ 0.79
UPF1-210ENST00000600689 MIEF2Q96C03 454 aa19.96■□□□□ 0.79
UPF1-210ENST00000600689 RIC8AQ9NPQ8 531 aa19.96■□□□□ 0.79
UPF1-210ENST00000600689 EMILIN3Q9NT22 766 aa19.96■□□□□ 0.79
UPF1-210ENST00000600689 F8VZ95 297 aa19.96■□□□□ 0.79
UPF1-210ENST00000600689 MFSD14BQ5SR56 506 aa19.96■□□□□ 0.79
UPF1-210ENST00000600689 LRIG3Q6UXM1 1119 aa19.96■□□□□ 0.79
UPF1-210ENST00000600689 CCDC25Q86WR0 208 aa19.96■□□□□ 0.79
UPF1-210ENST00000600689 CHMP6Q96FZ7 201 aa19.96■□□□□ 0.79
UPF1-210ENST00000600689 XPO6Q96QU8 1125 aaKnown RBP19.96■□□□□ 0.79
UPF1-210ENST00000600689 AZI2Q9H6S1 392 aa19.96■□□□□ 0.79
UPF1-210ENST00000600689 DRD4P21917 467 aa19.96■□□□□ 0.79
UPF1-210ENST00000600689 ADCY1Q08828 1119 aa19.96■□□□□ 0.79
UPF1-210ENST00000600689 BIRC3Q13489 604 aa19.96■□□□□ 0.79
UPF1-210ENST00000600689 OTUD6AQ7L8S5 288 aa19.96■□□□□ 0.79
UPF1-210ENST00000600689 TRIM59Q8IWR1 403 aa19.96■□□□□ 0.79
UPF1-210ENST00000600689 LRRC34Q8IZ02 419 aa19.96■□□□□ 0.79
UPF1-210ENST00000600689 CCDC197Q8NCU1 140 aa19.96■□□□□ 0.79
UPF1-210ENST00000600689 TPCN2Q8NHX9 752 aa19.96■□□□□ 0.79
UPF1-210ENST00000600689 RBM46Q8TBY0 533 aaKnown RBP19.96■□□□□ 0.79
UPF1-210ENST00000600689 DNAJC19Q96DA6 116 aa19.96■□□□□ 0.79
UPF1-210ENST00000600689 MTMR9Q96QG7 549 aa19.96■□□□□ 0.79
UPF1-210ENST00000600689 FMO2Q99518 471 aa19.96■□□□□ 0.79
UPF1-210ENST00000600689 RAB34Q9BZG1 259 aa19.96■□□□□ 0.79
UPF1-210ENST00000600689 NOD2Q9HC29 1040 aa19.96■□□□□ 0.79
UPF1-210ENST00000600689 PCDHB13Q9Y5F0 798 aa19.96■□□□□ 0.79
UPF1-210ENST00000600689 FOXO6A8MYZ6 492 aa19.95■□□□□ 0.78
UPF1-210ENST00000600689 C6orf229H3BNL8 230 aa19.95■□□□□ 0.78
UPF1-210ENST00000600689 ONECUT3O60422 494 aaPredicted RBP19.95■□□□□ 0.78
UPF1-210ENST00000600689 UCHL3P15374 230 aa19.95■□□□□ 0.78
UPF1-210ENST00000600689 CERKQ8TCT0 537 aa19.95■□□□□ 0.78
UPF1-210ENST00000600689 PRMT1Q99873 361 aaKnown RBP19.95■□□□□ 0.78
UPF1-210ENST00000600689 PAGR1Q9BTK6 254 aa19.95■□□□□ 0.78
UPF1-210ENST00000600689 TMOD4Q9NZQ9 345 aa19.95■□□□□ 0.78
UPF1-210ENST00000600689 TMEM59LQ9UK28 342 aa19.95■□□□□ 0.78
UPF1-210ENST00000600689 UBR3Q6ZT12 1888 aa19.95■□□□□ 0.78
UPF1-210ENST00000600689 RIMBP2O15034 1052 aa19.95■□□□□ 0.78
UPF1-210ENST00000600689 GSTO1P78417 241 aa19.95■□□□□ 0.78
UPF1-210ENST00000600689 CCDC63Q8NA47 563 aa19.95■□□□□ 0.78
UPF1-210ENST00000600689 SCFD1Q8WVM8 642 aa19.95■□□□□ 0.78
UPF1-210ENST00000600689 STK38LQ9Y2H1 464 aa19.95■□□□□ 0.78
UPF1-210ENST00000600689 MYBP10242 640 aa19.94■□□□□ 0.78
UPF1-210ENST00000600689 ADCY7P51828 1080 aa19.94■□□□□ 0.78
UPF1-210ENST00000600689 KIF2BQ8N4N8 673 aa19.94■□□□□ 0.78
UPF1-210ENST00000600689 CCDC26Q8TAB7 109 aa19.94■□□□□ 0.78
UPF1-210ENST00000600689 TBC1D16Q8TBP0 767 aa19.94■□□□□ 0.78
UPF1-210ENST00000600689 NUCKS1Q9H1E3 243 aaKnown RBP19.94■□□□□ 0.78
UPF1-210ENST00000600689 GANQ9H2C0 597 aa19.94■□□□□ 0.78
UPF1-210ENST00000600689 DDX25Q9UHL0 483 aaKnown RBP19.94■□□□□ 0.78
UPF1-210ENST00000600689 PCDHA12Q9UN75 941 aa19.94■□□□□ 0.78
UPF1-210ENST00000600689 CETN3O15182 167 aa19.94■□□□□ 0.78
UPF1-210ENST00000600689 H2AFZP0C0S5 128 aa19.94■□□□□ 0.78
UPF1-210ENST00000600689 PPP4CP60510 307 aa19.94■□□□□ 0.78
UPF1-210ENST00000600689 ELF3P78545 371 aaPredicted RBP19.94■□□□□ 0.78
UPF1-210ENST00000600689 H2AFVQ71UI9 128 aa19.94■□□□□ 0.78
UPF1-210ENST00000600689 IRF2BP2Q7Z5L9 587 aa19.94■□□□□ 0.78
UPF1-210ENST00000600689 TEX11Q8IYF3 940 aa19.94■□□□□ 0.78
UPF1-210ENST00000600689 CCT6BQ92526 530 aa19.94■□□□□ 0.78
UPF1-210ENST00000600689 PBKQ96KB5 322 aa19.94■□□□□ 0.78
UPF1-210ENST00000600689 A1CFQ9NQ94 594 aaKnown RBP19.94■□□□□ 0.78
UPF1-210ENST00000600689 TRPC5Q9UL62 973 aaPredicted RBP19.94■□□□□ 0.78
UPF1-210ENST00000600689 SFI1A8K8P3 1242 aa19.94■□□□□ 0.78
UPF1-210ENST00000600689 ADRA2BP18089 450 aa19.94■□□□□ 0.78
UPF1-210ENST00000600689 EXOC3L4Q17RC7 722 aa19.94■□□□□ 0.78
UPF1-210ENST00000600689 RBM17Q96I25 401 aaKnown RBP19.94■□□□□ 0.78
UPF1-210ENST00000600689 QTRT2Q9H974 415 aaKnown RBP19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms