RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 WBP1LQ9NX94 342 aa16.38■□□□□ 0.21
SHKBP1-211ENST00000595945 GDAQ9Y2T3 454 aa16.38■□□□□ 0.21
SHKBP1-211ENST00000595945 PCDHA2Q9Y5H9 948 aa16.38■□□□□ 0.21
SHKBP1-211ENST00000595945 A6NJR5 290 aa16.37■□□□□ 0.21
SHKBP1-211ENST00000595945 KRT18P05783 430 aaKnown RBP16.37■□□□□ 0.21
SHKBP1-211ENST00000595945 MMP3P08254 477 aa16.37■□□□□ 0.21
SHKBP1-211ENST00000595945 IDEP14735 1019 aa16.37■□□□□ 0.21
SHKBP1-211ENST00000595945 ZNF131P52739 623 aa16.37■□□□□ 0.21
SHKBP1-211ENST00000595945 PRMT2P55345 433 aa16.37■□□□□ 0.21
SHKBP1-211ENST00000595945 CACNB1Q02641 598 aaPredicted RBP16.37■□□□□ 0.21
SHKBP1-211ENST00000595945 STK4Q13043 487 aa16.37■□□□□ 0.21
SHKBP1-211ENST00000595945 PSMD2Q13200 908 aa16.37■□□□□ 0.21
SHKBP1-211ENST00000595945 ARHGEF6Q15052 776 aa16.37■□□□□ 0.21
SHKBP1-211ENST00000595945 TARBP2Q15633 366 aaKnown RBP16.37■□□□□ 0.21
SHKBP1-211ENST00000595945 XKR9Q5GH70 373 aa16.37■□□□□ 0.21
SHKBP1-211ENST00000595945 ADSSL1Q8N142 457 aa16.37■□□□□ 0.21
SHKBP1-211ENST00000595945 DNAJC5GQ8N7S2 189 aa16.37■□□□□ 0.21
SHKBP1-211ENST00000595945 KIAA0895Q8NCT3 520 aa16.37■□□□□ 0.21
SHKBP1-211ENST00000595945 OR6J1Q8NGC5 347 aa16.37■□□□□ 0.21
SHKBP1-211ENST00000595945 FAM167AQ96KS9 214 aa16.37■□□□□ 0.21
SHKBP1-211ENST00000595945 TIPINQ9BVW5 301 aa16.37■□□□□ 0.21
SHKBP1-211ENST00000595945 SMARCAD1Q9H4L7 1026 aa16.37■□□□□ 0.21
SHKBP1-211ENST00000595945 AZI2Q9H6S1 392 aa16.37■□□□□ 0.21
SHKBP1-211ENST00000595945 CYP26B1Q9NR63 512 aa16.37■□□□□ 0.21
SHKBP1-211ENST00000595945 ODF2LQ9ULJ1 636 aa16.37■□□□□ 0.21
SHKBP1-211ENST00000595945 FRMPD3Q5JV73 1810 aa16.37■□□□□ 0.21
SHKBP1-211ENST00000595945 RSPH10B2B2RC85 870 aa16.36■□□□□ 0.21
SHKBP1-211ENST00000595945 PPFIA4O75335 1185 aa16.36■□□□□ 0.21
SHKBP1-211ENST00000595945 LGALS2P05162 132 aa16.36■□□□□ 0.21
SHKBP1-211ENST00000595945 RSPH10BP0C881 870 aa16.36■□□□□ 0.21
SHKBP1-211ENST00000595945 AKR1A1P14550 325 aa16.36■□□□□ 0.21
SHKBP1-211ENST00000595945 GAP43P17677 238 aa16.36■□□□□ 0.21
SHKBP1-211ENST00000595945 ERCC5P28715 1186 aaPredicted RBP16.36■□□□□ 0.21
SHKBP1-211ENST00000595945 SLC26A2P50443 739 aa16.36■□□□□ 0.21
SHKBP1-211ENST00000595945 CACNB2Q08289 660 aaPredicted RBP16.36■□□□□ 0.21
SHKBP1-211ENST00000595945 TRIM32Q13049 653 aa16.36■□□□□ 0.21
SHKBP1-211ENST00000595945 PLCB4Q15147 1175 aa16.36■□□□□ 0.21
SHKBP1-211ENST00000595945 MAP3K21Q5TCX8 1036 aa16.36■□□□□ 0.21
SHKBP1-211ENST00000595945 TRIM50Q86XT4 487 aa16.36■□□□□ 0.21
SHKBP1-211ENST00000595945 DHX40Q8IX18 779 aaKnown RBP16.36■□□□□ 0.21
SHKBP1-211ENST00000595945 SMYD4Q8IYR2 804 aaPredicted RBP16.36■□□□□ 0.21
SHKBP1-211ENST00000595945 DAW1Q8N136 415 aa16.36■□□□□ 0.21
SHKBP1-211ENST00000595945 RNF214Q8ND24 703 aa16.36■□□□□ 0.21
SHKBP1-211ENST00000595945 PXYLP1Q8TE99 480 aa16.36■□□□□ 0.21
SHKBP1-211ENST00000595945 CEP170P1Q96L14 293 aa16.36■□□□□ 0.21
SHKBP1-211ENST00000595945 NAT10Q9H0A0 1025 aaKnown RBP16.36■□□□□ 0.21
SHKBP1-211ENST00000595945 GRPEL1Q9HAV7 217 aa16.36■□□□□ 0.21
SHKBP1-211ENST00000595945 NRBP2Q9NSY0 501 aa16.36■□□□□ 0.21
SHKBP1-211ENST00000595945 SEPT9Q9UHD8 586 aaPredicted RBP16.36■□□□□ 0.21
SHKBP1-211ENST00000595945 DACH1Q9UI36 760 aa16.36■□□□□ 0.21
SHKBP1-211ENST00000595945 PPME1Q9Y570 386 aa16.36■□□□□ 0.21
SHKBP1-211ENST00000595945 TRIP12Q14669 1992 aaPredicted RBP16.36■□□□□ 0.21
SHKBP1-211ENST00000595945 SCN10AQ9Y5Y9 1956 aa16.36■□□□□ 0.21
SHKBP1-211ENST00000595945 DYNC1LI2O43237 492 aaPredicted RBP16.35■□□□□ 0.21
SHKBP1-211ENST00000595945 ADCY3O60266 1144 aa16.35■□□□□ 0.21
SHKBP1-211ENST00000595945 USO1O60763 962 aaKnown RBP16.35■□□□□ 0.21
SHKBP1-211ENST00000595945 HIP1RO75146 1068 aa16.35■□□□□ 0.21
SHKBP1-211ENST00000595945 DUSP11O75319 330 aaKnown RBP16.35■□□□□ 0.21
SHKBP1-211ENST00000595945 HMGCRP04035 888 aa16.35■□□□□ 0.21
SHKBP1-211ENST00000595945 ELNP15502 786 aa16.35■□□□□ 0.21
SHKBP1-211ENST00000595945 PRCPP42785 496 aa16.35■□□□□ 0.21
SHKBP1-211ENST00000595945 MRE11P49959 708 aa16.35■□□□□ 0.21
SHKBP1-211ENST00000595945 RAD51AP2Q09MP3 1159 aa16.35■□□□□ 0.21
SHKBP1-211ENST00000595945 UVSSAQ2YD98 709 aa16.35■□□□□ 0.21
SHKBP1-211ENST00000595945 FAM26FQ5R3K3 315 aa16.35■□□□□ 0.21
SHKBP1-211ENST00000595945 TLK2Q86UE8 772 aa16.35■□□□□ 0.21
SHKBP1-211ENST00000595945 ATP8B4Q8TF62 1192 aa16.35■□□□□ 0.21
SHKBP1-211ENST00000595945 BBXQ8WY36 941 aaPredicted RBP16.35■□□□□ 0.21
SHKBP1-211ENST00000595945 GLG1Q92896 1179 aa16.35■□□□□ 0.21
SHKBP1-211ENST00000595945 HPS3Q969F9 1004 aa16.35■□□□□ 0.21
SHKBP1-211ENST00000595945 LENG1Q96BZ8 264 aaPredicted RBP16.35■□□□□ 0.21
SHKBP1-211ENST00000595945 MED15Q96RN5 788 aa16.35■□□□□ 0.21
SHKBP1-211ENST00000595945 SH2D3AQ9BRG2 576 aa16.35■□□□□ 0.21
SHKBP1-211ENST00000595945 C16orf70Q9BSU1 422 aa16.35■□□□□ 0.21
SHKBP1-211ENST00000595945 UPF3AQ9H1J1 476 aaKnown RBP16.35■□□□□ 0.21
SHKBP1-211ENST00000595945 XPNPEP1Q9NQW7 623 aa16.35■□□□□ 0.21
SHKBP1-211ENST00000595945 COL4A3BPQ9Y5P4 624 aa16.35■□□□□ 0.21
SHKBP1-211ENST00000595945 SIP14410 1827 aa16.34■□□□□ 0.21
SHKBP1-211ENST00000595945 IKBKBO14920 756 aa16.34■□□□□ 0.21
SHKBP1-211ENST00000595945 TBCAO75347 108 aaKnown RBP16.34■□□□□ 0.21
SHKBP1-211ENST00000595945 NKX3-2P78367 333 aa16.34■□□□□ 0.21
SHKBP1-211ENST00000595945 NCAPHQ15003 741 aa16.34■□□□□ 0.21
SHKBP1-211ENST00000595945 HERC4Q5GLZ8 1057 aaPredicted RBP16.34■□□□□ 0.21
SHKBP1-211ENST00000595945 SFR1Q86XK3 245 aa16.34■□□□□ 0.21
SHKBP1-211ENST00000595945 CCDC43Q96MW1 224 aaKnown RBP16.34■□□□□ 0.21
SHKBP1-211ENST00000595945 FIZ1Q96SL8 496 aa16.34■□□□□ 0.21
SHKBP1-211ENST00000595945 BEGAINQ9BUH8 593 aa16.34■□□□□ 0.21
SHKBP1-211ENST00000595945 SLC39A2Q9NP94 309 aa16.34■□□□□ 0.21
SHKBP1-211ENST00000595945 OLFML3Q9NRN5 406 aa16.34■□□□□ 0.21
SHKBP1-211ENST00000595945 TSKSQ9UJT2 592 aa16.34■□□□□ 0.21
SHKBP1-211ENST00000595945 ZBTB42B2RXF5 422 aa16.33■□□□□ 0.2
SHKBP1-211ENST00000595945 SEPT4O43236 478 aa16.33■□□□□ 0.2
SHKBP1-211ENST00000595945 DGAT1O75907 488 aa16.33■□□□□ 0.2
SHKBP1-211ENST00000595945 FAM13AO94988 1023 aa16.33■□□□□ 0.2
SHKBP1-211ENST00000595945 PRKAR2AP13861 404 aaKnown RBP16.33■□□□□ 0.2
SHKBP1-211ENST00000595945 RFC5P40937 340 aa16.33■□□□□ 0.2
SHKBP1-211ENST00000595945 PPP1R2P41236 205 aa16.33■□□□□ 0.2
SHKBP1-211ENST00000595945 DGKDQ16760 1214 aa16.33■□□□□ 0.2
SHKBP1-211ENST00000595945 MTERF2Q49AM1 385 aa16.33■□□□□ 0.2
SHKBP1-211ENST00000595945 EPM2AIP1Q7L775 607 aaPredicted RBP16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms