RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 KRT18P05783 430 aaKnown RBP16.2■□□□□ 0.18
SMARCA4-219ENST00000592604 HOXD13P35453 343 aa16.2■□□□□ 0.18
SMARCA4-219ENST00000592604 GIT2Q14161 759 aa16.2■□□□□ 0.18
SMARCA4-219ENST00000592604 TTBK2Q6IQ55 1244 aa16.2■□□□□ 0.18
SMARCA4-219ENST00000592604 TMC3Q7Z5M5 1100 aa16.2■□□□□ 0.18
SMARCA4-219ENST00000592604 CCDC13Q8IYE1 715 aa16.2■□□□□ 0.18
SMARCA4-219ENST00000592604 HES6Q96HZ4 224 aa16.2■□□□□ 0.18
SMARCA4-219ENST00000592604 GLT8D2Q9H1C3 349 aa16.2■□□□□ 0.18
SMARCA4-219ENST00000592604 SIX2Q9NPC8 291 aa16.2■□□□□ 0.18
SMARCA4-219ENST00000592604 FAM114A2Q9NRY5 505 aa16.2■□□□□ 0.18
SMARCA4-219ENST00000592604 AMACRQ9UHK6 382 aa16.2■□□□□ 0.18
SMARCA4-219ENST00000592604 DAPK3O43293 454 aa16.19■□□□□ 0.18
SMARCA4-219ENST00000592604 XRCC5P13010 732 aaKnown RBP16.19■□□□□ 0.18
SMARCA4-219ENST00000592604 ITGA4P13612 1032 aa16.19■□□□□ 0.18
SMARCA4-219ENST00000592604 POU5F1Q01860 360 aaKnown RBP16.19■□□□□ 0.18
SMARCA4-219ENST00000592604 SPDYCQ5MJ68 293 aa16.19■□□□□ 0.18
SMARCA4-219ENST00000592604 GPATCH4Q5T3I0 446 aaKnown RBP16.19■□□□□ 0.18
SMARCA4-219ENST00000592604 VPS36Q86VN1 386 aa16.19■□□□□ 0.18
SMARCA4-219ENST00000592604 METTL14Q9HCE5 456 aaKnown RBP16.19■□□□□ 0.18
SMARCA4-219ENST00000592604 TMCO5BA8MYB1 307 aa16.19■□□□□ 0.18
SMARCA4-219ENST00000592604 GPSM2P81274 684 aa16.19■□□□□ 0.18
SMARCA4-219ENST00000592604 DPP8Q6V1X1 898 aaPredicted RBP16.19■□□□□ 0.18
SMARCA4-219ENST00000592604 ARMC9Q7Z3E5 817 aa16.19■□□□□ 0.18
SMARCA4-219ENST00000592604 UBLCP1Q8WVY7 318 aaPredicted RBP16.19■□□□□ 0.18
SMARCA4-219ENST00000592604 CNOT8Q9UFF9 292 aaKnown RBP16.19■□□□□ 0.18
SMARCA4-219ENST00000592604 DDX3XO00571 662 aaKnown RBP eCLIP16.18■□□□□ 0.18
SMARCA4-219ENST00000592604 CALUO43852 315 aaPredicted RBP16.18■□□□□ 0.18
SMARCA4-219ENST00000592604 GFPT2O94808 682 aa16.18■□□□□ 0.18
SMARCA4-219ENST00000592604 MFSD14BQ5SR56 506 aa16.18■□□□□ 0.18
SMARCA4-219ENST00000592604 CCDC121Q6ZUS5 278 aa16.18■□□□□ 0.18
SMARCA4-219ENST00000592604 DNAAF5Q86Y56 855 aa16.18■□□□□ 0.18
SMARCA4-219ENST00000592604 SLFN12Q8IYM2 578 aa16.18■□□□□ 0.18
SMARCA4-219ENST00000592604 AHDC1Q5TGY3 1603 aaPredicted RBP16.18■□□□□ 0.18
SMARCA4-219ENST00000592604 GTPBP10A4D1E9 387 aaKnown RBP16.18■□□□□ 0.18
SMARCA4-219ENST00000592604 EIF6P56537 245 aaKnown RBP16.18■□□□□ 0.18
SMARCA4-219ENST00000592604 SATB1Q01826 763 aa16.18■□□□□ 0.18
SMARCA4-219ENST00000592604 BMT2Q1RMZ1 405 aa16.18■□□□□ 0.18
SMARCA4-219ENST00000592604 MOXD1Q6UVY6 613 aa16.18■□□□□ 0.18
SMARCA4-219ENST00000592604 GPATCH11Q8N954 259 aa16.18■□□□□ 0.18
SMARCA4-219ENST00000592604 SYT2Q8N9I0 419 aaPredicted RBP16.18■□□□□ 0.18
SMARCA4-219ENST00000592604 PROCA1Q8NCQ7 364 aaPredicted RBP16.18■□□□□ 0.18
SMARCA4-219ENST00000592604 ZHX3Q9H4I2 956 aa16.18■□□□□ 0.18
SMARCA4-219ENST00000592604 KLC4Q9NSK0 619 aa16.18■□□□□ 0.18
SMARCA4-219ENST00000592604 USP17L10C9JJH3 530 aa16.18■□□□□ 0.18
SMARCA4-219ENST00000592604 SLC16A3O15427 465 aaKnown RBP16.18■□□□□ 0.18
SMARCA4-219ENST00000592604 AKAP3O75969 853 aa16.18■□□□□ 0.18
SMARCA4-219ENST00000592604 ATP2B4P23634 1241 aa16.18■□□□□ 0.18
SMARCA4-219ENST00000592604 TMOD1P28289 359 aa16.18■□□□□ 0.18
SMARCA4-219ENST00000592604 SPIRE1Q08AE8 756 aa16.18■□□□□ 0.18
SMARCA4-219ENST00000592604 CLEC10AQ8IUN9 316 aa16.18■□□□□ 0.18
SMARCA4-219ENST00000592604 TBC1D22AQ8WUA7 517 aa16.18■□□□□ 0.18
SMARCA4-219ENST00000592604 TXLNGYQ9BZA5 131 aa16.18■□□□□ 0.18
SMARCA4-219ENST00000592604 AJAP1Q9UKB5 411 aaPredicted RBP16.18■□□□□ 0.18
SMARCA4-219ENST00000592604 NOVA2Q9UNW9 492 aaKnown RBP16.18■□□□□ 0.18
SMARCA4-219ENST00000592604 MYO3BQ8WXR4 1341 aa16.17■□□□□ 0.18
SMARCA4-219ENST00000592604 POTEFA5A3E0 1075 aa16.17■□□□□ 0.18
SMARCA4-219ENST00000592604 F8VZ95 297 aa16.17■□□□□ 0.18
SMARCA4-219ENST00000592604 GNPATO15228 680 aa16.17■□□□□ 0.18
SMARCA4-219ENST00000592604 TTI1O43156 1089 aa16.17■□□□□ 0.18
SMARCA4-219ENST00000592604 CCDC172P0C7W6 258 aa16.17■□□□□ 0.18
SMARCA4-219ENST00000592604 POTEIP0CG38 1075 aa16.17■□□□□ 0.18
SMARCA4-219ENST00000592604 QPCTQ16769 361 aa16.17■□□□□ 0.18
SMARCA4-219ENST00000592604 POTEGQ6S5H5 508 aa16.17■□□□□ 0.18
SMARCA4-219ENST00000592604 POTEEQ6S8J3 1075 aa16.17■□□□□ 0.18
SMARCA4-219ENST00000592604 DAAM2Q86T65 1068 aa16.17■□□□□ 0.18
SMARCA4-219ENST00000592604 CATSPER3Q86XQ3 398 aa16.17■□□□□ 0.18
SMARCA4-219ENST00000592604 SLC30A5Q8TAD4 765 aa16.17■□□□□ 0.18
SMARCA4-219ENST00000592604 RAPGEF5Q92565 580 aa16.17■□□□□ 0.18
SMARCA4-219ENST00000592604 SLC35C1Q96A29 364 aa16.17■□□□□ 0.18
SMARCA4-219ENST00000592604 OSBPL7Q9BZF2 842 aa16.17■□□□□ 0.18
SMARCA4-219ENST00000592604 TYW1Q9NV66 732 aaKnown RBP16.17■□□□□ 0.18
SMARCA4-219ENST00000592604 UTP11Q9Y3A2 253 aaKnown RBP16.17■□□□□ 0.18
SMARCA4-219ENST00000592604 CHUKO15111 745 aa16.17■□□□□ 0.18
SMARCA4-219ENST00000592604 PPFIA2O75334 1257 aa16.17■□□□□ 0.18
SMARCA4-219ENST00000592604 FERP16591 822 aa16.17■□□□□ 0.18
SMARCA4-219ENST00000592604 RPL13P26373 211 aaKnown RBP16.17■□□□□ 0.18
SMARCA4-219ENST00000592604 STAT3P40763 770 aa16.17■□□□□ 0.18
SMARCA4-219ENST00000592604 DHX9Q08211 1270 aaKnown RBP16.17■□□□□ 0.18
SMARCA4-219ENST00000592604 PTPROQ16827 1216 aa16.17■□□□□ 0.18
SMARCA4-219ENST00000592604 ODF2Q5BJF6 829 aa16.17■□□□□ 0.18
SMARCA4-219ENST00000592604 SFR1Q86XK3 245 aa16.17■□□□□ 0.18
SMARCA4-219ENST00000592604 ARHGEF1Q92888 912 aaKnown RBP16.17■□□□□ 0.18
SMARCA4-219ENST00000592604 SEC16BQ96JE7 1060 aa16.17■□□□□ 0.18
SMARCA4-219ENST00000592604 AMFRQ9UKV5 643 aa16.17■□□□□ 0.18
SMARCA4-219ENST00000592604 DIS3Q9Y2L1 958 aaKnown RBP16.17■□□□□ 0.18
SMARCA4-219ENST00000592604 UFL1O94874 794 aa16.16■□□□□ 0.18
SMARCA4-219ENST00000592604 SLC16A2P36021 539 aa16.16■□□□□ 0.18
SMARCA4-219ENST00000592604 EIF3BP55884 814 aaKnown RBP16.16■□□□□ 0.18
SMARCA4-219ENST00000592604 RPAINQ86UA6 219 aa16.16■□□□□ 0.18
SMARCA4-219ENST00000592604 OLIG1Q8TAK6 271 aa16.16■□□□□ 0.18
SMARCA4-219ENST00000592604 ZNF526Q8TF50 670 aaPredicted RBP16.16■□□□□ 0.18
SMARCA4-219ENST00000592604 TATDN2Q93075 761 aa16.16■□□□□ 0.18
SMARCA4-219ENST00000592604 TLCD1Q96CP7 247 aa16.16■□□□□ 0.18
SMARCA4-219ENST00000592604 REEP2Q9BRK0 252 aa16.16■□□□□ 0.18
SMARCA4-219ENST00000592604 SLC40A1Q9NP59 571 aa16.16■□□□□ 0.18
SMARCA4-219ENST00000592604 DAGLAQ9Y4D2 1042 aa16.16■□□□□ 0.18
SMARCA4-219ENST00000592604 USP17L15C9J2P7 530 aa16.16■□□□□ 0.18
SMARCA4-219ENST00000592604 USP17L13C9JLJ4 530 aa16.16■□□□□ 0.18
SMARCA4-219ENST00000592604 USP17L11C9JVI0 530 aa16.16■□□□□ 0.18
SMARCA4-219ENST00000592604 USP17L18D6R9N7 530 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms