RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 MTHFD1LQ6UB35 978 aa12.65□□□□□ -0.38
VPS4B-202ENST00000588059 CHD1LQ86WJ1 897 aa12.65□□□□□ -0.38
VPS4B-202ENST00000588059 UBALD2Q8IYN6 164 aa12.65□□□□□ -0.38
VPS4B-202ENST00000588059 TMEM40Q8WWA1 233 aa12.65□□□□□ -0.38
VPS4B-202ENST00000588059 ADAM2Q99965 735 aa12.65□□□□□ -0.38
VPS4B-202ENST00000588059 MYL10Q9BUA6 226 aa12.65□□□□□ -0.38
VPS4B-202ENST00000588059 AZI2Q9H6S1 392 aa12.65□□□□□ -0.38
VPS4B-202ENST00000588059 CWH43Q9H720 699 aa12.65□□□□□ -0.38
VPS4B-202ENST00000588059 JADE2Q9NQC1 790 aa12.65□□□□□ -0.38
VPS4B-202ENST00000588059 TSHZ2Q9NRE2 1034 aa12.65□□□□□ -0.38
VPS4B-202ENST00000588059 RGS18Q9NS28 235 aa12.65□□□□□ -0.38
VPS4B-202ENST00000588059 C1orf112Q9NSG2 853 aa12.65□□□□□ -0.38
VPS4B-202ENST00000588059 SLC9A2Q9UBY0 812 aa12.65□□□□□ -0.38
VPS4B-202ENST00000588059 SORCS3Q9UPU3 1222 aa12.65□□□□□ -0.38
VPS4B-202ENST00000588059 NOC2LQ9Y3T9 749 aaKnown RBP12.65□□□□□ -0.38
VPS4B-202ENST00000588059 DMDP11532 3685 aa12.65□□□□□ -0.39
VPS4B-202ENST00000588059 DENND3A2RUS2 1198 aa12.64□□□□□ -0.39
VPS4B-202ENST00000588059 HIDE1A8MVS5 230 aa12.64□□□□□ -0.39
VPS4B-202ENST00000588059 MAFGO15525 162 aa12.64□□□□□ -0.39
VPS4B-202ENST00000588059 RPS6KA5O75582 802 aa12.64□□□□□ -0.39
VPS4B-202ENST00000588059 FGFR1P11362 822 aa12.64□□□□□ -0.39
VPS4B-202ENST00000588059 HOXB8P17481 243 aaPredicted RBP12.64□□□□□ -0.39
VPS4B-202ENST00000588059 PDE4AP27815 886 aa12.64□□□□□ -0.39
VPS4B-202ENST00000588059 ANTXR2P58335 489 aa12.64□□□□□ -0.39
VPS4B-202ENST00000588059 ACTR2P61160 394 aa12.64□□□□□ -0.39
VPS4B-202ENST00000588059 PLCB3Q01970 1234 aa12.64□□□□□ -0.39
VPS4B-202ENST00000588059 SART3Q15020 963 aaKnown RBP12.64□□□□□ -0.39
VPS4B-202ENST00000588059 FAM43BQ6ZT52 329 aaPredicted RBP12.64□□□□□ -0.39
VPS4B-202ENST00000588059 SLC24A5Q71RS6 500 aa12.64□□□□□ -0.39
VPS4B-202ENST00000588059 PLPPR4Q7Z2D5 763 aa12.64□□□□□ -0.39
VPS4B-202ENST00000588059 RALYLQ86SE5 291 aaKnown RBP12.64□□□□□ -0.39
VPS4B-202ENST00000588059 NME8Q8N427 588 aa12.64□□□□□ -0.39
VPS4B-202ENST00000588059 MRPS27Q92552 414 aaKnown RBP12.64□□□□□ -0.39
VPS4B-202ENST00000588059 TNPO1Q92973 898 aaKnown RBP12.64□□□□□ -0.39
VPS4B-202ENST00000588059 MAP3K14Q99558 947 aa12.64□□□□□ -0.39
VPS4B-202ENST00000588059 TCF25Q9BQ70 676 aa12.64□□□□□ -0.39
VPS4B-202ENST00000588059 SMOC2Q9H3U7 446 aa12.64□□□□□ -0.39
VPS4B-202ENST00000588059 POMKQ9H5K3 350 aa12.64□□□□□ -0.39
VPS4B-202ENST00000588059 PSTPIP2Q9H939 334 aa12.64□□□□□ -0.39
VPS4B-202ENST00000588059 CDHR5Q9HBB8 845 aa12.64□□□□□ -0.39
VPS4B-202ENST00000588059 ENTPD7Q9NQZ7 604 aa12.64□□□□□ -0.39
VPS4B-202ENST00000588059 RNF216Q9NWF9 866 aaPredicted RBP12.64□□□□□ -0.39
VPS4B-202ENST00000588059 SEC63Q9UGP8 760 aaKnown RBP12.64□□□□□ -0.39
VPS4B-202ENST00000588059 GINS2Q9Y248 185 aa12.64□□□□□ -0.39
VPS4B-202ENST00000588059 NR2E1Q9Y466 385 aa12.64□□□□□ -0.39
VPS4B-202ENST00000588059 DENND4AQ7Z401 1863 aa12.63□□□□□ -0.39
VPS4B-202ENST00000588059 GVINP1Q7Z2Y8 2422 aa12.63□□□□□ -0.39
VPS4B-202ENST00000588059 C2CD4DB7Z1M9 353 aa12.63□□□□□ -0.39
VPS4B-202ENST00000588059 E7EWF7 191 aa12.63□□□□□ -0.39
VPS4B-202ENST00000588059 DDAH1O94760 285 aa12.63□□□□□ -0.39
VPS4B-202ENST00000588059 PLEKHA8P1O95397 391 aa12.63□□□□□ -0.39
VPS4B-202ENST00000588059 SMARCA1P28370 1054 aa12.63□□□□□ -0.39
VPS4B-202ENST00000588059 STAT5BP51692 787 aa12.63□□□□□ -0.39
VPS4B-202ENST00000588059 NUCB1Q02818 461 aa12.63□□□□□ -0.39
VPS4B-202ENST00000588059 ZNF654Q8IZM8 581 aa12.63□□□□□ -0.39
VPS4B-202ENST00000588059 NCOA7Q8NI08 942 aa12.63□□□□□ -0.39
VPS4B-202ENST00000588059 CTCFLQ8NI51 663 aaPredicted RBP12.63□□□□□ -0.39
VPS4B-202ENST00000588059 IGDCC4Q8TDY8 1250 aa12.63□□□□□ -0.39
VPS4B-202ENST00000588059 KCNH7Q9NS40 1196 aa12.63□□□□□ -0.39
VPS4B-202ENST00000588059 TMEM161AQ9NX61 479 aa12.63□□□□□ -0.39
VPS4B-202ENST00000588059 ST3GAL5Q9UNP4 418 aa12.63□□□□□ -0.39
VPS4B-202ENST00000588059 U3KPZ7 1027 aaPredicted RBP12.63□□□□□ -0.39
VPS4B-202ENST00000588059 NFASCO94856 1347 aa12.62□□□□□ -0.39
VPS4B-202ENST00000588059 SPDYE3A6NKU9 549 aa12.62□□□□□ -0.39
VPS4B-202ENST00000588059 KLRC1P26715 233 aa12.62□□□□□ -0.39
VPS4B-202ENST00000588059 KIF5BP33176 963 aa12.62□□□□□ -0.39
VPS4B-202ENST00000588059 FAM189BP81408 668 aa12.62□□□□□ -0.39
VPS4B-202ENST00000588059 PTH1RQ03431 593 aa12.62□□□□□ -0.39
VPS4B-202ENST00000588059 TPRNQ4KMQ1 711 aa12.62□□□□□ -0.39
VPS4B-202ENST00000588059 ERMP1Q7Z2K6 904 aa12.62□□□□□ -0.39
VPS4B-202ENST00000588059 FRMD5Q7Z6J6 570 aa12.62□□□□□ -0.39
VPS4B-202ENST00000588059 FAM228AQ86W67 206 aa12.62□□□□□ -0.39
VPS4B-202ENST00000588059 MB21D2Q8IYB1 491 aaPredicted RBP12.62□□□□□ -0.39
VPS4B-202ENST00000588059 KIAA0319LQ8IZA0 1049 aa12.62□□□□□ -0.39
VPS4B-202ENST00000588059 SRBD1Q8N5C6 995 aaKnown RBP12.62□□□□□ -0.39
VPS4B-202ENST00000588059 CASP10Q92851 521 aa12.62□□□□□ -0.39
VPS4B-202ENST00000588059 NECTIN4Q96NY8 510 aa12.62□□□□□ -0.39
VPS4B-202ENST00000588059 MXRA8Q9BRK3 442 aa12.62□□□□□ -0.39
VPS4B-202ENST00000588059 SDF4Q9BRK5 362 aa12.62□□□□□ -0.39
VPS4B-202ENST00000588059 ELAC1Q9H777 363 aaKnown RBP12.62□□□□□ -0.39
VPS4B-202ENST00000588059 ATP6V0A4Q9HBG4 840 aa12.62□□□□□ -0.39
VPS4B-202ENST00000588059 LY9Q9HBG7 655 aa12.62□□□□□ -0.39
VPS4B-202ENST00000588059 NGRNQ9NPE2 291 aaKnown RBP12.62□□□□□ -0.39
VPS4B-202ENST00000588059 RNF19AQ9NV58 838 aa12.62□□□□□ -0.39
VPS4B-202ENST00000588059 PUF60Q9UHX1 559 aaKnown RBP12.62□□□□□ -0.39
VPS4B-202ENST00000588059 PCDHA6Q9UN73 950 aa12.62□□□□□ -0.39
VPS4B-202ENST00000588059 PCDHA8Q9Y5H6 950 aa12.62□□□□□ -0.39
VPS4B-202ENST00000588059 HCFC2Q9Y5Z7 792 aa12.62□□□□□ -0.39
VPS4B-202ENST00000588059 MYH9P35579 1960 aaKnown RBP12.61□□□□□ -0.39
VPS4B-202ENST00000588059 IGKV6D-21A0A0A0MT36 114 aa12.61□□□□□ -0.39
VPS4B-202ENST00000588059 GPR182O15218 404 aa12.61□□□□□ -0.39
VPS4B-202ENST00000588059 ATG7O95352 703 aa12.61□□□□□ -0.39
VPS4B-202ENST00000588059 ASGR2P07307 311 aa12.61□□□□□ -0.39
VPS4B-202ENST00000588059 PPM1AP35813 382 aa12.61□□□□□ -0.39
VPS4B-202ENST00000588059 PBX3P40426 434 aa12.61□□□□□ -0.39
VPS4B-202ENST00000588059 SLC26A2P50443 739 aa12.61□□□□□ -0.39
VPS4B-202ENST00000588059 ITGB3BPQ13352 177 aaPredicted RBP12.61□□□□□ -0.39
VPS4B-202ENST00000588059 DSC3Q14574 896 aa12.61□□□□□ -0.39
VPS4B-202ENST00000588059 ODR4Q5SWX8 454 aa12.61□□□□□ -0.39
VPS4B-202ENST00000588059 ASTLQ6HA08 431 aaPredicted RBP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms