RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 AIFM3Q96NN9 605 aa23.2■■□□□ 1.3
SHMT1-209ENST00000582653 LMAN2LQ9H0V9 348 aa23.2■■□□□ 1.3
SHMT1-209ENST00000582653 NSUN3Q9H649 340 aaKnown RBP23.2■■□□□ 1.3
SHMT1-209ENST00000582653 SH3GLB2Q9NR46 395 aa23.2■■□□□ 1.3
SHMT1-209ENST00000582653 MAFBQ9Y5Q3 323 aaPredicted RBP23.2■■□□□ 1.3
SHMT1-209ENST00000582653 COL1A2P08123 1366 aa23.19■■□□□ 1.3
SHMT1-209ENST00000582653 DTNBO60941 627 aa23.19■■□□□ 1.3
SHMT1-209ENST00000582653 PAK2Q13177 524 aa23.19■■□□□ 1.3
SHMT1-209ENST00000582653 TCEAL5Q5H9L2 206 aa23.19■■□□□ 1.3
SHMT1-209ENST00000582653 ZNF746Q6NUN9 644 aaPredicted RBP23.19■■□□□ 1.3
SHMT1-209ENST00000582653 CKAP2LQ8IYA6 745 aa23.19■■□□□ 1.3
SHMT1-209ENST00000582653 KIAA0319LQ8IZA0 1049 aa23.19■■□□□ 1.3
SHMT1-209ENST00000582653 C11orf84Q9BUA3 381 aaPredicted RBP23.19■■□□□ 1.3
SHMT1-209ENST00000582653 PLVAPQ9BX97 442 aa23.19■■□□□ 1.3
SHMT1-209ENST00000582653 TTC3P53804 2025 aa23.19■■□□□ 1.3
SHMT1-209ENST00000582653 NCK2O43639 380 aa23.18■■□□□ 1.3
SHMT1-209ENST00000582653 STAG3L1P0CL83 205 aa23.18■■□□□ 1.3
SHMT1-209ENST00000582653 COL19A1Q14993 1142 aa23.18■■□□□ 1.3
SHMT1-209ENST00000582653 PUS10Q3MIT2 529 aaKnown RBP23.18■■□□□ 1.3
SHMT1-209ENST00000582653 NPAS4Q8IUM7 802 aa23.18■■□□□ 1.3
SHMT1-209ENST00000582653 SMAP1Q8IYB5 467 aaPredicted RBP23.18■■□□□ 1.3
SHMT1-209ENST00000582653 BBXQ8WY36 941 aaPredicted RBP23.18■■□□□ 1.3
SHMT1-209ENST00000582653 GJA10Q969M2 543 aa23.18■■□□□ 1.3
SHMT1-209ENST00000582653 PABPC5Q96DU9 382 aaKnown RBP23.18■■□□□ 1.3
SHMT1-209ENST00000582653 PCDHA4Q9UN74 947 aa23.18■■□□□ 1.3
SHMT1-209ENST00000582653 PCDHA10Q9Y5I2 948 aa23.18■■□□□ 1.3
SHMT1-209ENST00000582653 ZBTB42B2RXF5 422 aa23.17■■□□□ 1.3
SHMT1-209ENST00000582653 GRM6O15303 877 aa23.17■■□□□ 1.3
SHMT1-209ENST00000582653 MSH4O15457 936 aa23.17■■□□□ 1.3
SHMT1-209ENST00000582653 DEXIO95424 95 aa23.17■■□□□ 1.3
SHMT1-209ENST00000582653 FAM178BQ8IXR5 827 aa23.17■■□□□ 1.3
SHMT1-209ENST00000582653 TBCKQ8TEA7 893 aa23.17■■□□□ 1.3
SHMT1-209ENST00000582653 TMX1Q9H3N1 280 aa23.17■■□□□ 1.3
SHMT1-209ENST00000582653 EPHX3Q9H6B9 360 aa23.17■■□□□ 1.3
SHMT1-209ENST00000582653 CDHR5Q9HBB8 845 aa23.17■■□□□ 1.3
SHMT1-209ENST00000582653 GABBR1Q9UBS5 961 aa23.17■■□□□ 1.3
SHMT1-209ENST00000582653 SAMM50Q9Y512 469 aa23.17■■□□□ 1.3
SHMT1-209ENST00000582653 RALGAPA2Q2PPJ7 1873 aa23.16■■□□□ 1.3
SHMT1-209ENST00000582653 GRXCR2A6NFK2 248 aa23.16■■□□□ 1.3
SHMT1-209ENST00000582653 PSAPP07602 524 aa23.16■■□□□ 1.3
SHMT1-209ENST00000582653 USP11P51784 963 aa23.16■■□□□ 1.3
SHMT1-209ENST00000582653 NFX1Q12986 1120 aaKnown RBP23.16■■□□□ 1.3
SHMT1-209ENST00000582653 NAALADL2Q58DX5 795 aa23.16■■□□□ 1.3
SHMT1-209ENST00000582653 PTCRAQ6ISU1 281 aaPredicted RBP23.16■■□□□ 1.3
SHMT1-209ENST00000582653 CMTR2Q8IYT2 770 aaKnown RBP23.16■■□□□ 1.3
SHMT1-209ENST00000582653 P2RX5Q93086 422 aa23.16■■□□□ 1.3
SHMT1-209ENST00000582653 CD320Q9NPF0 282 aa23.16■■□□□ 1.3
SHMT1-209ENST00000582653 GINS2Q9Y248 185 aa23.16■■□□□ 1.3
SHMT1-209ENST00000582653 RPS6KA5O75582 802 aa23.15■■□□□ 1.3
SHMT1-209ENST00000582653 SCRN1Q12765 414 aa23.15■■□□□ 1.3
SHMT1-209ENST00000582653 TMEM266Q2M3C6 531 aa23.15■■□□□ 1.3
SHMT1-209ENST00000582653 ODR4Q5SWX8 454 aa23.15■■□□□ 1.3
SHMT1-209ENST00000582653 CPLX2Q6PUV4 134 aaKnown RBP23.15■■□□□ 1.3
SHMT1-209ENST00000582653 BLIDQ8IZY5 108 aa23.15■■□□□ 1.3
SHMT1-209ENST00000582653 TCEAL9Q9UHQ7 104 aa23.15■■□□□ 1.3
SHMT1-209ENST00000582653 PLAGL2Q9UPG8 496 aa23.15■■□□□ 1.3
SHMT1-209ENST00000582653 NOC2LQ9Y3T9 749 aaKnown RBP23.15■■□□□ 1.3
SHMT1-209ENST00000582653 NLRC5Q86WI3 1866 aa23.15■■□□□ 1.3
SHMT1-209ENST00000582653 M0R2N6 131 aa23.14■■□□□ 1.29
SHMT1-209ENST00000582653 NPY5RQ15761 445 aa23.14■■□□□ 1.29
SHMT1-209ENST00000582653 PPP1R16BQ96T49 567 aa23.14■■□□□ 1.29
SHMT1-209ENST00000582653 ERVK-5Q9HDB9 667 aa23.14■■□□□ 1.29
SHMT1-209ENST00000582653 TPCN1Q9ULQ1 816 aa23.14■■□□□ 1.29
SHMT1-209ENST00000582653 KCNJ14Q9UNX9 436 aa23.14■■□□□ 1.29
SHMT1-209ENST00000582653 MRPL42Q9Y6G3 142 aaKnown RBP23.14■■□□□ 1.29
SHMT1-209ENST00000582653 H3BQ06 376 aaPredicted RBP23.13■■□□□ 1.29
SHMT1-209ENST00000582653 GPR182O15218 404 aa23.13■■□□□ 1.29
SHMT1-209ENST00000582653 CHMP2AO43633 222 aa23.13■■□□□ 1.29
SHMT1-209ENST00000582653 TDP2O95551 362 aa23.13■■□□□ 1.29
SHMT1-209ENST00000582653 C22orf31O95567 290 aa23.13■■□□□ 1.29
SHMT1-209ENST00000582653 IL9P15248 144 aa23.13■■□□□ 1.29
SHMT1-209ENST00000582653 SARSP49591 514 aaKnown RBP23.13■■□□□ 1.29
SHMT1-209ENST00000582653 CRYBB1P53674 252 aaPredicted RBP23.13■■□□□ 1.29
SHMT1-209ENST00000582653 CAMK1Q14012 370 aa23.13■■□□□ 1.29
SHMT1-209ENST00000582653 CTC1Q2NKJ3 1217 aa23.13■■□□□ 1.29
SHMT1-209ENST00000582653 GJD3Q8N144 294 aa23.13■■□□□ 1.29
SHMT1-209ENST00000582653 TMEM40Q8WWA1 233 aa23.13■■□□□ 1.29
SHMT1-209ENST00000582653 SLC5A5Q92911 643 aa23.13■■□□□ 1.29
SHMT1-209ENST00000582653 ALG13Q9NP73 1137 aaKnown RBP23.13■■□□□ 1.29
SHMT1-209ENST00000582653 DISC1Q9NRI5 854 aa23.13■■□□□ 1.29
SHMT1-209ENST00000582653 RGS18Q9NS28 235 aa23.13■■□□□ 1.29
SHMT1-209ENST00000582653 RNF216Q9NWF9 866 aaPredicted RBP23.13■■□□□ 1.29
SHMT1-209ENST00000582653 LRFN2Q9ULH4 789 aa23.13■■□□□ 1.29
SHMT1-209ENST00000582653 ST3GAL5Q9UNP4 418 aa23.13■■□□□ 1.29
SHMT1-209ENST00000582653 CEP131Q9UPN4 1083 aa23.13■■□□□ 1.29
SHMT1-209ENST00000582653 PCDHB7Q9Y5E2 793 aa23.13■■□□□ 1.29
SHMT1-209ENST00000582653 WDR64B1ANS9 1081 aa23.12■■□□□ 1.29
SHMT1-209ENST00000582653 PI4K2BG5E9Z4 385 aa23.12■■□□□ 1.29
SHMT1-209ENST00000582653 MAGEB2O15479 319 aa23.12■■□□□ 1.29
SHMT1-209ENST00000582653 GAS7O60861 476 aa23.12■■□□□ 1.29
SHMT1-209ENST00000582653 LTBRP36941 435 aa23.12■■□□□ 1.29
SHMT1-209ENST00000582653 ERICH6BQ5W0A0 696 aa23.12■■□□□ 1.29
SHMT1-209ENST00000582653 METTL13Q8N6R0 699 aa23.12■■□□□ 1.29
SHMT1-209ENST00000582653 KHSRPQ92945 711 aaKnown RBP eCLIP23.12■■□□□ 1.29
SHMT1-209ENST00000582653 RIT2Q99578 217 aa23.12■■□□□ 1.29
SHMT1-209ENST00000582653 SLKQ9H2G2 1235 aaPredicted RBP23.12■■□□□ 1.29
SHMT1-209ENST00000582653 UNC45AQ9H3U1 944 aa23.12■■□□□ 1.29
SHMT1-209ENST00000582653 BRWD1Q9NSI6 2320 aa23.12■■□□□ 1.29
SHMT1-209ENST00000582653 GJB4Q9NTQ9 266 aa23.12■■□□□ 1.29
SHMT1-209ENST00000582653 CLDND1Q9NY35 253 aa23.12■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms