RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 PPP1R13LQ8WUF5 828 aa27.91■■■□□ 2.06
SHMT1-207ENST00000580002 CEP170P1Q96L14 293 aa27.91■■■□□ 2.06
SHMT1-207ENST00000580002 ZHX3Q9H4I2 956 aa27.91■■■□□ 2.06
SHMT1-207ENST00000580002 AZI2Q9H6S1 392 aa27.91■■■□□ 2.06
SHMT1-207ENST00000580002 ANKEF1Q9NU02 776 aa27.91■■■□□ 2.06
SHMT1-207ENST00000580002 TRIM17Q9Y577 477 aa27.91■■■□□ 2.06
SHMT1-207ENST00000580002 LGALS2P05162 132 aa27.91■■■□□ 2.06
SHMT1-207ENST00000580002 MMP3P08254 477 aa27.91■■■□□ 2.06
SHMT1-207ENST00000580002 PRKAR2AP13861 404 aaKnown RBP27.91■■■□□ 2.06
SHMT1-207ENST00000580002 COASYQ13057 564 aa27.91■■■□□ 2.06
SHMT1-207ENST00000580002 KCNB1Q14721 858 aa27.91■■■□□ 2.06
SHMT1-207ENST00000580002 MTERF2Q49AM1 385 aa27.91■■■□□ 2.06
SHMT1-207ENST00000580002 FAM160B1Q5W0V3 765 aa27.91■■■□□ 2.06
SHMT1-207ENST00000580002 LRRC27Q9C0I9 530 aa27.91■■■□□ 2.06
SHMT1-207ENST00000580002 RNPEPQ9H4A4 650 aa27.91■■■□□ 2.06
SHMT1-207ENST00000580002 CBX8Q9HC52 389 aa27.91■■■□□ 2.06
SHMT1-207ENST00000580002 SLC39A2Q9NP94 309 aa27.91■■■□□ 2.06
SHMT1-207ENST00000580002 NKRFO15226 690 aaKnown RBP eCLIP27.9■■■□□ 2.06
SHMT1-207ENST00000580002 EHHADHQ08426 723 aa27.9■■■□□ 2.06
SHMT1-207ENST00000580002 PLCB4Q15147 1175 aa27.9■■■□□ 2.06
SHMT1-207ENST00000580002 DAW1Q8N136 415 aa27.9■■■□□ 2.06
SHMT1-207ENST00000580002 C16orf70Q9BSU1 422 aa27.9■■■□□ 2.06
SHMT1-207ENST00000580002 GPRC5CQ9NQ84 441 aa27.9■■■□□ 2.06
SHMT1-207ENST00000580002 EXOC1Q9NV70 894 aa27.9■■■□□ 2.06
SHMT1-207ENST00000580002 MYH9P35579 1960 aaKnown RBP27.89■■■□□ 2.06
SHMT1-207ENST00000580002 PVALEFA0A1B0GWK0 134 aa27.89■■■□□ 2.06
SHMT1-207ENST00000580002 MYADML2A6NDP7 307 aa27.89■■■□□ 2.06
SHMT1-207ENST00000580002 PPP1R3GB7ZBB8 358 aa27.89■■■□□ 2.06
SHMT1-207ENST00000580002 TRIML1Q8N9V2 468 aa27.89■■■□□ 2.06
SHMT1-207ENST00000580002 MED15Q96RN5 788 aa27.89■■■□□ 2.06
SHMT1-207ENST00000580002 CEP89Q96ST8 783 aa27.89■■■□□ 2.06
SHMT1-207ENST00000580002 CYP26B1Q9NR63 512 aa27.89■■■□□ 2.06
SHMT1-207ENST00000580002 PTCH2Q9Y6C5 1203 aa27.89■■■□□ 2.06
SHMT1-207ENST00000580002 AKR1A1P14550 325 aa27.88■■■□□ 2.05
SHMT1-207ENST00000580002 ZNF165P49910 485 aa27.88■■■□□ 2.05
SHMT1-207ENST00000580002 MAPK7Q13164 816 aa27.88■■■□□ 2.05
SHMT1-207ENST00000580002 LRRC41Q15345 812 aa27.88■■■□□ 2.05
SHMT1-207ENST00000580002 ZNF658Q5TYW1 1059 aaPredicted RBP27.88■■■□□ 2.05
SHMT1-207ENST00000580002 PLPPR4Q7Z2D5 763 aa27.88■■■□□ 2.05
SHMT1-207ENST00000580002 LUZP1Q86V48 1076 aa27.88■■■□□ 2.05
SHMT1-207ENST00000580002 KIAA0895Q8NCT3 520 aa27.88■■■□□ 2.05
SHMT1-207ENST00000580002 ZBTB10Q96DT7 871 aa27.88■■■□□ 2.05
SHMT1-207ENST00000580002 EMSYQ7Z589 1322 aa27.88■■■□□ 2.05
SHMT1-207ENST00000580002 HIP1RO75146 1068 aa27.88■■■□□ 2.05
SHMT1-207ENST00000580002 OTUD6AQ7L8S5 288 aa27.88■■■□□ 2.05
SHMT1-207ENST00000580002 PCDHA2Q9Y5H9 948 aa27.88■■■□□ 2.05
SHMT1-207ENST00000580002 FRMD3A2A2Y4 597 aa27.87■■■□□ 2.05
SHMT1-207ENST00000580002 A6NJR5 290 aa27.87■■■□□ 2.05
SHMT1-207ENST00000580002 DKC1O60832 514 aaKnown RBP eCLIP27.87■■■□□ 2.05
SHMT1-207ENST00000580002 PPFIA4O75335 1185 aa27.87■■■□□ 2.05
SHMT1-207ENST00000580002 PRCPP42785 496 aa27.87■■■□□ 2.05
SHMT1-207ENST00000580002 HERC4Q5GLZ8 1057 aaPredicted RBP27.87■■■□□ 2.05
SHMT1-207ENST00000580002 SFR1Q86XK3 245 aa27.87■■■□□ 2.05
SHMT1-207ENST00000580002 TRAPPC12Q8WVT3 735 aa27.87■■■□□ 2.05
SHMT1-207ENST00000580002 SMARCAD1Q9H4L7 1026 aa27.87■■■□□ 2.05
SHMT1-207ENST00000580002 RMND1Q9NWS8 449 aa27.87■■■□□ 2.05
SHMT1-207ENST00000580002 CASP8AP2Q9UKL3 1982 aa27.87■■■□□ 2.05
SHMT1-207ENST00000580002 GOLGA6L3A6NEY3 463 aa27.86■■■□□ 2.05
SHMT1-207ENST00000580002 GNRH1P01148 92 aa27.86■■■□□ 2.05
SHMT1-207ENST00000580002 HOXD8P13378 290 aaPredicted RBP27.86■■■□□ 2.05
SHMT1-207ENST00000580002 IQCB1Q15051 598 aa27.86■■■□□ 2.05
SHMT1-207ENST00000580002 KLHL10Q6JEL2 608 aa27.86■■■□□ 2.05
SHMT1-207ENST00000580002 CCDC43Q96MW1 224 aaKnown RBP27.86■■■□□ 2.05
SHMT1-207ENST00000580002 NIFKQ9BYG3 293 aaKnown RBP27.86■■■□□ 2.05
SHMT1-207ENST00000580002 XPNPEP1Q9NQW7 623 aa27.86■■■□□ 2.05
SHMT1-207ENST00000580002 BRCA2P51587 3418 aa27.86■■■□□ 2.05
SHMT1-207ENST00000580002 ZBTB42B2RXF5 422 aa27.86■■■□□ 2.05
SHMT1-207ENST00000580002 PGK1P00558 417 aa27.86■■■□□ 2.05
SHMT1-207ENST00000580002 HMGCRP04035 888 aa27.86■■■□□ 2.05
SHMT1-207ENST00000580002 GUCY2CP25092 1073 aa27.86■■■□□ 2.05
SHMT1-207ENST00000580002 TARBP2Q15633 366 aaKnown RBP27.86■■■□□ 2.05
SHMT1-207ENST00000580002 TRMT44Q8IYL2 757 aaKnown RBP27.86■■■□□ 2.05
SHMT1-207ENST00000580002 PDLIM7Q9NR12 457 aa27.86■■■□□ 2.05
SHMT1-207ENST00000580002 NRBP1Q9UHY1 535 aa27.86■■■□□ 2.05
SHMT1-207ENST00000580002 STX17P56962 302 aa27.85■■■□□ 2.05
SHMT1-207ENST00000580002 MAP3K21Q5TCX8 1036 aa27.85■■■□□ 2.05
SHMT1-207ENST00000580002 DHX40Q8IX18 779 aaKnown RBP27.85■■■□□ 2.05
SHMT1-207ENST00000580002 CCDC65Q8IXS2 484 aa27.85■■■□□ 2.05
SHMT1-207ENST00000580002 NRBP2Q9NSY0 501 aa27.85■■■□□ 2.05
SHMT1-207ENST00000580002 SEPT4O43236 478 aa27.84■■■□□ 2.05
SHMT1-207ENST00000580002 CASP5P51878 434 aa27.84■■■□□ 2.05
SHMT1-207ENST00000580002 DGKDQ16760 1214 aa27.84■■■□□ 2.05
SHMT1-207ENST00000580002 MLKLQ8NB16 471 aa27.84■■■□□ 2.05
SHMT1-207ENST00000580002 FAM200AQ8TCP9 573 aa27.84■■■□□ 2.05
SHMT1-207ENST00000580002 PXYLP1Q8TE99 480 aa27.84■■■□□ 2.05
SHMT1-207ENST00000580002 ATP8B4Q8TF62 1192 aa27.84■■■□□ 2.05
SHMT1-207ENST00000580002 AP5M1Q9H0R1 490 aa27.84■■■□□ 2.05
SHMT1-207ENST00000580002 DUSP11O75319 330 aaKnown RBP27.83■■■□□ 2.05
SHMT1-207ENST00000580002 CHMP4BP1P59074 171 aa27.83■■■□□ 2.05
SHMT1-207ENST00000580002 AOPEPQ8N6M6 819 aa27.83■■■□□ 2.05
SHMT1-207ENST00000580002 SH3TC2Q8TF17 1288 aa27.83■■■□□ 2.05
SHMT1-207ENST00000580002 KAT2BQ92831 832 aa27.83■■■□□ 2.05
SHMT1-207ENST00000580002 TRPC6Q9Y210 931 aa27.83■■■□□ 2.05
SHMT1-207ENST00000580002 FAM13AO94988 1023 aa27.83■■■□□ 2.05
SHMT1-207ENST00000580002 INHAP05111 366 aa27.83■■■□□ 2.05
SHMT1-207ENST00000580002 FAM26FQ5R3K3 315 aa27.83■■■□□ 2.05
SHMT1-207ENST00000580002 FAM102BQ5T8I3 360 aa27.83■■■□□ 2.05
SHMT1-207ENST00000580002 MYCT1Q8N699 235 aa27.83■■■□□ 2.05
SHMT1-207ENST00000580002 BBXQ8WY36 941 aaPredicted RBP27.83■■■□□ 2.05
SHMT1-207ENST00000580002 FIZ1Q96SL8 496 aa27.83■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms