RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 F2P00734 622 aa17.96■□□□□ 0.47
SS18-211ENST00000578954 SSBP05455 408 aaKnown RBP eCLIP17.96■□□□□ 0.47
SS18-211ENST00000578954 CST5P28325 142 aaPredicted RBP17.96■□□□□ 0.47
SS18-211ENST00000578954 CNGA1P29973 690 aa17.96■□□□□ 0.47
SS18-211ENST00000578954 DHX8Q14562 1220 aaKnown RBP17.96■□□□□ 0.47
SS18-211ENST00000578954 PLCB4Q15147 1175 aa17.96■□□□□ 0.47
SS18-211ENST00000578954 FSCN1Q16658 493 aaKnown RBP17.96■□□□□ 0.47
SS18-211ENST00000578954 PADI6Q6TGC4 694 aa17.96■□□□□ 0.47
SS18-211ENST00000578954 UNC13DQ70J99 1090 aa17.96■□□□□ 0.47
SS18-211ENST00000578954 CTU1Q7Z7A3 348 aaKnown RBP17.96■□□□□ 0.47
SS18-211ENST00000578954 CYP26B1Q9NR63 512 aa17.96■□□□□ 0.47
SS18-211ENST00000578954 NRBP2Q9NSY0 501 aa17.96■□□□□ 0.47
SS18-211ENST00000578954 BMP2KQ9NSY1 1161 aaPredicted RBP17.96■□□□□ 0.47
SS18-211ENST00000578954 SEPT9Q9UHD8 586 aaPredicted RBP17.96■□□□□ 0.47
SS18-211ENST00000578954 ZNF215Q9UL58 517 aaPredicted RBP17.96■□□□□ 0.47
SS18-211ENST00000578954 HTTP42858 3142 aa17.95■□□□□ 0.46
SS18-211ENST00000578954 TMEM150BA6NC51 233 aa17.95■□□□□ 0.46
SS18-211ENST00000578954 HBP1O60381 514 aa17.95■□□□□ 0.46
SS18-211ENST00000578954 KPNA6O60684 536 aa17.95■□□□□ 0.46
SS18-211ENST00000578954 NPEPPSP55786 919 aa17.95■□□□□ 0.46
SS18-211ENST00000578954 EHHADHQ08426 723 aa17.95■□□□□ 0.46
SS18-211ENST00000578954 GIT2Q14161 759 aa17.95■□□□□ 0.46
SS18-211ENST00000578954 XKR9Q5GH70 373 aa17.95■□□□□ 0.46
SS18-211ENST00000578954 PLA2G4FQ68DD2 849 aa17.95■□□□□ 0.46
SS18-211ENST00000578954 KLHDC9Q8NEP7 349 aa17.95■□□□□ 0.46
SS18-211ENST00000578954 TIPINQ9BVW5 301 aa17.95■□□□□ 0.46
SS18-211ENST00000578954 HMX1Q9NP08 348 aaPredicted RBP17.95■□□□□ 0.46
SS18-211ENST00000578954 PDLIM7Q9NR12 457 aa17.95■□□□□ 0.46
SS18-211ENST00000578954 MAN1B1Q9UKM7 699 aa17.95■□□□□ 0.46
SS18-211ENST00000578954 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.94■□□□□ 0.46
SS18-211ENST00000578954 MYADML2A6NDP7 307 aa17.94■□□□□ 0.46
SS18-211ENST00000578954 HAS3O00219 553 aa17.94■□□□□ 0.46
SS18-211ENST00000578954 RHOBTB3O94955 611 aa17.94■□□□□ 0.46
SS18-211ENST00000578954 RPN1P04843 607 aaKnown RBP17.94■□□□□ 0.46
SS18-211ENST00000578954 ZNF286BP0CG31 522 aa17.94■□□□□ 0.46
SS18-211ENST00000578954 ASIC1P78348 528 aa17.94■□□□□ 0.46
SS18-211ENST00000578954 MORC3Q14149 939 aa17.94■□□□□ 0.46
SS18-211ENST00000578954 LRSAM1Q6UWE0 723 aa17.94■□□□□ 0.46
SS18-211ENST00000578954 KAT2BQ92831 832 aa17.94■□□□□ 0.46
SS18-211ENST00000578954 CEP170P1Q96L14 293 aa17.94■□□□□ 0.46
SS18-211ENST00000578954 SPC25Q9HBM1 224 aa17.94■□□□□ 0.46
SS18-211ENST00000578954 XPNPEP3Q9NQH7 507 aa17.94■□□□□ 0.46
SS18-211ENST00000578954 RMND1Q9NWS8 449 aa17.94■□□□□ 0.46
SS18-211ENST00000578954 ODF2LQ9ULJ1 636 aa17.94■□□□□ 0.46
SS18-211ENST00000578954 COL1A2P08123 1366 aa17.93■□□□□ 0.46
SS18-211ENST00000578954 ZBTB42B2RXF5 422 aa17.93■□□□□ 0.46
SS18-211ENST00000578954 H3BRB1 525 aa17.93■□□□□ 0.46
SS18-211ENST00000578954 DGAT1O75907 488 aa17.93■□□□□ 0.46
SS18-211ENST00000578954 C6orf222P0C671 652 aaPredicted RBP17.93■□□□□ 0.46
SS18-211ENST00000578954 CCDC192P0DO97 292 aa17.93■□□□□ 0.46
SS18-211ENST00000578954 ZNF131P52739 623 aa17.93■□□□□ 0.46
SS18-211ENST00000578954 LBX1P52954 281 aa17.93■□□□□ 0.46
SS18-211ENST00000578954 IRX5P78411 483 aaPredicted RBP17.93■□□□□ 0.46
SS18-211ENST00000578954 BEX3Q00994 111 aa17.93■□□□□ 0.46
SS18-211ENST00000578954 TYRO3Q06418 890 aa17.93■□□□□ 0.46
SS18-211ENST00000578954 MAPK7Q13164 816 aa17.93■□□□□ 0.46
SS18-211ENST00000578954 PKN2Q16513 984 aaKnown RBP17.93■□□□□ 0.46
SS18-211ENST00000578954 KMT5BQ4FZB7 885 aa17.93■□□□□ 0.46
SS18-211ENST00000578954 CCSAPQ6IQ19 270 aaPredicted RBP17.93■□□□□ 0.46
SS18-211ENST00000578954 FBXO46Q6PJ61 603 aaPredicted RBP17.93■□□□□ 0.46
SS18-211ENST00000578954 SASS6Q6UVJ0 657 aa17.93■□□□□ 0.46
SS18-211ENST00000578954 DYMQ7RTS9 669 aa17.93■□□□□ 0.46
SS18-211ENST00000578954 SH3TC2Q8TF17 1288 aa17.93■□□□□ 0.46
SS18-211ENST00000578954 CCDC43Q96MW1 224 aaKnown RBP17.93■□□□□ 0.46
SS18-211ENST00000578954 REEP2Q9BRK0 252 aa17.93■□□□□ 0.46
SS18-211ENST00000578954 GTPBP4Q9BZE4 634 aaKnown RBP17.93■□□□□ 0.46
SS18-211ENST00000578954 TUT1Q9H6E5 874 aaKnown RBP17.93■□□□□ 0.46
SS18-211ENST00000578954 DHX33Q9H6R0 707 aaKnown RBP17.93■□□□□ 0.46
SS18-211ENST00000578954 FRMPD3Q5JV73 1810 aa17.93■□□□□ 0.46
SS18-211ENST00000578954 SCN10AQ9Y5Y9 1956 aa17.92■□□□□ 0.46
SS18-211ENST00000578954 NPHP3-ACAD11A0A0J9YXS1 232 aa17.92■□□□□ 0.46
SS18-211ENST00000578954 USO1O60763 962 aaKnown RBP17.92■□□□□ 0.46
SS18-211ENST00000578954 PGK1P00558 417 aa17.92■□□□□ 0.46
SS18-211ENST00000578954 BMP6P22004 513 aa17.92■□□□□ 0.46
SS18-211ENST00000578954 MARK3P27448 753 aa17.92■□□□□ 0.46
SS18-211ENST00000578954 RFC5P40937 340 aa17.92■□□□□ 0.46
SS18-211ENST00000578954 NLRP12P59046 1061 aa17.92■□□□□ 0.46
SS18-211ENST00000578954 PURAQ00577 322 aaKnown RBP17.92■□□□□ 0.46
SS18-211ENST00000578954 STX1AQ16623 288 aa17.92■□□□□ 0.46
SS18-211ENST00000578954 MTERF2Q49AM1 385 aa17.92■□□□□ 0.46
SS18-211ENST00000578954 ZNF484Q5JVG2 852 aa17.92■□□□□ 0.46
SS18-211ENST00000578954 LHX8Q68G74 356 aa17.92■□□□□ 0.46
SS18-211ENST00000578954 CCDC65Q8IXS2 484 aa17.92■□□□□ 0.46
SS18-211ENST00000578954 DAW1Q8N136 415 aa17.92■□□□□ 0.46
SS18-211ENST00000578954 CCDC47Q96A33 483 aaKnown RBP17.92■□□□□ 0.46
SS18-211ENST00000578954 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.92■□□□□ 0.46
SS18-211ENST00000578954 RNPEPQ9H4A4 650 aa17.92■□□□□ 0.46
SS18-211ENST00000578954 PAK6Q9NQU5 681 aaPredicted RBP17.92■□□□□ 0.46
SS18-211ENST00000578954 XPNPEP1Q9NQW7 623 aa17.92■□□□□ 0.46
SS18-211ENST00000578954 ANO10Q9NW15 660 aa17.92■□□□□ 0.46
SS18-211ENST00000578954 IGKV6-21A0A0C4DH24 114 aa17.91■□□□□ 0.46
SS18-211ENST00000578954 ZEB2O60315 1214 aa17.91■□□□□ 0.46
SS18-211ENST00000578954 KRT18P05783 430 aaKnown RBP17.91■□□□□ 0.46
SS18-211ENST00000578954 GAP43P17677 238 aa17.91■□□□□ 0.46
SS18-211ENST00000578954 COASYQ13057 564 aa17.91■□□□□ 0.46
SS18-211ENST00000578954 SLC9C1Q4G0N8 1177 aa17.91■□□□□ 0.46
SS18-211ENST00000578954 MCPH1Q8NEM0 835 aa17.91■□□□□ 0.46
SS18-211ENST00000578954 SH2D3AQ9BRG2 576 aa17.91■□□□□ 0.46
SS18-211ENST00000578954 KATNAL1Q9BW62 490 aa17.91■□□□□ 0.46
SS18-211ENST00000578954 ATP6V0A4Q9HBG4 840 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms