RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 ZSCAN5CA6NGD5 496 aaPredicted RBP24.93■■□□□ 1.58
VPS53-211ENST00000571805 HEXIM1O94992 359 aaKnown RBP24.93■■□□□ 1.58
VPS53-211ENST00000571805 HSPA1LP34931 641 aa24.93■■□□□ 1.58
VPS53-211ENST00000571805 CTTNQ14247 550 aaKnown RBP24.93■■□□□ 1.58
VPS53-211ENST00000571805 SLC15A2Q16348 729 aa24.93■■□□□ 1.58
VPS53-211ENST00000571805 SLC30A10Q6XR72 485 aa24.93■■□□□ 1.58
VPS53-211ENST00000571805 LRRC57Q8N9N7 239 aa24.93■■□□□ 1.58
VPS53-211ENST00000571805 USP38Q8NB14 1042 aa24.93■■□□□ 1.58
VPS53-211ENST00000571805 PIGOQ8TEQ8 1089 aa24.93■■□□□ 1.58
VPS53-211ENST00000571805 EPB41L5Q9HCM4 733 aa24.93■■□□□ 1.58
VPS53-211ENST00000571805 TMEM59LQ9UK28 342 aa24.93■■□□□ 1.58
VPS53-211ENST00000571805 ZMYM2Q9UBW7 1377 aa24.92■■□□□ 1.58
VPS53-211ENST00000571805 GOLGA8KD6RF30 607 aa24.92■■□□□ 1.58
VPS53-211ENST00000571805 TCERG1LQ5VWI1 586 aa24.92■■□□□ 1.58
VPS53-211ENST00000571805 ALKBH5Q6P6C2 394 aaKnown RBP24.92■■□□□ 1.58
VPS53-211ENST00000571805 C1orf186Q6ZWK4 172 aa24.92■■□□□ 1.58
VPS53-211ENST00000571805 KRT12Q99456 494 aa24.92■■□□□ 1.58
VPS53-211ENST00000571805 TUFT1Q9NNX1 390 aa24.92■■□□□ 1.58
VPS53-211ENST00000571805 GTPBP10A4D1E9 387 aaKnown RBP24.91■■□□□ 1.58
VPS53-211ENST00000571805 GUCY2DQ02846 1103 aa24.91■■□□□ 1.58
VPS53-211ENST00000571805 SRLQ86TD4 932 aa24.91■■□□□ 1.58
VPS53-211ENST00000571805 DNAAF5Q86Y56 855 aa24.91■■□□□ 1.58
VPS53-211ENST00000571805 PRMT6Q96LA8 375 aaPredicted RBP24.91■■□□□ 1.58
VPS53-211ENST00000571805 IKZF4Q9H2S9 585 aa24.91■■□□□ 1.58
VPS53-211ENST00000571805 NFU1Q9UMS0 254 aa24.91■■□□□ 1.58
VPS53-211ENST00000571805 SYNPO2Q9UMS6 1093 aa24.91■■□□□ 1.58
VPS53-211ENST00000571805 OPA1O60313 960 aa24.91■■□□□ 1.58
VPS53-211ENST00000571805 PSMD10O75832 226 aa24.91■■□□□ 1.58
VPS53-211ENST00000571805 ANXA13P27216 316 aa24.91■■□□□ 1.58
VPS53-211ENST00000571805 RPS6KA1Q15418 735 aa24.91■■□□□ 1.58
VPS53-211ENST00000571805 KIAA1755Q5JYT7 1200 aa24.91■■□□□ 1.58
VPS53-211ENST00000571805 GCNT4Q9P109 453 aa24.91■■□□□ 1.58
VPS53-211ENST00000571805 PCDHB13Q9Y5F0 798 aa24.91■■□□□ 1.58
VPS53-211ENST00000571805 ESYT3A0FGR9 886 aa24.9■■□□□ 1.58
VPS53-211ENST00000571805 EIF3DO15371 548 aaKnown RBP eCLIP24.9■■□□□ 1.58
VPS53-211ENST00000571805 KIF4AO95239 1232 aa24.9■■□□□ 1.58
VPS53-211ENST00000571805 FAM153BP0C7A2 387 aa24.9■■□□□ 1.58
VPS53-211ENST00000571805 RNASE9P60153 205 aaKnown RBP24.9■■□□□ 1.58
VPS53-211ENST00000571805 FAM153CQ494X1 144 aa24.9■■□□□ 1.58
VPS53-211ENST00000571805 DYDC2Q96IM9 177 aa24.9■■□□□ 1.58
VPS53-211ENST00000571805 FAM153AQ9UHL3 310 aa24.9■■□□□ 1.58
VPS53-211ENST00000571805 ATP8B3O60423 1300 aa24.9■■□□□ 1.58
VPS53-211ENST00000571805 ZBTB39O15060 712 aa24.9■■□□□ 1.58
VPS53-211ENST00000571805 ZBTB48P10074 688 aaPredicted RBP24.9■■□□□ 1.58
VPS53-211ENST00000571805 NMT1P30419 496 aaKnown RBP24.9■■□□□ 1.58
VPS53-211ENST00000571805 ECE1P42892 770 aa24.9■■□□□ 1.58
VPS53-211ENST00000571805 NFIL3Q16649 462 aa24.9■■□□□ 1.58
VPS53-211ENST00000571805 GJB7Q6PEY0 223 aa24.9■■□□□ 1.58
VPS53-211ENST00000571805 CSRNP1Q96S65 589 aa24.9■■□□□ 1.58
VPS53-211ENST00000571805 RRP15Q9Y3B9 282 aaKnown RBP24.9■■□□□ 1.58
VPS53-211ENST00000571805 COL2A1P02458 1487 aaPredicted RBP24.9■■□□□ 1.58
VPS53-211ENST00000571805 HSF2BPO75031 334 aa24.89■■□□□ 1.58
VPS53-211ENST00000571805 STAT2P52630 851 aa24.89■■□□□ 1.58
VPS53-211ENST00000571805 PPFIA1Q13136 1202 aa24.89■■□□□ 1.58
VPS53-211ENST00000571805 PPP2R5CQ13362 524 aa24.89■■□□□ 1.58
VPS53-211ENST00000571805 TPH2Q8IWU9 490 aa24.89■■□□□ 1.58
VPS53-211ENST00000571805 CASKIN2Q8WXE0 1202 aa24.89■■□□□ 1.58
VPS53-211ENST00000571805 TAF4BQ92750 862 aa24.89■■□□□ 1.58
VPS53-211ENST00000571805 SLC5A5Q92911 643 aa24.89■■□□□ 1.58
VPS53-211ENST00000571805 KCNK3O14649 394 aa24.89■■□□□ 1.57
VPS53-211ENST00000571805 FLOT1O75955 427 aa24.89■■□□□ 1.57
VPS53-211ENST00000571805 PAK2Q13177 524 aa24.89■■□□□ 1.57
VPS53-211ENST00000571805 IFI16Q16666 785 aaKnown RBP24.89■■□□□ 1.57
VPS53-211ENST00000571805 IQCKQ8N0W5 287 aa24.89■■□□□ 1.57
VPS53-211ENST00000571805 MYCT1Q8N699 235 aa24.89■■□□□ 1.57
VPS53-211ENST00000571805 IFT81Q8WYA0 676 aa24.89■■□□□ 1.57
VPS53-211ENST00000571805 ARL8AQ96BM9 186 aa24.89■■□□□ 1.57
VPS53-211ENST00000571805 ZIM3Q96PE6 472 aa24.89■■□□□ 1.57
VPS53-211ENST00000571805 FIZ1Q96SL8 496 aa24.89■■□□□ 1.57
VPS53-211ENST00000571805 GOLPH3Q9H4A6 298 aa24.89■■□□□ 1.57
VPS53-211ENST00000571805 PLEKHA4Q9H4M7 779 aa24.89■■□□□ 1.57
VPS53-211ENST00000571805 ZNF219Q9P2Y4 722 aaPredicted RBP24.89■■□□□ 1.57
VPS53-211ENST00000571805 RBBP6Q7Z6E9 1792 aaKnown RBP24.89■■□□□ 1.57
VPS53-211ENST00000571805 MYO1CO00159 1063 aa24.88■■□□□ 1.57
VPS53-211ENST00000571805 PPFIA4O75335 1185 aa24.88■■□□□ 1.57
VPS53-211ENST00000571805 FAM13AO94988 1023 aa24.88■■□□□ 1.57
VPS53-211ENST00000571805 AOC3Q16853 763 aa24.88■■□□□ 1.57
VPS53-211ENST00000571805 ZC2HC1CQ53FD0 456 aaPredicted RBP24.88■■□□□ 1.57
VPS53-211ENST00000571805 TTMPQ5BVD1 217 aa24.88■■□□□ 1.57
VPS53-211ENST00000571805 LRCH2Q5VUJ6 765 aa24.88■■□□□ 1.57
VPS53-211ENST00000571805 STYK1Q6J9G0 422 aa24.88■■□□□ 1.57
VPS53-211ENST00000571805 TEX2Q8IWB9 1127 aa24.88■■□□□ 1.57
VPS53-211ENST00000571805 CLSTN1O94985 981 aa24.88■■□□□ 1.57
VPS53-211ENST00000571805 CFBP00751 764 aa24.88■■□□□ 1.57
VPS53-211ENST00000571805 NOP2P46087 812 aaKnown RBP24.88■■□□□ 1.57
VPS53-211ENST00000571805 MSL1Q68DK7 614 aa24.88■■□□□ 1.57
VPS53-211ENST00000571805 CC2D2BQ6DHV5 1058 aa24.88■■□□□ 1.57
VPS53-211ENST00000571805 MREGQ8N565 214 aa24.88■■□□□ 1.57
VPS53-211ENST00000571805 TPCN2Q8NHX9 752 aa24.88■■□□□ 1.57
VPS53-211ENST00000571805 SCFD2Q8WU76 684 aa24.88■■□□□ 1.57
VPS53-211ENST00000571805 PBKQ96KB5 322 aa24.88■■□□□ 1.57
VPS53-211ENST00000571805 FEZ2Q9UHY8 353 aaPredicted RBP24.88■■□□□ 1.57
VPS53-211ENST00000571805 DDX3XO00571 662 aaKnown RBP eCLIP24.87■■□□□ 1.57
VPS53-211ENST00000571805 RAD51CO43502 376 aa24.87■■□□□ 1.57
VPS53-211ENST00000571805 PSMC2P35998 433 aaKnown RBP24.87■■□□□ 1.57
VPS53-211ENST00000571805 TRADDQ15628 312 aa24.87■■□□□ 1.57
VPS53-211ENST00000571805 FAM186BQ8IYM0 893 aa24.87■■□□□ 1.57
VPS53-211ENST00000571805 OLIG1Q8TAK6 271 aa24.87■■□□□ 1.57
VPS53-211ENST00000571805 ACER1Q8TDN7 264 aa24.87■■□□□ 1.57
VPS53-211ENST00000571805 CHMP2AO43633 222 aa24.87■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms