RNA–Protein interactions for RNA: ENST00000570484.1

CTDNEP1-204, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 2

Gene CTDNEP1, Length 393 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-204ENST00000570484 CCNE2O96020 404 aa7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 KRT18P05783 430 aaKnown RBP7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 MMP3P08254 477 aa7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 C6orf222P0C671 652 aaPredicted RBP7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 LIG1P18858 919 aa7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 QARSP47897 775 aaKnown RBP7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 USP46P62068 366 aa7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 AMPD3Q01432 767 aa7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 SP2Q02086 613 aa7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 PRKCEQ02156 737 aa7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 ARHGAP1Q07960 439 aa7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 CTTNQ14247 550 aaKnown RBP7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 SKIV2LQ15477 1246 aaKnown RBP7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 PKN2Q16513 984 aaKnown RBP7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 DGKDQ16760 1214 aa7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 GJC2Q5T442 439 aaPredicted RBP7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 KANK3Q6NY19 840 aa7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 CAVIN1Q6NZI2 390 aaKnown RBP7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 PDXDC2PQ6P474 469 aa7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 FBXO46Q6PJ61 603 aaPredicted RBP7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 THSD4Q6ZMP0 1018 aa7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 KCTD17Q8N5Z5 321 aa7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 SH3TC2Q8TF17 1288 aa7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 AFG1LQ8WV93 481 aa7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 LARP4BQ92615 738 aaKnown RBP7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 COPS5Q92905 334 aa7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 CCDC47Q96A33 483 aaKnown RBP7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 EMID1Q96A84 441 aaPredicted RBP7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 LENG1Q96BZ8 264 aaPredicted RBP7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 GPR20Q99678 358 aa7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 POLR3CQ9BUI4 534 aaPredicted RBP7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 KATNAL1Q9BW62 490 aa7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 LRRC27Q9C0I9 530 aa7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 TNMDQ9H2S6 317 aa7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 XPNPEP3Q9NQH7 507 aa7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 DDX20Q9UHI6 824 aaKnown RBP7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 TSR3Q9UJK0 312 aaKnown RBP7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 KIAA1024Q9UPX6 916 aa7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 DNM3Q9UQ16 869 aa7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 Q9Y3F1 56 aa7.35□□□□□ -1.23
CTDNEP1-204ENST00000570484 SYNRGQ9UMZ2 1314 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 CASP8AP2Q9UKL3 1982 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 FAM237AA0A1B0GTK4 181 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 GOLGA8CPA6NN73 597 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 ACTN4O43707 911 aaKnown RBP7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 TBCAO75347 108 aaKnown RBP7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 NR1I2O75469 434 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 ZNF202O95125 648 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 LGALS2P05162 132 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 MYL3P08590 195 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 SLFN14P0C7P3 912 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 ZNF286BP0CG31 522 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 MARK3P27448 753 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 CCND3P30281 292 aaPredicted RBP7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 YWHABP31946 246 aaKnown RBP7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 SLC26A2P50443 739 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 STAT5BP51692 787 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 CHMP4BP1P59074 171 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 CAP1Q01518 475 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 TRIM32Q13049 653 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 GRB10Q13322 594 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 DHX8Q14562 1220 aaKnown RBP7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 FSCN1Q16658 493 aaKnown RBP7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 HSDL1Q3SXM5 330 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 TMEM119Q4V9L6 283 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 HYIQ5T013 277 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 CCDC183Q5T5S1 534 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 MAP3K21Q5TCX8 1036 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 SWSAP1Q6NVH7 229 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 KRBA2Q6ZNG9 492 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 USP49Q70CQ1 688 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 SV2BQ7L1I2 683 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 OTUD6AQ7L8S5 288 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 TRMT1LQ7Z2T5 733 aaKnown RBP7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 RNF180Q86T96 592 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 CATSPER3Q86XQ3 398 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 CCDC60Q8IWA6 550 aaPredicted RBP7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 FMR1NBQ8N0W7 255 aaPredicted RBP7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 GPT2Q8TD30 523 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 RAD54LQ92698 747 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 NACC1Q96RE7 527 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 ANP32EQ9BTT0 268 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 MMTAG2Q9BU76 263 aaKnown RBP7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 PANK2Q9BZ23 570 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 XRN2Q9H0D6 950 aaKnown RBP eCLIP7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 CLSTN2Q9H4D0 955 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 SMARCAD1Q9H4L7 1026 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 ERAP1Q9NZ08 941 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 RGL1Q9NZL6 768 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 HPSEQ9Y251 543 aa7.34□□□□□ -1.23
CTDNEP1-204ENST00000570484 KBTBD13C9JR72 458 aa7.33□□□□□ -1.24
CTDNEP1-204ENST00000570484 SPTLC1O15269 473 aa7.33□□□□□ -1.24
CTDNEP1-204ENST00000570484 CTAGE5O15320 804 aa7.33□□□□□ -1.24
CTDNEP1-204ENST00000570484 ADCY6O43306 1168 aa7.33□□□□□ -1.24
CTDNEP1-204ENST00000570484 KPNA6O60684 536 aa7.33□□□□□ -1.24
CTDNEP1-204ENST00000570484 USO1O60763 962 aaKnown RBP7.33□□□□□ -1.24
CTDNEP1-204ENST00000570484 SMC2O95347 1197 aa7.33□□□□□ -1.24
CTDNEP1-204ENST00000570484 MYCP01106 439 aaPredicted RBP7.33□□□□□ -1.24
CTDNEP1-204ENST00000570484 AFMP43652 599 aa7.33□□□□□ -1.24
CTDNEP1-204ENST00000570484 ASIC1P78348 528 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms