RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 SALL4Q9UJQ4 1053 aa10.9□□□□□ -0.66
VPS53-206ENST00000570359 AJAP1Q9UKB5 411 aaPredicted RBP10.9□□□□□ -0.66
VPS53-206ENST00000570359 PITPNM2Q9BZ72 1349 aa10.9□□□□□ -0.66
VPS53-206ENST00000570359 EPB41P11171 864 aaKnown RBP10.89□□□□□ -0.67
VPS53-206ENST00000570359 MRPS9P82933 396 aaKnown RBP10.89□□□□□ -0.67
VPS53-206ENST00000570359 BAATQ14032 418 aaPredicted RBP10.89□□□□□ -0.67
VPS53-206ENST00000570359 TKFCQ3LXA3 575 aa10.89□□□□□ -0.67
VPS53-206ENST00000570359 MCTP2Q6DN12 878 aa10.89□□□□□ -0.67
VPS53-206ENST00000570359 SNRNP48Q6IEG0 339 aaKnown RBP10.89□□□□□ -0.67
VPS53-206ENST00000570359 RNF207Q6ZRF8 634 aa10.89□□□□□ -0.67
VPS53-206ENST00000570359 CEP112Q8N8E3 955 aa10.89□□□□□ -0.67
VPS53-206ENST00000570359 SYTL5Q8TDW5 730 aaPredicted RBP10.89□□□□□ -0.67
VPS53-206ENST00000570359 BBXQ8WY36 941 aaPredicted RBP10.89□□□□□ -0.67
VPS53-206ENST00000570359 RNF146Q9NTX7 359 aa10.89□□□□□ -0.67
VPS53-206ENST00000570359 OGFRQ9NZT2 677 aa10.89□□□□□ -0.67
VPS53-206ENST00000570359 PGAP2Q9UHJ9 254 aa10.89□□□□□ -0.67
VPS53-206ENST00000570359 SAR1BQ9Y6B6 198 aa10.89□□□□□ -0.67
VPS53-206ENST00000570359 GOLGA8IPA6NC78 632 aa10.89□□□□□ -0.67
VPS53-206ENST00000570359 GOLGA8JA6NMD2 632 aa10.89□□□□□ -0.67
VPS53-206ENST00000570359 WDR46O15213 610 aaKnown RBP10.89□□□□□ -0.67
VPS53-206ENST00000570359 TBC1D12O60347 775 aa10.89□□□□□ -0.67
VPS53-206ENST00000570359 CLSTN1O94985 981 aa10.89□□□□□ -0.67
VPS53-206ENST00000570359 FTCDO95954 541 aa10.89□□□□□ -0.67
VPS53-206ENST00000570359 AFPP02771 609 aaKnown RBP10.89□□□□□ -0.67
VPS53-206ENST00000570359 SEMA3FQ13275 785 aa10.89□□□□□ -0.67
VPS53-206ENST00000570359 ASIC2Q16515 512 aa10.89□□□□□ -0.67
VPS53-206ENST00000570359 EXOC3L4Q17RC7 722 aa10.89□□□□□ -0.67
VPS53-206ENST00000570359 SLC9C1Q4G0N8 1177 aa10.89□□□□□ -0.67
VPS53-206ENST00000570359 PADI6Q6TGC4 694 aa10.89□□□□□ -0.67
VPS53-206ENST00000570359 C1orf186Q6ZWK4 172 aa10.89□□□□□ -0.67
VPS53-206ENST00000570359 RSRC2Q7L4I2 434 aaKnown RBP10.89□□□□□ -0.67
VPS53-206ENST00000570359 ZSWIM2Q8NEG5 633 aa10.89□□□□□ -0.67
VPS53-206ENST00000570359 FAM84AQ96KN4 292 aa10.89□□□□□ -0.67
VPS53-206ENST00000570359 CEP63Q96MT8 703 aa10.89□□□□□ -0.67
VPS53-206ENST00000570359 A0A1W2PQJ5 194 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 ZBED4O75132 1171 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 TGFB2P61812 414 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 PPP2R5CQ13362 524 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 ARHGAP44Q17R89 818 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 FAM186BQ8IYM0 893 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 CCDC170Q8IYT3 715 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 KRT222Q8N1A0 295 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 GPR161Q8N6U8 529 aaKnown RBP10.88□□□□□ -0.67
VPS53-206ENST00000570359 SLC16A10Q8TF71 515 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 CNKSR2Q8WXI2 1034 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 NACC1Q96RE7 527 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 ANKZF1Q9H8Y5 726 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 CEP72Q9P209 647 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 USP20Q9Y2K6 914 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 PSME4Q14997 1843 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 FRMD3A2A2Y4 597 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 TGFB1I1O43294 461 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 EXOC3O60645 756 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 LRRN2O75325 713 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 SASH3O75995 380 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 VSNL1P62760 191 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 TRAF1Q13077 416 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 FAM102BQ5T8I3 360 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 FKBP1CQ5VVH2 108 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 CC2D1AQ6P1N0 951 aaPredicted RBP10.88□□□□□ -0.67
VPS53-206ENST00000570359 COG1Q8WTW3 980 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 ZBED3Q96IU2 234 aaPredicted RBP10.88□□□□□ -0.67
VPS53-206ENST00000570359 TUFT1Q9NNX1 390 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 TYW1Q9NV66 732 aaKnown RBP10.88□□□□□ -0.67
VPS53-206ENST00000570359 MYH11P35749 1972 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 A0A087X0T9 212 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 CCDC169A6NNP5 214 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 SLC16A4O15374 487 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 GFPT2O94808 682 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 FAM228BP0C875 321 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 TNNT3P45378 269 aaPredicted RBP10.88□□□□□ -0.67
VPS53-206ENST00000570359 GYS2P54840 703 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 XKR9Q5GH70 373 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 MTMR14Q8NCE2 650 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 RABGGTAQ92696 567 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 MTFR1LQ9H019 292 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 SLC38A10Q9HBR0 1119 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 ARFGAP3Q9NP61 516 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 ZCCHC17Q9NP64 241 aaKnown RBP10.88□□□□□ -0.67
VPS53-206ENST00000570359 PPP1R9AQ9ULJ8 1098 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 ATAD5Q96QE3 1844 aa10.88□□□□□ -0.67
VPS53-206ENST00000570359 COL2A1P02458 1487 aaPredicted RBP10.87□□□□□ -0.67
VPS53-206ENST00000570359 ZMYM2Q9UBW7 1377 aa10.87□□□□□ -0.67
VPS53-206ENST00000570359 PDE2AO00408 941 aaPredicted RBP10.87□□□□□ -0.67
VPS53-206ENST00000570359 BACH1O14867 736 aa10.87□□□□□ -0.67
VPS53-206ENST00000570359 CTNND1O60716 968 aaKnown RBP10.87□□□□□ -0.67
VPS53-206ENST00000570359 TACC1O75410 805 aa10.87□□□□□ -0.67
VPS53-206ENST00000570359 ECM2O94769 699 aaPredicted RBP10.87□□□□□ -0.67
VPS53-206ENST00000570359 GNA14O95837 355 aa10.87□□□□□ -0.67
VPS53-206ENST00000570359 NOP2P46087 812 aaKnown RBP10.87□□□□□ -0.67
VPS53-206ENST00000570359 PEX3P56589 373 aa10.87□□□□□ -0.67
VPS53-206ENST00000570359 SETQ01105 290 aaPredicted RBP10.87□□□□□ -0.67
VPS53-206ENST00000570359 AMPD2Q01433 879 aa10.87□□□□□ -0.67
VPS53-206ENST00000570359 PGM5Q15124 567 aa10.87□□□□□ -0.67
VPS53-206ENST00000570359 EPHA7Q15375 998 aa10.87□□□□□ -0.67
VPS53-206ENST00000570359 KIAA0753Q2KHM9 967 aa10.87□□□□□ -0.67
VPS53-206ENST00000570359 HGSNATQ68CP4 663 aa10.87□□□□□ -0.67
VPS53-206ENST00000570359 EPM2AIP1Q7L775 607 aaPredicted RBP10.87□□□□□ -0.67
VPS53-206ENST00000570359 HS2ST1Q7LGA3 356 aa10.87□□□□□ -0.67
VPS53-206ENST00000570359 MS4A14Q96JA4 679 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms