RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 KCNH3Q9ULD8 1083 aa9.46□□□□□ -0.9
SF3B3-212ENST00000568539 KIAA1024Q9UPX6 916 aa9.46□□□□□ -0.9
SF3B3-212ENST00000568539 COL6A3P12111 3177 aa9.46□□□□□ -0.9
SF3B3-212ENST00000568539 A0A087WWV3 80 aa9.45□□□□□ -0.9
SF3B3-212ENST00000568539 DDX11L8A8MPP1 907 aa9.45□□□□□ -0.9
SF3B3-212ENST00000568539 H3BRB1 525 aa9.45□□□□□ -0.9
SF3B3-212ENST00000568539 HAS3O00219 553 aa9.45□□□□□ -0.9
SF3B3-212ENST00000568539 ZBTB39O15060 712 aa9.45□□□□□ -0.9
SF3B3-212ENST00000568539 GPR37O15354 613 aa9.45□□□□□ -0.9
SF3B3-212ENST00000568539 POLR2DO15514 142 aaKnown RBP9.45□□□□□ -0.9
SF3B3-212ENST00000568539 ZEB2O60315 1214 aa9.45□□□□□ -0.9
SF3B3-212ENST00000568539 DKC1O60832 514 aaKnown RBP eCLIP9.45□□□□□ -0.9
SF3B3-212ENST00000568539 SGPL1O95470 568 aa9.45□□□□□ -0.9
SF3B3-212ENST00000568539 ASGR1P07306 291 aa9.45□□□□□ -0.9
SF3B3-212ENST00000568539 MYL3P08590 195 aa9.45□□□□□ -0.9
SF3B3-212ENST00000568539 LIG1P18858 919 aa9.45□□□□□ -0.9
SF3B3-212ENST00000568539 FXR1P51114 621 aaKnown RBP eCLIP9.45□□□□□ -0.9
SF3B3-212ENST00000568539 PSMC6P62333 389 aa9.45□□□□□ -0.9
SF3B3-212ENST00000568539 FAM160A1Q05DH4 1040 aa9.45□□□□□ -0.9
SF3B3-212ENST00000568539 SNW1Q13573 536 aaKnown RBP9.45□□□□□ -0.9
SF3B3-212ENST00000568539 ZRSR1Q15695 479 aaKnown RBP9.45□□□□□ -0.9
SF3B3-212ENST00000568539 KCNA10Q16322 511 aa9.45□□□□□ -0.9
SF3B3-212ENST00000568539 NAALADL2Q58DX5 795 aa9.45□□□□□ -0.9
SF3B3-212ENST00000568539 XKR3Q5GH77 459 aa9.45□□□□□ -0.9
SF3B3-212ENST00000568539 RRAGBQ5VZM2 374 aa9.45□□□□□ -0.9
SF3B3-212ENST00000568539 CXCL17Q6UXB2 119 aa9.45□□□□□ -0.9
SF3B3-212ENST00000568539 CCDC73Q6ZRK6 1079 aa9.45□□□□□ -0.9
SF3B3-212ENST00000568539 ANO5Q75V66 913 aa9.45□□□□□ -0.9
SF3B3-212ENST00000568539 FMR1NBQ8N0W7 255 aaPredicted RBP9.45□□□□□ -0.9
SF3B3-212ENST00000568539 PDILTQ8N807 584 aa9.45□□□□□ -0.9
SF3B3-212ENST00000568539 PCSK9Q8NBP7 692 aaKnown RBP9.45□□□□□ -0.9
SF3B3-212ENST00000568539 ARRDC4Q8NCT1 418 aa9.45□□□□□ -0.9
SF3B3-212ENST00000568539 RASSF8Q8NHQ8 419 aa9.45□□□□□ -0.9
SF3B3-212ENST00000568539 LRRC15Q8TF66 581 aa9.45□□□□□ -0.9
SF3B3-212ENST00000568539 U2AF1L4Q8WU68 220 aaKnown RBP9.45□□□□□ -0.9
SF3B3-212ENST00000568539 CDK5RAP3Q96JB5 506 aa9.45□□□□□ -0.9
SF3B3-212ENST00000568539 NACC1Q96RE7 527 aa9.45□□□□□ -0.9
SF3B3-212ENST00000568539 TSEN34Q9BSV6 310 aaKnown RBP9.45□□□□□ -0.9
SF3B3-212ENST00000568539 MTG1Q9BT17 334 aaPredicted RBP9.45□□□□□ -0.9
SF3B3-212ENST00000568539 PANK2Q9BZ23 570 aa9.45□□□□□ -0.9
SF3B3-212ENST00000568539 RNPEPQ9H4A4 650 aa9.45□□□□□ -0.9
SF3B3-212ENST00000568539 TUT1Q9H6E5 874 aaKnown RBP9.45□□□□□ -0.9
SF3B3-212ENST00000568539 BLOC1S4Q9NUP1 217 aa9.45□□□□□ -0.9
SF3B3-212ENST00000568539 ERAP1Q9NZ08 941 aa9.45□□□□□ -0.9
SF3B3-212ENST00000568539 STK17AQ9UEE5 414 aa9.45□□□□□ -0.9
SF3B3-212ENST00000568539 ZNF215Q9UL58 517 aaPredicted RBP9.45□□□□□ -0.9
SF3B3-212ENST00000568539 CUL9Q8IWT3 2517 aa9.45□□□□□ -0.9
SF3B3-212ENST00000568539 RANBP2P49792 3224 aaKnown RBP9.44□□□□□ -0.9
SF3B3-212ENST00000568539 TMEM150BA6NC51 233 aa9.44□□□□□ -0.9
SF3B3-212ENST00000568539 MOXD2PA6NHM9 499 aa9.44□□□□□ -0.9
SF3B3-212ENST00000568539 E9PMD0 336 aa9.44□□□□□ -0.9
SF3B3-212ENST00000568539 DNM1LO00429 736 aa9.44□□□□□ -0.9
SF3B3-212ENST00000568539 NR1I2O75469 434 aa9.44□□□□□ -0.9
SF3B3-212ENST00000568539 OATP04181 439 aa9.44□□□□□ -0.9
SF3B3-212ENST00000568539 XRCC6P12956 609 aaKnown RBP eCLIP9.44□□□□□ -0.9
SF3B3-212ENST00000568539 MARK3P27448 753 aa9.44□□□□□ -0.9
SF3B3-212ENST00000568539 YWHABP31946 246 aaKnown RBP9.44□□□□□ -0.9
SF3B3-212ENST00000568539 STAT6P42226 847 aa9.44□□□□□ -0.9
SF3B3-212ENST00000568539 SYKP43405 635 aa9.44□□□□□ -0.9
SF3B3-212ENST00000568539 GJA8P48165 433 aa9.44□□□□□ -0.9
SF3B3-212ENST00000568539 ACLYP53396 1101 aa9.44□□□□□ -0.9
SF3B3-212ENST00000568539 PLCB4Q15147 1175 aa9.44□□□□□ -0.9
SF3B3-212ENST00000568539 LONRF3Q496Y0 759 aa9.44□□□□□ -0.9
SF3B3-212ENST00000568539 GPIHBP1Q8IV16 184 aa9.44□□□□□ -0.9
SF3B3-212ENST00000568539 CKAP2LQ8IYA6 745 aa9.44□□□□□ -0.9
SF3B3-212ENST00000568539 IQUBQ8NA54 791 aa9.44□□□□□ -0.9
SF3B3-212ENST00000568539 GPT2Q8TD30 523 aa9.44□□□□□ -0.9
SF3B3-212ENST00000568539 PIGOQ8TEQ8 1089 aa9.44□□□□□ -0.9
SF3B3-212ENST00000568539 ATP8B4Q8TF62 1192 aa9.44□□□□□ -0.9
SF3B3-212ENST00000568539 DHX58Q96C10 678 aa9.44□□□□□ -0.9
SF3B3-212ENST00000568539 FAM167AQ96KS9 214 aa9.44□□□□□ -0.9
SF3B3-212ENST00000568539 PYM1Q9BRP8 204 aaKnown RBP9.44□□□□□ -0.9
SF3B3-212ENST00000568539 KATNAL1Q9BW62 490 aa9.44□□□□□ -0.9
SF3B3-212ENST00000568539 NIFKQ9BYG3 293 aaKnown RBP9.44□□□□□ -0.9
SF3B3-212ENST00000568539 ANKEF1Q9NU02 776 aa9.44□□□□□ -0.9
SF3B3-212ENST00000568539 DBR1Q9UK59 544 aaKnown RBP9.44□□□□□ -0.9
SF3B3-212ENST00000568539 PHF24Q9UPV7 400 aa9.44□□□□□ -0.9
SF3B3-212ENST00000568539 DNM3Q9UQ16 869 aa9.44□□□□□ -0.9
SF3B3-212ENST00000568539 KIAA1217Q5T5P2 1943 aa9.44□□□□□ -0.9
SF3B3-212ENST00000568539 DOCK3Q8IZD9 2030 aa9.43□□□□□ -0.9
SF3B3-212ENST00000568539 ZBTB42B2RXF5 422 aa9.43□□□□□ -0.9
SF3B3-212ENST00000568539 ACTN4O43707 911 aaKnown RBP9.43□□□□□ -0.9
SF3B3-212ENST00000568539 CABYRO75952 493 aa9.43□□□□□ -0.9
SF3B3-212ENST00000568539 ZNF202O95125 648 aa9.43□□□□□ -0.9
SF3B3-212ENST00000568539 EYA4O95677 639 aa9.43□□□□□ -0.9
SF3B3-212ENST00000568539 SLFN14P0C7P3 912 aa9.43□□□□□ -0.9
SF3B3-212ENST00000568539 RARRES1P49788 294 aa9.43□□□□□ -0.9
SF3B3-212ENST00000568539 PSEN2P49810 448 aa9.43□□□□□ -0.9
SF3B3-212ENST00000568539 NPEPPSP55786 919 aa9.43□□□□□ -0.9
SF3B3-212ENST00000568539 TARBP2Q15633 366 aaKnown RBP9.43□□□□□ -0.9
SF3B3-212ENST00000568539 NFKBIBQ15653 356 aa9.43□□□□□ -0.9
SF3B3-212ENST00000568539 KIAA0753Q2KHM9 967 aa9.43□□□□□ -0.9
SF3B3-212ENST00000568539 PLA2G4FQ68DD2 849 aa9.43□□□□□ -0.9
SF3B3-212ENST00000568539 KRBA2Q6ZNG9 492 aa9.43□□□□□ -0.9
SF3B3-212ENST00000568539 OTUD6AQ7L8S5 288 aa9.43□□□□□ -0.9
SF3B3-212ENST00000568539 TRMT1LQ7Z2T5 733 aaKnown RBP9.43□□□□□ -0.9
SF3B3-212ENST00000568539 SYT2Q8N9I0 419 aaPredicted RBP9.43□□□□□ -0.9
SF3B3-212ENST00000568539 LARP4BQ92615 738 aaKnown RBP9.43□□□□□ -0.9
SF3B3-212ENST00000568539 RAD54LQ92698 747 aa9.43□□□□□ -0.9
SF3B3-212ENST00000568539 CEP89Q96ST8 783 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms