RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, human

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-208	ENST00000567250	NIFK	Q9BYG3	293 aa	Known RBP	13.61	□□□□□ -0.23
SF3B3-208	ENST00000567250	PPP1R12C	Q9BZL4	782 aa		13.61	□□□□□ -0.23
SF3B3-208	ENST00000567250	FTO	Q9C0B1	505 aa	Known RBP eCLIP	13.61	□□□□□ -0.23
SF3B3-208	ENST00000567250	RGL1	Q9NZL6	768 aa		13.61	□□□□□ -0.23
SF3B3-208	ENST00000567250	SMIM35	A0A1B0GVV1	85 aa		13.6	□□□□□ -0.23
SF3B3-208	ENST00000567250	DDX11L8	A8MPP1	907 aa		13.6	□□□□□ -0.23
SF3B3-208	ENST00000567250		M0QZ92	97 aa		13.6	□□□□□ -0.23
SF3B3-208	ENST00000567250	SPTLC2	O15270	562 aa		13.6	□□□□□ -0.23
SF3B3-208	ENST00000567250	GAS2	O43903	313 aa	Known RBP	13.6	□□□□□ -0.23
SF3B3-208	ENST00000567250	PPP6R2	O75170	966 aa		13.6	□□□□□ -0.23
SF3B3-208	ENST00000567250	SLITRK3	O94933	977 aa		13.6	□□□□□ -0.23
SF3B3-208	ENST00000567250	SYN1	P17600	705 aa		13.6	□□□□□ -0.23
SF3B3-208	ENST00000567250	RFC5	P40937	340 aa		13.6	□□□□□ -0.23
SF3B3-208	ENST00000567250	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	13.6	□□□□□ -0.23
SF3B3-208	ENST00000567250	MTHFD1L	Q6UB35	978 aa		13.6	□□□□□ -0.23
SF3B3-208	ENST00000567250	FOXD4L3	Q6VB84	417 aa	Predicted RBP	13.6	□□□□□ -0.23
SF3B3-208	ENST00000567250	SH3RF1	Q7Z6J0	888 aa		13.6	□□□□□ -0.23
SF3B3-208	ENST00000567250	CATSPER3	Q86XQ3	398 aa		13.6	□□□□□ -0.23
SF3B3-208	ENST00000567250	TMEM199	Q8N511	208 aa		13.6	□□□□□ -0.23
SF3B3-208	ENST00000567250	KRI1	Q8N9T8	703 aa	Known RBP	13.6	□□□□□ -0.23
SF3B3-208	ENST00000567250	LINC00301	Q8NCQ3	95 aa		13.6	□□□□□ -0.23
SF3B3-208	ENST00000567250	RASSF8	Q8NHQ8	419 aa		13.6	□□□□□ -0.23
SF3B3-208	ENST00000567250	SLC7A3	Q8WY07	619 aa		13.6	□□□□□ -0.23
SF3B3-208	ENST00000567250	CALML4	Q96GE6	196 aa		13.6	□□□□□ -0.23
SF3B3-208	ENST00000567250	CEP170P1	Q96L14	293 aa		13.6	□□□□□ -0.23
SF3B3-208	ENST00000567250	NACC1	Q96RE7	527 aa		13.6	□□□□□ -0.23
SF3B3-208	ENST00000567250	MAP7D2	Q96T17	732 aa		13.6	□□□□□ -0.23
SF3B3-208	ENST00000567250	CYP26B1	Q9NR63	512 aa		13.6	□□□□□ -0.23
SF3B3-208	ENST00000567250	ANKEF1	Q9NU02	776 aa		13.6	□□□□□ -0.23
SF3B3-208	ENST00000567250	PCDHA2	Q9Y5H9	948 aa		13.6	□□□□□ -0.23
SF3B3-208	ENST00000567250	SRPRB	Q9Y5M8	271 aa	Known RBP	13.6	□□□□□ -0.23
SF3B3-208	ENST00000567250	TRIM43B	A6NCK2	446 aa		13.59	□□□□□ -0.23
SF3B3-208	ENST00000567250	MED24	O75448	989 aa		13.59	□□□□□ -0.23
SF3B3-208	ENST00000567250	C22orf31	O95567	290 aa		13.59	□□□□□ -0.23
SF3B3-208	ENST00000567250	XRCC6	P12956	609 aa	Known RBP eCLIP	13.59	□□□□□ -0.23
SF3B3-208	ENST00000567250	SELP	P16109	830 aa		13.59	□□□□□ -0.23
SF3B3-208	ENST00000567250	NCL	P19338	710 aa	Known RBP	13.59	□□□□□ -0.23
SF3B3-208	ENST00000567250	KLRC1	P26715	233 aa		13.59	□□□□□ -0.23
SF3B3-208	ENST00000567250	MARCKS	P29966	332 aa	Predicted RBP	13.59	□□□□□ -0.23
SF3B3-208	ENST00000567250	RFC2	P35250	354 aa		13.59	□□□□□ -0.23
SF3B3-208	ENST00000567250	DDIT3	P35638	169 aa		13.59	□□□□□ -0.23
SF3B3-208	ENST00000567250	UBA7	P41226	1012 aa		13.59	□□□□□ -0.23
SF3B3-208	ENST00000567250	POLG	P54098	1239 aa	Predicted RBP	13.59	□□□□□ -0.23
SF3B3-208	ENST00000567250	ZNF200	P98182	395 aa	Predicted RBP	13.59	□□□□□ -0.23
SF3B3-208	ENST00000567250	DNM1	Q05193	864 aa	Known RBP	13.59	□□□□□ -0.23
SF3B3-208	ENST00000567250	HIC1	Q14526	733 aa		13.59	□□□□□ -0.23
SF3B3-208	ENST00000567250	IL17A	Q16552	155 aa		13.59	□□□□□ -0.23
SF3B3-208	ENST00000567250	XKR9	Q5GH70	373 aa		13.59	□□□□□ -0.23
SF3B3-208	ENST00000567250	MARCH8	Q5T0T0	291 aa		13.59	□□□□□ -0.23
SF3B3-208	ENST00000567250	MFSD5	Q6N075	450 aa		13.59	□□□□□ -0.23
SF3B3-208	ENST00000567250	ANO5	Q75V66	913 aa		13.59	□□□□□ -0.23
SF3B3-208	ENST00000567250	LRRC8D	Q7L1W4	858 aa		13.59	□□□□□ -0.23
SF3B3-208	ENST00000567250	RPAIN	Q86UA6	219 aa		13.59	□□□□□ -0.23
SF3B3-208	ENST00000567250	ZNF710	Q8N1W2	664 aa		13.59	□□□□□ -0.23
SF3B3-208	ENST00000567250	TRAPPC12	Q8WVT3	735 aa		13.59	□□□□□ -0.23
SF3B3-208	ENST00000567250	TRIM43	Q96BQ3	446 aa	Predicted RBP	13.59	□□□□□ -0.23
SF3B3-208	ENST00000567250	CTAGE1	Q96RT6	745 aa		13.59	□□□□□ -0.23
SF3B3-208	ENST00000567250	TSHZ2	Q9NRE2	1034 aa		13.59	□□□□□ -0.23
SF3B3-208	ENST00000567250	WRAP73	Q9P2S5	460 aa	Predicted RBP	13.59	□□□□□ -0.23
SF3B3-208	ENST00000567250	FBXO2	Q9UK22	296 aa	Predicted RBP	13.59	□□□□□ -0.23
SF3B3-208	ENST00000567250	SSUH2	Q9Y2M2	353 aa		13.59	□□□□□ -0.23
SF3B3-208	ENST00000567250	ZDHHC9	Q9Y397	364 aa		13.59	□□□□□ -0.23
SF3B3-208	ENST00000567250	RBM19	Q9Y4C8	960 aa	Known RBP	13.59	□□□□□ -0.23
SF3B3-208	ENST00000567250	CEP290	O15078	2479 aa		13.59	□□□□□ -0.23
SF3B3-208	ENST00000567250	SCN5A	Q14524	2016 aa		13.58	□□□□□ -0.24
SF3B3-208	ENST00000567250	ZBTB42	B2RXF5	422 aa		13.58	□□□□□ -0.24
SF3B3-208	ENST00000567250	PFKM	P08237	780 aa		13.58	□□□□□ -0.24
SF3B3-208	ENST00000567250	SPATA31C1	P0DKV0	1188 aa		13.58	□□□□□ -0.24
SF3B3-208	ENST00000567250	CKB	P12277	381 aa		13.58	□□□□□ -0.24
SF3B3-208	ENST00000567250	THPO	P40225	353 aa		13.58	□□□□□ -0.24
SF3B3-208	ENST00000567250	DNM2	P50570	870 aa		13.58	□□□□□ -0.24
SF3B3-208	ENST00000567250	FPGS	Q05932	587 aa		13.58	□□□□□ -0.24
SF3B3-208	ENST00000567250	PPIG	Q13427	754 aa	Known RBP eCLIP	13.58	□□□□□ -0.24	1e-7	■□□□□ 9.7
SF3B3-208	ENST00000567250	TARBP2	Q15633	366 aa	Known RBP	13.58	□□□□□ -0.24
SF3B3-208	ENST00000567250	IER5	Q5VY09	327 aa		13.58	□□□□□ -0.24
SF3B3-208	ENST00000567250	PLA2G4F	Q68DD2	849 aa		13.58	□□□□□ -0.24
SF3B3-208	ENST00000567250	POTEG	Q6S5H5	508 aa		13.58	□□□□□ -0.24
SF3B3-208	ENST00000567250	CABP7	Q86V35	215 aa		13.58	□□□□□ -0.24
SF3B3-208	ENST00000567250	NME8	Q8N427	588 aa		13.58	□□□□□ -0.24
SF3B3-208	ENST00000567250	METTL13	Q8N6R0	699 aa		13.58	□□□□□ -0.24
SF3B3-208	ENST00000567250	DHX38	Q92620	1227 aa	Known RBP	13.58	□□□□□ -0.24
SF3B3-208	ENST00000567250	SCAND2P	Q9GZW5	306 aa	Predicted RBP	13.58	□□□□□ -0.24
SF3B3-208	ENST00000567250	DDX19A	Q9NUU7	478 aa	Known RBP	13.58	□□□□□ -0.24
SF3B3-208	ENST00000567250	CCDC39	Q9UFE4	941 aa		13.58	□□□□□ -0.24
SF3B3-208	ENST00000567250	DBR1	Q9UK59	544 aa	Known RBP	13.58	□□□□□ -0.24
SF3B3-208	ENST00000567250	ARHGEF35	A5YM69	484 aa		13.57	□□□□□ -0.24
SF3B3-208	ENST00000567250	PP2D1	A8MPX8	630 aa		13.57	□□□□□ -0.24
SF3B3-208	ENST00000567250		H0YGN5	161 aa		13.57	□□□□□ -0.24
SF3B3-208	ENST00000567250	MAF	O75444	373 aa	Predicted RBP	13.57	□□□□□ -0.24
SF3B3-208	ENST00000567250	DGAT1	O75907	488 aa		13.57	□□□□□ -0.24
SF3B3-208	ENST00000567250	STBD1	O95210	358 aa		13.57	□□□□□ -0.24
SF3B3-208	ENST00000567250	ME1	P48163	572 aa		13.57	□□□□□ -0.24
SF3B3-208	ENST00000567250	RARRES1	P49788	294 aa		13.57	□□□□□ -0.24
SF3B3-208	ENST00000567250	TRIM71	Q2Q1W2	868 aa	Known RBP	13.57	□□□□□ -0.24
SF3B3-208	ENST00000567250	HYI	Q5T013	277 aa		13.57	□□□□□ -0.24
SF3B3-208	ENST00000567250	PRPF38B	Q5VTL8	546 aa	Known RBP	13.57	□□□□□ -0.24
SF3B3-208	ENST00000567250	RUFY4	Q6ZNE9	571 aa		13.57	□□□□□ -0.24
SF3B3-208	ENST00000567250	BAD	Q92934	168 aa		13.57	□□□□□ -0.24
SF3B3-208	ENST00000567250	SPATA32	Q96LK8	384 aa		13.57	□□□□□ -0.24
SF3B3-208	ENST00000567250	FAM49A	Q9H0Q0	323 aa	Predicted RBP	13.57	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms