RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 ME3Q16798 604 aa23.41■■□□□ 1.34
CLN3-219ENST00000565778 INF2Q27J81 1249 aa23.41■■□□□ 1.34
CLN3-219ENST00000565778 METTL13Q8N6R0 699 aa23.41■■□□□ 1.34
CLN3-219ENST00000565778 FBXO22Q8NEZ5 403 aa23.41■■□□□ 1.34
CLN3-219ENST00000565778 UNC45AQ9H3U1 944 aa23.41■■□□□ 1.34
CLN3-219ENST00000565778 GJB4Q9NTQ9 266 aa23.41■■□□□ 1.34
CLN3-219ENST00000565778 CEP131Q9UPN4 1083 aa23.41■■□□□ 1.34
CLN3-219ENST00000565778 PSMD10O75832 226 aa23.4■■□□□ 1.34
CLN3-219ENST00000565778 JAK3P52333 1124 aa23.4■■□□□ 1.34
CLN3-219ENST00000565778 MRPS5P82675 430 aaKnown RBP23.4■■□□□ 1.34
CLN3-219ENST00000565778 PAK2Q13177 524 aa23.4■■□□□ 1.34
CLN3-219ENST00000565778 LETM2Q2VYF4 491 aa23.4■■□□□ 1.34
CLN3-219ENST00000565778 TJAP1Q5JTD0 557 aa23.4■■□□□ 1.34
CLN3-219ENST00000565778 MIER3Q7Z3K6 550 aa23.4■■□□□ 1.34
CLN3-219ENST00000565778 FAM167AQ96KS9 214 aa23.4■■□□□ 1.34
CLN3-219ENST00000565778 FTHL17Q9BXU8 183 aa23.4■■□□□ 1.34
CLN3-219ENST00000565778 CDHR5Q9HBB8 845 aa23.4■■□□□ 1.34
CLN3-219ENST00000565778 LMCD1Q9NZU5 365 aa23.4■■□□□ 1.34
CLN3-219ENST00000565778 DDX25Q9UHL0 483 aaKnown RBP23.4■■□□□ 1.34
CLN3-219ENST00000565778 MICAL3Q7RTP6 2002 aa23.4■■□□□ 1.34
CLN3-219ENST00000565778 IGSF9BQ9UPX0 1349 aa23.39■■□□□ 1.34
CLN3-219ENST00000565778 KDM3AQ9Y4C1 1321 aa23.39■■□□□ 1.34
CLN3-219ENST00000565778 MAGEB2O15479 319 aa23.39■■□□□ 1.33
CLN3-219ENST00000565778 NFX1Q12986 1120 aaKnown RBP23.39■■□□□ 1.33
CLN3-219ENST00000565778 MOXD1Q6UVY6 613 aa23.39■■□□□ 1.33
CLN3-219ENST00000565778 RTN4RL1Q86UN2 441 aaPredicted RBP23.39■■□□□ 1.33
CLN3-219ENST00000565778 SAMD11Q96NU1 681 aa23.39■■□□□ 1.33
CLN3-219ENST00000565778 ASB2Q96Q27 587 aa23.39■■□□□ 1.33
CLN3-219ENST00000565778 ZNF862O60290 1169 aa23.38■■□□□ 1.33
CLN3-219ENST00000565778 C22orf31O95567 290 aa23.38■■□□□ 1.33
CLN3-219ENST00000565778 TMEM266Q2M3C6 531 aa23.38■■□□□ 1.33
CLN3-219ENST00000565778 EPC2Q52LR7 807 aa23.38■■□□□ 1.33
CLN3-219ENST00000565778 EFCAB12Q6NXP0 572 aa23.38■■□□□ 1.33
CLN3-219ENST00000565778 FIBCD1Q8N539 461 aa23.38■■□□□ 1.33
CLN3-219ENST00000565778 MBOAT7Q96N66 472 aa23.38■■□□□ 1.33
CLN3-219ENST00000565778 PPP1R16BQ96T49 567 aa23.38■■□□□ 1.33
CLN3-219ENST00000565778 RPS6KA5O75582 802 aa23.37■■□□□ 1.33
CLN3-219ENST00000565778 LARGE1O95461 756 aa23.37■■□□□ 1.33
CLN3-219ENST00000565778 OATP04181 439 aa23.37■■□□□ 1.33
CLN3-219ENST00000565778 TMOD1P28289 359 aa23.37■■□□□ 1.33
CLN3-219ENST00000565778 KIZQ2M2Z5 673 aa23.37■■□□□ 1.33
CLN3-219ENST00000565778 ODR4Q5SWX8 454 aa23.37■■□□□ 1.33
CLN3-219ENST00000565778 PIK3AP1Q6ZUJ8 805 aa23.37■■□□□ 1.33
CLN3-219ENST00000565778 NEK8Q86SG6 692 aa23.37■■□□□ 1.33
CLN3-219ENST00000565778 TMEM192Q8IY95 271 aa23.37■■□□□ 1.33
CLN3-219ENST00000565778 RDM1Q8NG50 284 aa23.37■■□□□ 1.33
CLN3-219ENST00000565778 OXER1Q8TDS5 423 aa23.37■■□□□ 1.33
CLN3-219ENST00000565778 GTF3C6Q969F1 213 aa23.37■■□□□ 1.33
CLN3-219ENST00000565778 NOC2LQ9Y3T9 749 aaKnown RBP23.37■■□□□ 1.33
CLN3-219ENST00000565778 MARCH6O60337 910 aa23.36■■□□□ 1.33
CLN3-219ENST00000565778 VTNP04004 478 aa23.36■■□□□ 1.33
CLN3-219ENST00000565778 FDPSP14324 419 aaKnown RBP23.36■■□□□ 1.33
CLN3-219ENST00000565778 PRKCEQ02156 737 aa23.36■■□□□ 1.33
CLN3-219ENST00000565778 UGCGQ16739 394 aa23.36■■□□□ 1.33
CLN3-219ENST00000565778 IL27Q8NEV9 243 aa23.36■■□□□ 1.33
CLN3-219ENST00000565778 ETNPPLQ8TBG4 499 aa23.36■■□□□ 1.33
CLN3-219ENST00000565778 AKT3Q9Y243 479 aa23.36■■□□□ 1.33
CLN3-219ENST00000565778 GPR182O15218 404 aa23.35■■□□□ 1.33
CLN3-219ENST00000565778 SLC37A4O43826 429 aa23.35■■□□□ 1.33
CLN3-219ENST00000565778 CCNT1O60563 726 aaKnown RBP23.35■■□□□ 1.33
CLN3-219ENST00000565778 STAG3L1P0CL83 205 aa23.35■■□□□ 1.33
CLN3-219ENST00000565778 IBSPP21815 317 aaPredicted RBP23.35■■□□□ 1.33
CLN3-219ENST00000565778 CLCN3P51790 818 aa23.35■■□□□ 1.33
CLN3-219ENST00000565778 CRYBB1P53674 252 aaPredicted RBP23.35■■□□□ 1.33
CLN3-219ENST00000565778 GPM6BQ13491 265 aa23.35■■□□□ 1.33
CLN3-219ENST00000565778 PPP4R3AQ6IN85 833 aa23.35■■□□□ 1.33
CLN3-219ENST00000565778 LINC01599Q8WXQ3 324 aa23.35■■□□□ 1.33
CLN3-219ENST00000565778 BRMS1Q9HCU9 246 aa23.35■■□□□ 1.33
CLN3-219ENST00000565778 DGKIO75912 1065 aa23.34■■□□□ 1.33
CLN3-219ENST00000565778 GCFC2P16383 781 aaKnown RBP23.34■■□□□ 1.33
CLN3-219ENST00000565778 KRT2P35908 639 aa23.34■■□□□ 1.33
CLN3-219ENST00000565778 BTG3Q14201 252 aaPredicted RBP23.34■■□□□ 1.33
CLN3-219ENST00000565778 AAK1Q2M2I8 961 aa23.34■■□□□ 1.33
CLN3-219ENST00000565778 LRRC71Q8N4P6 559 aa23.34■■□□□ 1.33
CLN3-219ENST00000565778 TMEM40Q8WWA1 233 aa23.34■■□□□ 1.33
CLN3-219ENST00000565778 FAM20AQ96MK3 541 aa23.34■■□□□ 1.33
CLN3-219ENST00000565778 MAP7D2Q96T17 732 aa23.34■■□□□ 1.33
CLN3-219ENST00000565778 OSMRQ99650 979 aa23.34■■□□□ 1.33
CLN3-219ENST00000565778 NAP1L4Q99733 375 aaKnown RBP23.34■■□□□ 1.33
CLN3-219ENST00000565778 TMX1Q9H3N1 280 aa23.34■■□□□ 1.33
CLN3-219ENST00000565778 ERVK-5Q9HDB9 667 aa23.34■■□□□ 1.33
CLN3-219ENST00000565778 LRFN2Q9ULH4 789 aa23.34■■□□□ 1.33
CLN3-219ENST00000565778 ST3GAL5Q9UNP4 418 aa23.34■■□□□ 1.33
CLN3-219ENST00000565778 DDX11L8A8MPP1 907 aa23.33■■□□□ 1.33
CLN3-219ENST00000565778 H3BNC9 293 aa23.33■■□□□ 1.33
CLN3-219ENST00000565778 GPR32O75388 356 aa23.33■■□□□ 1.33
CLN3-219ENST00000565778 NLRP11P59045 1033 aaKnown RBP23.33■■□□□ 1.33
CLN3-219ENST00000565778 TFF2Q03403 129 aa23.33■■□□□ 1.33
CLN3-219ENST00000565778 TBC1D8BQ0IIM8 1120 aa23.33■■□□□ 1.33
CLN3-219ENST00000565778 PTPROQ16827 1216 aa23.33■■□□□ 1.33
CLN3-219ENST00000565778 XKR3Q5GH77 459 aa23.33■■□□□ 1.33
CLN3-219ENST00000565778 B3GNT9Q6UX72 402 aa23.33■■□□□ 1.33
CLN3-219ENST00000565778 NPAS4Q8IUM7 802 aa23.33■■□□□ 1.33
CLN3-219ENST00000565778 NSUN7Q8NE18 718 aaKnown RBP23.33■■□□□ 1.33
CLN3-219ENST00000565778 HLA-CQ95604 372 aa23.33■■□□□ 1.33
CLN3-219ENST00000565778 ZNF689Q96CS4 500 aaPredicted RBP23.33■■□□□ 1.33
CLN3-219ENST00000565778 COG5Q9UP83 839 aa23.33■■□□□ 1.33
CLN3-219ENST00000565778 PRRC2BQ5JSZ5 2229 aaKnown RBP23.33■■□□□ 1.33
CLN3-219ENST00000565778 ADGRA3Q8IWK6 1321 aa23.33■■□□□ 1.32
CLN3-219ENST00000565778 TRANK1O15050 2925 aa23.32■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms