RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 FAM124AQ86V42 546 aa6.13□□□□□ -1.43
VPS35-205ENST00000563984 PROSER1Q86XN7 944 aa6.13□□□□□ -1.43
VPS35-205ENST00000563984 RBM12BQ8IXT5 1001 aaKnown RBP6.13□□□□□ -1.43
VPS35-205ENST00000563984 TXNDC5Q8NBS9 432 aaKnown RBP6.13□□□□□ -1.43
VPS35-205ENST00000563984 PCDH19Q8TAB3 1148 aa6.13□□□□□ -1.43
VPS35-205ENST00000563984 SCAND2PQ9GZW5 306 aaPredicted RBP6.13□□□□□ -1.43
VPS35-205ENST00000563984 DLL4Q9NR61 685 aa6.13□□□□□ -1.43
VPS35-205ENST00000563984 CATSPERZQ9NTU4 200 aa6.13□□□□□ -1.43
VPS35-205ENST00000563984 WASF3Q9UPY6 502 aa6.13□□□□□ -1.43
VPS35-205ENST00000563984 TMA7Q9Y2S6 64 aaKnown RBP6.13□□□□□ -1.43
VPS35-205ENST00000563984 TELO2Q9Y4R8 837 aa6.13□□□□□ -1.43
VPS35-205ENST00000563984 ZCCHC6Q5VYS8 1495 aaKnown RBP6.13□□□□□ -1.43
VPS35-205ENST00000563984 CFAP69A5D8W1 941 aa6.12□□□□□ -1.43
VPS35-205ENST00000563984 MROH6A6NGR9 719 aa6.12□□□□□ -1.43
VPS35-205ENST00000563984 CRTAMO95727 393 aa6.12□□□□□ -1.43
VPS35-205ENST00000563984 ENO2P09104 434 aaPredicted RBP6.12□□□□□ -1.43
VPS35-205ENST00000563984 ST5P78524 1137 aa6.12□□□□□ -1.43
VPS35-205ENST00000563984 TRIM61Q5EBN2 209 aa6.12□□□□□ -1.43
VPS35-205ENST00000563984 FAM47CQ5HY64 1035 aa6.12□□□□□ -1.43
VPS35-205ENST00000563984 MCTP2Q6DN12 878 aa6.12□□□□□ -1.43
VPS35-205ENST00000563984 TMC5Q6UXY8 1006 aa6.12□□□□□ -1.43
VPS35-205ENST00000563984 ARHGAP36Q6ZRI8 547 aa6.12□□□□□ -1.43
VPS35-205ENST00000563984 PDILTQ8N807 584 aa6.12□□□□□ -1.43
VPS35-205ENST00000563984 GPATCH3Q96I76 525 aa6.12□□□□□ -1.43
VPS35-205ENST00000563984 ZSWIM3Q96MP5 696 aa6.12□□□□□ -1.43
VPS35-205ENST00000563984 L2HGDHQ9H9P8 463 aa6.12□□□□□ -1.43
VPS35-205ENST00000563984 CHPF2Q9P2E5 772 aa6.12□□□□□ -1.43
VPS35-205ENST00000563984 CROTQ9UKG9 612 aa6.12□□□□□ -1.43
VPS35-205ENST00000563984 UNC13AQ9UPW8 1703 aa6.12□□□□□ -1.43
VPS35-205ENST00000563984 PCDHA9Q9Y5H5 950 aa6.12□□□□□ -1.43
VPS35-205ENST00000563984 SBNO2Q9Y2G9 1366 aa6.11□□□□□ -1.43
VPS35-205ENST00000563984 TCRBV5S4A2TA0A5A2 114 aa6.11□□□□□ -1.43
VPS35-205ENST00000563984 IPO8O15397 1037 aaKnown RBP6.11□□□□□ -1.43
VPS35-205ENST00000563984 KCNQ2O43526 872 aa6.11□□□□□ -1.43
VPS35-205ENST00000563984 TDO2P48775 406 aa6.11□□□□□ -1.43
VPS35-205ENST00000563984 CRY1Q16526 586 aa6.11□□□□□ -1.43
VPS35-205ENST00000563984 BORAQ6PGQ7 559 aa6.11□□□□□ -1.43
VPS35-205ENST00000563984 NOP9Q86U38 636 aaKnown RBP6.11□□□□□ -1.43
VPS35-205ENST00000563984 DTX3Q8N9I9 347 aa6.11□□□□□ -1.43
VPS35-205ENST00000563984 GSTCDQ8NEC7 633 aa6.11□□□□□ -1.43
VPS35-205ENST00000563984 SH3RF2Q8TEC5 729 aa6.11□□□□□ -1.43
VPS35-205ENST00000563984 LCORQ96JN0 433 aaPredicted RBP6.11□□□□□ -1.43
VPS35-205ENST00000563984 MAGEB10Q96LZ2 347 aaPredicted RBP6.11□□□□□ -1.43
VPS35-205ENST00000563984 MRPL4Q9BYD3 311 aaKnown RBP6.11□□□□□ -1.43
VPS35-205ENST00000563984 RSPH9Q9H1X1 276 aaPredicted RBP6.11□□□□□ -1.43
VPS35-205ENST00000563984 SLC52A2Q9HAB3 445 aa6.11□□□□□ -1.43
VPS35-205ENST00000563984 NDOR1Q9UHB4 597 aa6.11□□□□□ -1.43
VPS35-205ENST00000563984 SRPK3Q9UPE1 567 aa6.11□□□□□ -1.43
VPS35-205ENST00000563984 CCDC180Q9P1Z9 1646 aa6.1□□□□□ -1.43
VPS35-205ENST00000563984 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.1□□□□□ -1.43
VPS35-205ENST00000563984 PPP1R12AO14974 1030 aaPredicted RBP6.1□□□□□ -1.43
VPS35-205ENST00000563984 CYP1A1P04798 512 aaPredicted RBP6.1□□□□□ -1.43
VPS35-205ENST00000563984 CHGBP05060 677 aa6.1□□□□□ -1.43
VPS35-205ENST00000563984 CKMP06732 381 aa6.1□□□□□ -1.43
VPS35-205ENST00000563984 TPM2P07951 284 aa6.1□□□□□ -1.43
VPS35-205ENST00000563984 SRGAP2CP0DJJ0 459 aa6.1□□□□□ -1.43
VPS35-205ENST00000563984 PYGMP11217 842 aa6.1□□□□□ -1.43
VPS35-205ENST00000563984 PDE6AP16499 860 aa6.1□□□□□ -1.43
VPS35-205ENST00000563984 IBSPP21815 317 aaPredicted RBP6.1□□□□□ -1.43
VPS35-205ENST00000563984 MLLT6P55198 1093 aaPredicted RBP6.1□□□□□ -1.43
VPS35-205ENST00000563984 PTPROQ16827 1216 aa6.1□□□□□ -1.43
VPS35-205ENST00000563984 HSP90B2PQ58FF3 399 aa6.1□□□□□ -1.43
VPS35-205ENST00000563984 L1TD1Q5T7N2 865 aaKnown RBP6.1□□□□□ -1.43
VPS35-205ENST00000563984 BTBD8Q5XKL5 378 aa6.1□□□□□ -1.43
VPS35-205ENST00000563984 CD276Q5ZPR3 534 aa6.1□□□□□ -1.43
VPS35-205ENST00000563984 EP400NLQ6ZTU2 488 aa6.1□□□□□ -1.43
VPS35-205ENST00000563984 PCGF5Q86SE9 256 aa6.1□□□□□ -1.43
VPS35-205ENST00000563984 OSTM1Q86WC4 334 aa6.1□□□□□ -1.43
VPS35-205ENST00000563984 ZC3H7AQ8IWR0 971 aaKnown RBP6.1□□□□□ -1.43
VPS35-205ENST00000563984 CCDC146Q8IYE0 955 aa6.1□□□□□ -1.43
VPS35-205ENST00000563984 LGI4Q8N135 537 aa6.1□□□□□ -1.43
VPS35-205ENST00000563984 LILRB2Q8N423 598 aa6.1□□□□□ -1.43
VPS35-205ENST00000563984 NGEFQ8N5V2 710 aa6.1□□□□□ -1.43
VPS35-205ENST00000563984 C1orf131Q8NDD1 294 aaKnown RBP6.1□□□□□ -1.43
VPS35-205ENST00000563984 CD244Q9BZW8 370 aa6.1□□□□□ -1.43
VPS35-205ENST00000563984 RBPJLQ9UBG7 517 aa6.1□□□□□ -1.43
VPS35-205ENST00000563984 GABBR1Q9UBS5 961 aa6.1□□□□□ -1.43
VPS35-205ENST00000563984 NRBP1Q9UHY1 535 aa6.1□□□□□ -1.43
VPS35-205ENST00000563984 CCDC66A2RUB6 948 aa6.09□□□□□ -1.43
VPS35-205ENST00000563984 ACOT7O00154 380 aa6.09□□□□□ -1.43
VPS35-205ENST00000563984 HMMRO75330 724 aa6.09□□□□□ -1.43
VPS35-205ENST00000563984 LETM1O95202 739 aaPredicted RBP6.09□□□□□ -1.43
VPS35-205ENST00000563984 AMY2AP04746 511 aa6.09□□□□□ -1.43
VPS35-205ENST00000563984 AMY2BP19961 511 aa6.09□□□□□ -1.43
VPS35-205ENST00000563984 GJA4P35212 333 aa6.09□□□□□ -1.43
VPS35-205ENST00000563984 LACTBP83111 547 aaPredicted RBP6.09□□□□□ -1.43
VPS35-205ENST00000563984 FIGNQ5HY92 759 aa6.09□□□□□ -1.43
VPS35-205ENST00000563984 MTERF4Q7Z6M4 381 aaKnown RBP6.09□□□□□ -1.43
VPS35-205ENST00000563984 SLC7A14Q8TBB6 771 aa6.09□□□□□ -1.43
VPS35-205ENST00000563984 MRFAP1L1Q96HT8 127 aa6.09□□□□□ -1.43
VPS35-205ENST00000563984 CFAP53Q96M91 514 aa6.09□□□□□ -1.43
VPS35-205ENST00000563984 PAGR1Q9BTK6 254 aa6.09□□□□□ -1.43
VPS35-205ENST00000563984 TMEM168Q9H0V1 697 aa6.09□□□□□ -1.43
VPS35-205ENST00000563984 FTSJ1Q9UET6 329 aa6.09□□□□□ -1.43
VPS35-205ENST00000563984 SFMBT1Q9UHJ3 866 aa6.09□□□□□ -1.43
VPS35-205ENST00000563984 PUF60Q9UHX1 559 aaKnown RBP6.09□□□□□ -1.43
VPS35-205ENST00000563984 CBLCQ9ULV8 474 aa6.09□□□□□ -1.43
VPS35-205ENST00000563984 CTDP1Q9Y5B0 961 aaPredicted RBP6.09□□□□□ -1.43
VPS35-205ENST00000563984 PTCH2Q9Y6C5 1203 aa6.09□□□□□ -1.43
VPS35-205ENST00000563984 ATP23Q9Y6H3 246 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms