RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 TYW1Q9NV66 732 aaKnown RBP11.93□□□□□ -0.5
SF3B3-204ENST00000563739 DOCK8Q8NF50 2099 aa11.92□□□□□ -0.5
SF3B3-204ENST00000563739 TBKBP1A7MCY6 615 aa11.92□□□□□ -0.5
SF3B3-204ENST00000563739 PLEKHA8P1O95397 391 aa11.92□□□□□ -0.5
SF3B3-204ENST00000563739 ASGR2P07307 311 aa11.92□□□□□ -0.5
SF3B3-204ENST00000563739 NPR3P17342 541 aa11.92□□□□□ -0.5
SF3B3-204ENST00000563739 PDE4AP27815 886 aa11.92□□□□□ -0.5
SF3B3-204ENST00000563739 NUBP1P53384 320 aa11.92□□□□□ -0.5
SF3B3-204ENST00000563739 FAM189BP81408 668 aa11.92□□□□□ -0.5
SF3B3-204ENST00000563739 IMMTQ16891 758 aaKnown RBP11.92□□□□□ -0.5
SF3B3-204ENST00000563739 KANK3Q6NY19 840 aa11.92□□□□□ -0.5
SF3B3-204ENST00000563739 LLGL2Q6P1M3 1020 aa11.92□□□□□ -0.5
SF3B3-204ENST00000563739 RSPH3Q86UC2 560 aa11.92□□□□□ -0.5
SF3B3-204ENST00000563739 FAM228AQ86W67 206 aa11.92□□□□□ -0.5
SF3B3-204ENST00000563739 CYP2W1Q8TAV3 490 aa11.92□□□□□ -0.5
SF3B3-204ENST00000563739 COL26A1Q96A83 441 aa11.92□□□□□ -0.5
SF3B3-204ENST00000563739 MYL10Q9BUA6 226 aa11.92□□□□□ -0.5
SF3B3-204ENST00000563739 SPZ1Q9BXG8 430 aa11.92□□□□□ -0.5
SF3B3-204ENST00000563739 SMARCAD1Q9H4L7 1026 aa11.92□□□□□ -0.5
SF3B3-204ENST00000563739 CNNM2Q9H8M5 875 aa11.92□□□□□ -0.5
SF3B3-204ENST00000563739 RGS18Q9NS28 235 aa11.92□□□□□ -0.5
SF3B3-204ENST00000563739 TRPC6Q9Y210 931 aa11.92□□□□□ -0.5
SF3B3-204ENST00000563739 LZTS1Q9Y250 596 aa11.92□□□□□ -0.5
SF3B3-204ENST00000563739 GPR179Q6PRD1 2367 aa11.92□□□□□ -0.5
SF3B3-204ENST00000563739 COL4A3Q01955 1670 aa11.91□□□□□ -0.5
SF3B3-204ENST00000563739 IGKV6D-21A0A0A0MT36 114 aa11.91□□□□□ -0.5
SF3B3-204ENST00000563739 SMIM35A0A1B0GVV1 85 aa11.91□□□□□ -0.5
SF3B3-204ENST00000563739 MED19A0JLT2 244 aaPredicted RBP11.91□□□□□ -0.5
SF3B3-204ENST00000563739 PI15O43692 258 aa11.91□□□□□ -0.5
SF3B3-204ENST00000563739 CCNE2O96020 404 aa11.91□□□□□ -0.5
SF3B3-204ENST00000563739 WEE2P0C1S8 567 aa11.91□□□□□ -0.5
SF3B3-204ENST00000563739 STAG3L1P0CL83 205 aa11.91□□□□□ -0.5
SF3B3-204ENST00000563739 ATP4AP20648 1035 aa11.91□□□□□ -0.5
SF3B3-204ENST00000563739 MFAP1P55081 439 aaKnown RBP11.91□□□□□ -0.5
SF3B3-204ENST00000563739 PLCB3Q01970 1234 aa11.91□□□□□ -0.5
SF3B3-204ENST00000563739 PTH1RQ03431 593 aa11.91□□□□□ -0.5
SF3B3-204ENST00000563739 TYW1BQ6NUM6 668 aa11.91□□□□□ -0.5
SF3B3-204ENST00000563739 MTHFD1LQ6UB35 978 aa11.91□□□□□ -0.5
SF3B3-204ENST00000563739 MB21D2Q8IYB1 491 aaPredicted RBP11.91□□□□□ -0.5
SF3B3-204ENST00000563739 KIAA0319LQ8IZA0 1049 aa11.91□□□□□ -0.5
SF3B3-204ENST00000563739 SRBD1Q8N5C6 995 aaKnown RBP11.91□□□□□ -0.5
SF3B3-204ENST00000563739 IGDCC4Q8TDY8 1250 aa11.91□□□□□ -0.5
SF3B3-204ENST00000563739 MRPS27Q92552 414 aaKnown RBP11.91□□□□□ -0.5
SF3B3-204ENST00000563739 YTHDC1Q96MU7 727 aaKnown RBP11.91□□□□□ -0.5
SF3B3-204ENST00000563739 CASD1Q96PB1 797 aa11.91□□□□□ -0.5
SF3B3-204ENST00000563739 JADE2Q9NQC1 790 aa11.91□□□□□ -0.5
SF3B3-204ENST00000563739 AAASQ9NRG9 546 aa11.91□□□□□ -0.5
SF3B3-204ENST00000563739 SORCS3Q9UPU3 1222 aa11.91□□□□□ -0.5
SF3B3-204ENST00000563739 HCFC2Q9Y5Z7 792 aa11.91□□□□□ -0.5
SF3B3-204ENST00000563739 RRN3P2A6NIE6 340 aa11.9□□□□□ -0.5
SF3B3-204ENST00000563739 ATG7O95352 703 aa11.9□□□□□ -0.5
SF3B3-204ENST00000563739 GSPT1P15170 499 aaKnown RBP11.9□□□□□ -0.5
SF3B3-204ENST00000563739 IBSPP21815 317 aaPredicted RBP11.9□□□□□ -0.5
SF3B3-204ENST00000563739 IER5Q5VY09 327 aa11.9□□□□□ -0.5
SF3B3-204ENST00000563739 NLRX1Q86UT6 975 aa11.9□□□□□ -0.5
SF3B3-204ENST00000563739 TMEM173Q86WV6 379 aaPredicted RBP11.9□□□□□ -0.5
SF3B3-204ENST00000563739 GLG1Q92896 1179 aa11.9□□□□□ -0.5
SF3B3-204ENST00000563739 ADAM2Q99965 735 aa11.9□□□□□ -0.5
SF3B3-204ENST00000563739 TCF25Q9BQ70 676 aa11.9□□□□□ -0.5
SF3B3-204ENST00000563739 LY9Q9HBG7 655 aa11.9□□□□□ -0.5
SF3B3-204ENST00000563739 TMEM260Q9NX78 707 aa11.9□□□□□ -0.5
SF3B3-204ENST00000563739 MYH9P35579 1960 aaKnown RBP11.89□□□□□ -0.51
SF3B3-204ENST00000563739 hCG_1642624A0A1W2PR95 340 aa11.89□□□□□ -0.51
SF3B3-204ENST00000563739 IFIT3O14879 490 aaKnown RBP11.89□□□□□ -0.51
SF3B3-204ENST00000563739 ACTR2P61160 394 aa11.89□□□□□ -0.51
SF3B3-204ENST00000563739 KRT76Q01546 638 aa11.89□□□□□ -0.51
SF3B3-204ENST00000563739 MTMR1Q13613 665 aa11.89□□□□□ -0.51
SF3B3-204ENST00000563739 MTMR3Q13615 1198 aa11.89□□□□□ -0.51
SF3B3-204ENST00000563739 CLLU1OSQ5K130 101 aa11.89□□□□□ -0.51
SF3B3-204ENST00000563739 ASTLQ6HA08 431 aaPredicted RBP11.89□□□□□ -0.51
SF3B3-204ENST00000563739 ERMP1Q7Z2K6 904 aa11.89□□□□□ -0.51
SF3B3-204ENST00000563739 CCDC60Q8IWA6 550 aaPredicted RBP11.89□□□□□ -0.51
SF3B3-204ENST00000563739 THNSL1Q8IYQ7 743 aa11.89□□□□□ -0.51
SF3B3-204ENST00000563739 CMTR1Q8N1G2 835 aaKnown RBP11.89□□□□□ -0.51
SF3B3-204ENST00000563739 LINC01465Q8N7H1 131 aa11.89□□□□□ -0.51
SF3B3-204ENST00000563739 C12orf76Q8N812 135 aaPredicted RBP11.89□□□□□ -0.51
SF3B3-204ENST00000563739 GIMAP8Q8ND71 665 aaPredicted RBP11.89□□□□□ -0.51
SF3B3-204ENST00000563739 SMARCC2Q8TAQ2 1214 aa11.89□□□□□ -0.51
SF3B3-204ENST00000563739 BCL7CQ8WUZ0 217 aaPredicted RBP11.89□□□□□ -0.51
SF3B3-204ENST00000563739 IRF2BPLQ9H1B7 796 aa11.89□□□□□ -0.51
SF3B3-204ENST00000563739 JPH1Q9HDC5 661 aaPredicted RBP11.89□□□□□ -0.51
SF3B3-204ENST00000563739 DIAPH3Q9NSV4 1193 aa11.89□□□□□ -0.51
SF3B3-204ENST00000563739 TMEM161AQ9NX61 479 aa11.89□□□□□ -0.51
SF3B3-204ENST00000563739 SLC9A2Q9UBY0 812 aa11.89□□□□□ -0.51
SF3B3-204ENST00000563739 ST3GAL5Q9UNP4 418 aa11.89□□□□□ -0.51
SF3B3-204ENST00000563739 PCDHB12Q9Y5F1 795 aa11.89□□□□□ -0.51
SF3B3-204ENST00000563739 NFASCO94856 1347 aa11.88□□□□□ -0.51
SF3B3-204ENST00000563739 C2orf71A6NGG8 1288 aa11.88□□□□□ -0.51
SF3B3-204ENST00000563739 E7EWF7 191 aa11.88□□□□□ -0.51
SF3B3-204ENST00000563739 ADAMTS3O15072 1205 aa11.88□□□□□ -0.51
SF3B3-204ENST00000563739 B4GALT3O60512 393 aa11.88□□□□□ -0.51
SF3B3-204ENST00000563739 CLASP2O75122 1294 aaKnown RBP11.88□□□□□ -0.51
SF3B3-204ENST00000563739 GPR32O75388 356 aa11.88□□□□□ -0.51
SF3B3-204ENST00000563739 C22orf31O95567 290 aa11.88□□□□□ -0.51
SF3B3-204ENST00000563739 IGHDP01880 384 aa11.88□□□□□ -0.51
SF3B3-204ENST00000563739 LAG3P18627 525 aa11.88□□□□□ -0.51
SF3B3-204ENST00000563739 ID4P47928 161 aa11.88□□□□□ -0.51
SF3B3-204ENST00000563739 NUCB1Q02818 461 aa11.88□□□□□ -0.51
SF3B3-204ENST00000563739 NFX1Q12986 1120 aaKnown RBP11.88□□□□□ -0.51
SF3B3-204ENST00000563739 TRAF1Q13077 416 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms